Wall clock time and date at job start Tue Mar 31 2020 14:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 113.99866 * 2 1 4 4 C 1.52997 * 109.47052 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.47009 * 68.79793 * 4 3 2 6 6 C 1.46900 * 110.99565 * 56.19545 * 5 4 3 7 7 C 1.50694 * 109.47353 * 66.04951 * 6 5 4 8 8 C 1.38634 * 119.74683 * 269.72490 * 7 6 5 9 9 C 1.37620 * 120.24635 * 179.72048 * 8 7 6 10 10 C 1.40711 * 119.74760 * 0.57104 * 9 8 7 11 11 C 1.41389 * 120.24697 * 179.68366 * 10 9 8 12 12 H 1.08006 * 120.00082 * 209.19888 * 11 10 9 13 13 C 1.39938 * 120.00420 * 29.19544 * 11 10 9 14 14 N 1.30830 * 119.99639 * 10.25160 * 13 11 10 15 15 Si 1.86806 * 120.00648 * 190.24783 * 13 11 10 16 16 H 1.48504 * 109.46584 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47100 * 119.99652 * 15 13 11 18 18 H 1.48500 * 109.47156 * 240.00174 * 15 13 11 19 19 C 1.40722 * 119.50781 * 359.70262 * 10 9 8 20 20 C 1.37612 * 119.74605 * 359.97438 * 19 10 9 21 21 C 1.46899 * 111.00004 * 292.24486 * 5 4 3 22 22 C 1.50701 * 109.46862 * 288.37270 * 21 5 4 23 23 C 1.38224 * 119.61996 * 95.58848 * 22 21 5 24 24 C 1.38636 * 119.15996 * 180.02562 * 23 22 21 25 25 C 1.38666 * 118.42045 * 359.97438 * 24 23 22 26 26 C 1.38187 * 119.16418 * 0.28081 * 25 24 23 27 27 N 1.31858 * 119.61583 * 275.61124 * 22 21 5 28 28 H 1.09006 * 109.47394 * 299.99984 * 1 2 3 29 29 H 1.09002 * 109.47132 * 60.00085 * 1 2 3 30 30 H 1.08997 * 109.47110 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46612 * 59.99776 * 3 2 1 32 32 H 1.08997 * 109.47251 * 299.99901 * 3 2 1 33 33 H 1.09000 * 109.47489 * 308.79830 * 4 3 2 34 34 H 1.08999 * 109.47190 * 188.79858 * 4 3 2 35 35 H 1.09006 * 109.46792 * 186.05002 * 6 5 4 36 36 H 1.09000 * 109.47100 * 306.04431 * 6 5 4 37 37 H 1.08003 * 119.87750 * 359.97380 * 8 7 6 38 38 H 1.08004 * 120.12899 * 180.27708 * 9 8 7 39 39 H 0.97002 * 120.00091 * 180.02562 * 14 13 11 40 40 H 1.08003 * 120.12743 * 179.97438 * 19 10 9 41 41 H 1.08005 * 119.87860 * 179.97438 * 20 19 10 42 42 H 1.08994 * 109.47066 * 168.37379 * 21 5 4 43 43 H 1.08999 * 109.47155 * 48.36855 * 21 5 4 44 44 H 1.07997 * 120.42077 * 0.04280 * 23 22 21 45 45 H 1.08005 * 120.78666 * 180.02562 * 24 23 22 46 46 H 1.08000 * 120.41916 * 180.02562 * 25 24 23 47 47 H 1.08002 * 119.61717 * 179.70435 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9845 0.6465 -1.2904 6 6 3.5051 1.4778 -2.4026 7 6 4.1576 2.8344 -2.3334 8 6 3.5491 3.8546 -1.6187 9 6 4.1387 5.0959 -1.5439 10 6 5.3577 5.3308 -2.2062 11 6 5.9694 6.6040 -2.1419 12 1 6.5880 6.9477 -2.9578 13 6 5.7733 7.4187 -1.0213 14 7 5.1962 6.9330 0.0477 15 14 6.3355 9.1999 -1.0513 16 1 6.9539 9.5015 -2.3674 17 1 5.1673 10.0914 -0.8379 18 1 7.3319 9.4227 0.0270 19 6 5.9633 4.2894 -2.9334 20 6 5.3591 3.0543 -2.9890 21 6 3.5590 -0.7498 -1.4553 22 6 4.3641 -1.6321 -0.5364 23 6 3.8526 -1.9779 0.7002 24 6 4.6016 -2.7896 1.5382 25 6 5.8424 -3.2255 1.0986 26 6 6.2906 -2.8344 -0.1486 27 7 5.5487 -2.0650 -0.9213 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8465 0.5143 0.8018 34 1 3.9777 2.1685 0.1578 35 1 3.7594 1.0002 -3.3490 36 1 2.4233 1.5908 -2.3318 37 1 2.6108 3.6735 -1.1153 38 1 3.6652 5.8881 -0.9828 39 1 5.0599 7.4978 0.8244 40 1 6.8988 4.4588 -3.4460 41 1 5.8219 2.2535 -3.5469 42 1 3.7191 -1.0588 -2.4882 43 1 2.5009 -0.8387 -1.2092 44 1 2.8816 -1.6205 1.0097 45 1 4.2272 -3.0763 2.5098 46 1 6.4527 -3.8593 1.7249 47 1 7.2580 -3.1657 -0.4963 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347273052.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:41 Heat of formation + Delta-G solvation = 22.408716 kcal Electronic energy + Delta-G solvation = -27600.168300 eV Core-core repulsion = 23941.024295 eV Total energy + Delta-G solvation = -3659.144005 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.19981 -38.86922 -37.50072 -36.10578 -33.66249 -32.42952 -31.83265 -30.31808 -29.58713 -28.93760 -27.04289 -26.50696 -24.86248 -23.76536 -23.30239 -22.10084 -20.95174 -20.57906 -19.40213 -17.25755 -16.87021 -16.58332 -16.49557 -15.93726 -15.69873 -15.23773 -15.14106 -14.77271 -14.35504 -14.21688 -13.75677 -13.46148 -13.26811 -13.12813 -13.01637 -12.46734 -12.23182 -12.12589 -11.95653 -11.73001 -11.61486 -11.59149 -11.34852 -11.26436 -11.03024 -10.92925 -10.80509 -10.45955 -10.25812 -9.75875 -9.61386 -9.53473 -9.27793 -9.22294 -9.16209 -8.88888 -7.74944 -7.39903 -7.18718 -6.67126 -4.33320 1.21530 1.40138 2.75708 3.08943 3.10922 3.14818 3.18388 3.70123 3.89033 3.97095 4.44877 4.56250 4.77753 4.88345 4.93816 5.13920 5.15771 5.21433 5.28003 5.33236 5.37034 5.48240 5.52995 5.59723 5.69218 5.76058 5.81211 5.88521 5.93470 6.12284 6.17854 6.25769 6.28060 6.34431 6.39974 6.41360 6.48976 6.83560 6.97446 7.08720 7.13050 7.29106 7.41385 7.50701 7.53684 7.66693 7.91738 8.09925 8.16537 8.21570 8.35213 8.68430 8.94644 9.01207 10.26928 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.014609 B = 0.003070 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.175952 B = 9118.074645 C = 9792.243878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.385 6.385 3 C 0.017 3.983 4 C 0.056 3.944 5 N -0.515 5.515 6 C 0.116 3.884 7 C -0.199 4.199 8 C -0.101 4.101 9 C -0.158 4.158 10 C 0.111 3.889 11 C -0.464 4.464 12 H 0.075 0.925 13 C 0.073 3.927 14 N -0.804 5.804 15 Si 0.909 3.091 16 H -0.262 1.262 17 H -0.274 1.274 18 H -0.275 1.275 19 C -0.222 4.222 20 C -0.071 4.071 21 C 0.081 3.919 22 C 0.152 3.848 23 C -0.163 4.163 24 C -0.083 4.083 25 C -0.185 4.185 26 C 0.095 3.905 27 N -0.469 5.469 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.066 0.934 36 H 0.030 0.970 37 H 0.082 0.918 38 H 0.118 0.882 39 H 0.277 0.723 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.140 0.860 45 H 0.128 0.872 46 H 0.128 0.872 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.977 -15.293 3.690 17.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.304 6.304 3 C -0.061 4.061 4 C -0.072 4.072 5 N -0.238 5.238 6 C -0.010 4.010 7 C -0.201 4.201 8 C -0.119 4.119 9 C -0.177 4.177 10 C 0.109 3.891 11 C -0.494 4.494 12 H 0.094 0.906 13 C -0.142 4.142 14 N -0.431 5.431 15 Si 0.734 3.266 16 H -0.185 1.185 17 H -0.199 1.199 18 H -0.201 1.201 19 C -0.241 4.241 20 C -0.090 4.090 21 C -0.046 4.046 22 C 0.014 3.986 23 C -0.183 4.183 24 C -0.109 4.109 25 C -0.205 4.205 26 C -0.062 4.062 27 N -0.178 5.178 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.122 0.878 35 H 0.084 0.916 36 H 0.047 0.953 37 H 0.100 0.900 38 H 0.136 0.864 39 H 0.088 0.912 40 H 0.109 0.891 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.158 0.842 45 H 0.146 0.854 46 H 0.146 0.854 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.098 -15.136 3.074 16.605 hybrid contribution -0.987 0.807 1.218 1.763 sum -7.085 -14.329 4.292 16.551 Atomic orbital electron populations 1.22740 0.82130 1.02227 0.99991 1.87883 1.19063 1.28569 1.94900 1.23583 0.96747 0.84571 1.01167 1.22368 0.89615 1.02680 0.92550 1.62182 1.59343 1.00073 1.02166 1.20840 0.95678 0.91966 0.92499 1.18873 0.99406 0.93455 1.08374 1.20538 0.98065 0.94171 0.99177 1.21314 0.96173 0.96126 1.04128 1.17632 0.90248 0.92124 0.89138 1.19611 1.26992 0.99824 1.03014 0.90634 1.25862 0.93497 1.00161 0.94730 1.69803 1.33757 1.36734 1.02768 0.86256 0.79007 0.82077 0.79305 1.18538 1.19903 1.20058 1.21044 1.00568 0.93577 1.08927 1.20359 0.94441 0.95720 0.98456 1.21444 0.97511 0.87695 0.97955 1.21234 0.90747 0.93727 0.92896 1.22176 1.01965 0.99141 0.95039 1.21547 0.94247 0.95732 0.99360 1.22072 0.97439 1.02730 0.98225 1.22739 0.98943 0.93685 0.90820 1.67542 1.05313 1.09141 1.35798 0.94263 0.94202 0.90043 0.93107 0.91842 0.90873 0.87833 0.91578 0.95252 0.90029 0.86443 0.91203 0.89121 0.89363 0.90358 0.89334 0.84214 0.85389 0.85379 0.83214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.65 6.14 -35.23 -0.22 -4.87 16 3 C 0.02 0.23 5.25 37.16 0.20 0.43 16 4 C 0.06 0.90 5.24 -3.82 -0.02 0.88 16 5 N -0.51 -8.67 4.65 -237.52 -1.10 -9.77 16 6 C 0.12 2.03 4.80 -4.98 -0.02 2.00 16 7 C -0.20 -4.21 4.90 -104.33 -0.51 -4.72 16 8 C -0.10 -2.23 8.02 -39.66 -0.32 -2.55 16 9 C -0.16 -4.01 8.66 -38.87 -0.34 -4.35 16 10 C 0.11 2.95 5.55 -106.83 -0.59 2.36 16 11 C -0.46 -12.40 9.06 -37.75 -0.34 -12.74 16 12 H 0.08 1.96 7.87 -52.48 -0.41 1.54 16 13 C 0.07 1.86 5.26 -17.34 -0.09 1.76 16 14 N -0.80 -20.84 10.84 55.55 0.60 -20.23 16 15 Si 0.91 18.90 29.57 -169.99 -5.03 13.88 16 16 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 17 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 18 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 19 C -0.22 -5.50 9.80 -38.87 -0.38 -5.88 16 20 C -0.07 -1.61 9.67 -39.66 -0.38 -1.99 16 21 C 0.08 1.20 5.07 -4.98 -0.03 1.18 16 22 C 0.15 2.26 5.82 -82.59 -0.48 1.78 16 23 C -0.16 -2.08 8.33 -39.44 -0.33 -2.40 16 24 C -0.08 -0.91 10.18 -39.28 -0.40 -1.31 16 25 C -0.18 -1.99 10.11 -39.44 -0.40 -2.39 16 26 C 0.10 1.21 11.18 -17.55 -0.20 1.02 16 27 N -0.47 -7.35 10.27 -9.47 -0.10 -7.45 16 28 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.92 4.67 -51.93 -0.24 0.67 16 33 H 0.07 1.15 6.22 -51.93 -0.32 0.83 16 34 H 0.10 1.95 6.42 -51.93 -0.33 1.62 16 35 H 0.07 1.12 7.80 -51.93 -0.41 0.71 16 36 H 0.03 0.48 5.66 -51.93 -0.29 0.19 16 37 H 0.08 1.61 6.41 -52.48 -0.34 1.28 16 38 H 0.12 3.11 6.24 -52.48 -0.33 2.78 16 39 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 40 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 41 H 0.09 1.85 8.06 -52.48 -0.42 1.42 16 42 H 0.08 1.17 7.82 -51.93 -0.41 0.76 16 43 H 0.09 1.22 4.56 -51.93 -0.24 0.99 16 44 H 0.14 1.67 6.69 -52.49 -0.35 1.32 16 45 H 0.13 1.06 8.06 -52.48 -0.42 0.63 16 46 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 47 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 372.21 15.07 5.61 5.61 Total: -1.00 -28.84 372.21 -10.36 -39.20 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -6.61 Total: 9.21 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: -3.52 Total: -25.57 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: -0.60 Total: -37.45 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.22 Total: -4.87 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.84 -10.36 -39.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347273052.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.611 kcal (2) G-P(sol) polarization free energy of solvation -28.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds