Wall clock time and date at job start Tue Mar 31 2020 14:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 113.99866 * 2 1 4 4 C 1.52997 * 109.47052 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.47009 * 68.79793 * 4 3 2 6 6 C 1.46900 * 110.99565 * 56.19545 * 5 4 3 7 7 C 1.50694 * 109.47353 * 66.04951 * 6 5 4 8 8 C 1.38634 * 119.74683 * 269.72490 * 7 6 5 9 9 C 1.37620 * 120.24635 * 179.72048 * 8 7 6 10 10 C 1.40711 * 119.74760 * 0.57104 * 9 8 7 11 11 C 1.41389 * 120.24697 * 179.68366 * 10 9 8 12 12 H 1.08006 * 120.00082 * 209.19888 * 11 10 9 13 13 C 1.39938 * 120.00420 * 29.19544 * 11 10 9 14 14 N 1.30830 * 119.99639 * 10.25160 * 13 11 10 15 15 Si 1.86806 * 120.00648 * 190.24783 * 13 11 10 16 16 H 1.48504 * 109.46584 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47100 * 119.99652 * 15 13 11 18 18 H 1.48500 * 109.47156 * 240.00174 * 15 13 11 19 19 C 1.40722 * 119.50781 * 359.70262 * 10 9 8 20 20 C 1.37612 * 119.74605 * 359.97438 * 19 10 9 21 21 C 1.46899 * 111.00004 * 292.24486 * 5 4 3 22 22 C 1.50701 * 109.46862 * 288.37270 * 21 5 4 23 23 C 1.38224 * 119.61996 * 95.58848 * 22 21 5 24 24 C 1.38636 * 119.15996 * 180.02562 * 23 22 21 25 25 C 1.38666 * 118.42045 * 359.97438 * 24 23 22 26 26 C 1.38187 * 119.16418 * 0.28081 * 25 24 23 27 27 N 1.31858 * 119.61583 * 275.61124 * 22 21 5 28 28 H 1.09006 * 109.47394 * 299.99984 * 1 2 3 29 29 H 1.09002 * 109.47132 * 60.00085 * 1 2 3 30 30 H 1.08997 * 109.47110 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46612 * 59.99776 * 3 2 1 32 32 H 1.08997 * 109.47251 * 299.99901 * 3 2 1 33 33 H 1.09000 * 109.47489 * 308.79830 * 4 3 2 34 34 H 1.08999 * 109.47190 * 188.79858 * 4 3 2 35 35 H 1.09006 * 109.46792 * 186.05002 * 6 5 4 36 36 H 1.09000 * 109.47100 * 306.04431 * 6 5 4 37 37 H 1.08003 * 119.87750 * 359.97380 * 8 7 6 38 38 H 1.08004 * 120.12899 * 180.27708 * 9 8 7 39 39 H 0.97002 * 120.00091 * 180.02562 * 14 13 11 40 40 H 1.08003 * 120.12743 * 179.97438 * 19 10 9 41 41 H 1.08005 * 119.87860 * 179.97438 * 20 19 10 42 42 H 1.08994 * 109.47066 * 168.37379 * 21 5 4 43 43 H 1.08999 * 109.47155 * 48.36855 * 21 5 4 44 44 H 1.07997 * 120.42077 * 0.04280 * 23 22 21 45 45 H 1.08005 * 120.78666 * 180.02562 * 24 23 22 46 46 H 1.08000 * 120.41916 * 180.02562 * 25 24 23 47 47 H 1.08002 * 119.61717 * 179.70435 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9845 0.6465 -1.2904 6 6 3.5051 1.4778 -2.4026 7 6 4.1576 2.8344 -2.3334 8 6 3.5491 3.8546 -1.6187 9 6 4.1387 5.0959 -1.5439 10 6 5.3577 5.3308 -2.2062 11 6 5.9694 6.6040 -2.1419 12 1 6.5880 6.9477 -2.9578 13 6 5.7733 7.4187 -1.0213 14 7 5.1962 6.9330 0.0477 15 14 6.3355 9.1999 -1.0513 16 1 6.9539 9.5015 -2.3674 17 1 5.1673 10.0914 -0.8379 18 1 7.3319 9.4227 0.0270 19 6 5.9633 4.2894 -2.9334 20 6 5.3591 3.0543 -2.9890 21 6 3.5590 -0.7498 -1.4553 22 6 4.3641 -1.6321 -0.5364 23 6 3.8526 -1.9779 0.7002 24 6 4.6016 -2.7896 1.5382 25 6 5.8424 -3.2255 1.0986 26 6 6.2906 -2.8344 -0.1486 27 7 5.5487 -2.0650 -0.9213 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8465 0.5143 0.8018 34 1 3.9777 2.1685 0.1578 35 1 3.7594 1.0002 -3.3490 36 1 2.4233 1.5908 -2.3318 37 1 2.6108 3.6735 -1.1153 38 1 3.6652 5.8881 -0.9828 39 1 5.0599 7.4978 0.8244 40 1 6.8988 4.4588 -3.4460 41 1 5.8219 2.2535 -3.5469 42 1 3.7191 -1.0588 -2.4882 43 1 2.5009 -0.8387 -1.2092 44 1 2.8816 -1.6205 1.0097 45 1 4.2272 -3.0763 2.5098 46 1 6.4527 -3.8593 1.7249 47 1 7.2580 -3.1657 -0.4963 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347273052.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:40 Heat of formation + Delta-G solvation = 6.473645 kcal Electronic energy + Delta-G solvation = -27600.859296 eV Core-core repulsion = 23941.024295 eV Total energy + Delta-G solvation = -3659.835002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.22353 -40.13065 -39.02413 -37.36669 -35.47847 -33.42195 -32.98554 -31.86669 -31.27306 -30.36328 -28.56679 -27.41359 -26.21015 -25.14362 -24.28964 -23.29423 -22.80173 -22.00690 -20.91827 -19.18295 -17.88007 -17.61303 -17.56089 -17.09373 -16.90723 -16.66348 -16.35207 -15.89788 -15.71309 -15.58936 -15.40948 -14.91976 -14.48753 -14.28897 -14.09675 -13.92503 -13.74834 -13.42780 -13.25083 -13.21946 -12.90364 -12.84879 -12.75703 -12.62903 -12.54123 -12.40861 -12.11774 -12.01533 -11.86084 -11.35755 -11.22760 -11.05170 -10.68959 -10.48500 -10.21369 -9.85668 -9.31459 -9.13800 -8.92679 -8.55278 -6.32475 0.27089 0.49177 0.97382 1.19394 1.38222 1.49837 1.52698 2.22960 2.65874 2.78942 2.93252 3.38940 3.56026 3.80211 3.97624 4.07466 4.10928 4.11581 4.27238 4.32465 4.33323 4.36873 4.46132 4.55215 4.55507 4.59539 4.61937 4.70455 4.72782 4.84501 4.87473 4.94297 4.99164 5.06916 5.10679 5.15324 5.20947 5.35809 5.37461 5.41662 5.51957 5.75666 5.92321 5.98782 6.12531 6.14389 6.19174 6.30111 6.34839 6.44872 6.74765 6.99176 7.07615 7.24654 8.40743 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.014609 B = 0.003070 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.175952 B = 9118.074645 C = 9792.243878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.390 6.390 3 C 0.029 3.971 4 C 0.062 3.938 5 N -0.531 5.531 6 C 0.123 3.877 7 C -0.183 4.183 8 C -0.094 4.094 9 C -0.179 4.179 10 C 0.078 3.922 11 C -0.504 4.504 12 H 0.069 0.931 13 C 0.033 3.967 14 N -0.835 5.835 15 Si 0.982 3.018 16 H -0.261 1.261 17 H -0.263 1.263 18 H -0.268 1.268 19 C -0.239 4.239 20 C -0.078 4.078 21 C 0.090 3.910 22 C 0.127 3.873 23 C -0.167 4.167 24 C -0.083 4.083 25 C -0.176 4.176 26 C 0.077 3.923 27 N -0.507 5.507 28 H 0.047 0.953 29 H 0.041 0.959 30 H 0.101 0.899 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.046 0.954 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.285 0.715 40 H 0.090 0.910 41 H 0.106 0.894 42 H 0.071 0.929 43 H 0.101 0.899 44 H 0.147 0.853 45 H 0.160 0.840 46 H 0.162 0.838 47 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.973 -17.024 4.927 19.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.310 6.310 3 C -0.049 4.049 4 C -0.067 4.067 5 N -0.254 5.254 6 C -0.004 4.004 7 C -0.185 4.185 8 C -0.113 4.113 9 C -0.199 4.199 10 C 0.076 3.924 11 C -0.534 4.534 12 H 0.087 0.913 13 C -0.180 4.180 14 N -0.462 5.462 15 Si 0.803 3.197 16 H -0.185 1.185 17 H -0.188 1.188 18 H -0.192 1.192 19 C -0.259 4.259 20 C -0.097 4.097 21 C -0.037 4.037 22 C -0.011 4.011 23 C -0.187 4.187 24 C -0.109 4.109 25 C -0.196 4.196 26 C -0.080 4.080 27 N -0.217 5.217 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.120 0.880 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.124 0.876 38 H 0.119 0.881 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.124 0.876 42 H 0.090 0.910 43 H 0.118 0.882 44 H 0.164 0.836 45 H 0.178 0.822 46 H 0.180 0.820 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -7.107 -16.892 4.307 18.825 hybrid contribution -0.714 1.099 0.868 1.572 sum -7.822 -15.793 5.175 18.368 Atomic orbital electron populations 1.22939 0.80313 1.03779 1.00506 1.87837 1.20846 1.27338 1.94939 1.23286 0.95039 0.85397 1.01171 1.22167 0.91360 1.00775 0.92351 1.62045 1.60193 1.01163 1.01995 1.20746 0.96240 0.89988 0.93395 1.19272 0.98346 0.95032 1.05831 1.20749 0.98727 0.93144 0.98644 1.21281 0.96432 0.97144 1.04997 1.17949 0.91141 0.92893 0.90378 1.19822 1.28591 1.01084 1.03950 0.91256 1.26678 0.93274 1.04268 0.93803 1.69861 1.34582 1.38392 1.03363 0.85158 0.78819 0.76414 0.79270 1.18478 1.18799 1.19250 1.21199 1.00989 0.94338 1.09347 1.20626 0.95020 0.95335 0.98695 1.21388 0.98276 0.86189 0.97875 1.21257 0.91087 0.94821 0.93938 1.22272 1.02432 0.99432 0.94556 1.21972 0.94040 0.94633 1.00279 1.22445 0.97546 1.01960 0.97605 1.23178 0.99568 0.93575 0.91682 1.67470 1.06179 1.10629 1.37435 0.93442 0.93992 0.88026 0.92307 0.92554 0.90641 0.91114 0.90793 0.93569 0.87563 0.88106 0.90489 0.89155 0.87593 0.91021 0.88173 0.83578 0.82242 0.82047 0.81447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 11.01 113.37 1.25 1.57 16 2 O -0.39 -8.49 6.14 -148.98 -0.92 -9.41 16 3 C 0.03 0.74 5.25 71.98 0.38 1.12 16 4 C 0.06 1.94 5.24 86.30 0.45 2.39 16 5 N -0.53 -17.43 4.65 -905.37 -4.21 -21.64 16 6 C 0.12 4.13 4.80 85.56 0.41 4.54 16 7 C -0.18 -7.71 4.90 -19.68 -0.10 -7.80 16 8 C -0.09 -4.20 8.02 22.22 0.18 -4.02 16 9 C -0.18 -9.43 8.66 22.73 0.20 -9.23 16 10 C 0.08 4.36 5.55 -21.29 -0.12 4.24 16 11 C -0.50 -28.17 9.06 23.46 0.21 -27.96 16 12 H 0.07 3.78 7.87 -2.91 -0.02 3.76 16 13 C 0.03 1.69 5.26 85.25 0.45 2.14 16 14 N -0.83 -44.57 10.84 21.82 0.24 -44.33 16 15 Si 0.98 39.50 29.57 68.60 2.03 41.53 16 16 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 17 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 18 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 19 C -0.24 -12.30 9.80 22.73 0.22 -12.08 16 20 C -0.08 -3.57 9.67 22.22 0.21 -3.36 16 21 C 0.09 2.56 5.07 85.56 0.43 2.99 16 22 C 0.13 3.63 5.82 42.55 0.25 3.87 16 23 C -0.17 -3.91 8.33 22.36 0.19 -3.73 16 24 C -0.08 -1.58 10.18 22.47 0.23 -1.35 16 25 C -0.18 -3.28 10.11 22.36 0.23 -3.05 16 26 C 0.08 1.83 11.18 84.67 0.95 2.78 16 27 N -0.51 -15.54 10.27 -183.88 -1.89 -17.43 16 28 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.06 1.52 4.67 -2.39 -0.01 1.51 16 33 H 0.08 2.31 6.22 -2.39 -0.01 2.30 16 34 H 0.07 2.69 6.42 -2.39 -0.02 2.67 16 35 H 0.07 2.39 7.80 -2.38 -0.02 2.37 16 36 H 0.05 1.42 5.66 -2.39 -0.01 1.41 16 37 H 0.11 4.15 6.41 -2.91 -0.02 4.13 16 38 H 0.10 5.58 6.24 -2.91 -0.02 5.56 16 39 H 0.28 13.74 8.30 -92.71 -0.77 12.97 16 40 H 0.09 4.49 8.06 -2.91 -0.02 4.47 16 41 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 42 H 0.07 2.09 7.82 -2.39 -0.02 2.07 16 43 H 0.10 2.58 4.56 -2.40 -0.01 2.57 16 44 H 0.15 3.15 6.69 -2.91 -0.02 3.13 16 45 H 0.16 1.96 8.06 -2.91 -0.02 1.93 16 46 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 47 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -65.04 372.21 2.24 -62.80 By element: Atomic # 1 Polarization: 34.44 SS G_CDS: 0.97 Total: 35.41 kcal Atomic # 6 Polarization: -52.95 SS G_CDS: 6.02 Total: -46.93 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -5.86 Total: -83.40 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -0.92 Total: -9.41 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -65.04 2.24 -62.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347273052.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.275 kcal (2) G-P(sol) polarization free energy of solvation -65.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds