Wall clock time and date at job start Tue Mar 31 2020 14:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53128 * 109.51906 * 2 1 4 4 C 1.53040 * 109.27503 * 182.43984 * 3 2 1 5 5 N 1.46841 * 109.52652 * 59.17689 * 4 3 2 6 6 C 1.38687 * 111.00222 * 174.15286 * 5 4 3 7 7 N 1.31682 * 119.79016 * 36.57889 * 6 5 4 8 8 C 1.34120 * 119.79191 * 179.77302 * 7 6 5 9 9 C 1.40408 * 120.85813 * 179.73326 * 8 7 6 10 10 C 1.36219 * 119.75987 * 180.24926 * 9 8 7 11 11 C 1.39241 * 120.90059 * 0.27643 * 10 9 8 12 12 C 1.36216 * 120.89568 * 359.95645 * 11 10 9 13 13 C 1.40414 * 119.76582 * 0.02562 * 12 11 10 14 14 N 1.34110 * 120.85728 * 179.97438 * 13 12 11 15 15 C 1.31687 * 119.78553 * 180.02562 * 14 13 12 16 16 N 1.38689 * 119.79222 * 179.97438 * 15 14 13 17 17 C 1.46503 * 120.00314 * 354.92552 * 16 15 14 18 18 C 1.50695 * 109.47107 * 180.02562 * 17 16 15 19 19 H 1.08005 * 120.00580 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99938 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00273 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00339 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47189 * 59.99770 * 22 20 18 24 24 H 1.48494 * 109.47494 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47082 * 300.00199 * 22 20 18 26 26 C 1.46840 * 111.20133 * 298.26222 * 5 4 3 27 27 C 1.53039 * 109.52703 * 61.73598 * 26 5 4 28 28 H 1.09002 * 109.47293 * 60.00462 * 1 2 3 29 29 H 1.09002 * 109.46707 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47691 * 299.99834 * 1 2 3 31 31 H 1.08998 * 109.57504 * 120.15228 * 2 1 3 32 32 H 1.08995 * 109.50291 * 62.49701 * 3 2 1 33 33 H 1.08998 * 109.50098 * 302.37824 * 3 2 1 34 34 H 1.09000 * 109.46416 * 299.16136 * 4 3 2 35 35 H 1.09008 * 109.45904 * 179.19492 * 4 3 2 36 36 H 1.07996 * 120.12426 * 0.52790 * 9 8 7 37 37 H 1.08000 * 119.54971 * 180.25383 * 10 9 8 38 38 H 1.07994 * 119.55169 * 179.97438 * 11 10 9 39 39 H 1.08007 * 120.11463 * 180.02562 * 12 11 10 40 40 H 0.97008 * 120.00052 * 174.93361 * 16 15 14 41 41 H 1.08997 * 109.46811 * 300.00277 * 17 16 15 42 42 H 1.09000 * 109.46863 * 59.99932 * 17 16 15 43 43 H 0.96996 * 120.00689 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.46353 * 181.75948 * 26 5 4 45 45 H 1.09010 * 109.45782 * 301.72025 * 26 5 4 46 46 H 1.09004 * 109.50028 * 180.88544 * 27 26 5 47 47 H 1.09001 * 109.49948 * 60.76963 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4433 0.0000 4 6 3.5708 1.4372 -0.0615 5 7 4.0103 0.7431 -1.2786 6 6 5.3856 0.8329 -1.4328 7 7 6.1671 0.7873 -0.3739 8 6 7.4974 0.8695 -0.5234 9 6 8.3511 0.8289 0.5905 10 6 9.6987 0.9193 0.4133 11 6 10.2447 1.0577 -0.8601 12 6 9.4458 1.1054 -1.9623 13 6 8.0521 1.0147 -1.8175 14 7 7.2449 1.0598 -2.8876 15 6 5.9407 0.9734 -2.7273 16 7 5.1059 1.0205 -3.8338 17 6 5.6654 1.2771 -5.1633 18 6 4.5562 1.2778 -6.1834 19 1 3.5366 1.1039 -5.8728 20 6 4.8433 1.4992 -7.5137 21 7 6.0850 1.7104 -7.8922 22 14 3.4686 1.4993 -8.7785 23 1 2.4863 2.5610 -8.4419 24 1 4.0357 1.7596 -10.1260 25 1 2.7907 0.1780 -8.7729 26 6 3.5709 -0.6580 -1.2789 27 6 2.0417 -0.7146 -1.2538 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8952 -0.5159 0.8880 32 1 1.7160 1.9448 0.9113 33 1 1.6446 1.9701 -0.8677 34 1 3.9674 0.9223 0.8135 35 1 3.9377 2.4636 -0.0761 36 1 7.9413 0.7219 1.5840 37 1 10.3525 0.8836 1.2722 38 1 11.3162 1.1279 -0.9755 39 1 9.8828 1.2126 -2.9442 40 1 4.1514 0.8836 -3.7275 41 1 6.1626 2.2470 -5.1671 42 1 6.3865 0.4981 -5.4105 43 1 6.2869 1.8666 -8.8280 44 1 3.9379 -1.1536 -2.1776 45 1 3.9676 -1.1632 -0.3981 46 1 1.7163 -1.7548 -1.2381 47 1 1.6448 -0.2217 -2.1413 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362687997.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:53 Heat of formation + Delta-G solvation = 65.254312 kcal Electronic energy + Delta-G solvation = -27761.643553 eV Core-core repulsion = 24136.650223 eV Total energy + Delta-G solvation = -3624.993330 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.12806 -39.25498 -37.35928 -35.53777 -34.57526 -33.34911 -32.38033 -30.94550 -30.00220 -29.52159 -27.61796 -26.96467 -24.28768 -23.38608 -23.00448 -22.17347 -21.91350 -21.37218 -19.77541 -18.54273 -17.88115 -17.22152 -16.25166 -15.51030 -15.37996 -15.19290 -14.71195 -14.62578 -14.46991 -14.27889 -14.06381 -13.93522 -13.59280 -13.26919 -13.12751 -12.86842 -12.47666 -12.15880 -12.03573 -12.03138 -11.71506 -11.50294 -11.40793 -11.27142 -11.14066 -11.00237 -10.91457 -10.83935 -10.79853 -10.45033 -10.35497 -10.26057 -9.41723 -9.35962 -9.00435 -8.54939 -8.46736 -8.14281 -6.90680 -6.17095 -4.23608 0.61919 1.18355 2.35478 3.18833 3.25577 3.30397 3.31727 3.53824 3.94766 4.34501 4.44692 4.50153 4.65700 4.67467 4.72991 4.74927 4.95865 5.10436 5.18663 5.19421 5.27288 5.31726 5.37089 5.47773 5.53555 5.54541 5.56854 5.62759 5.68011 5.78628 5.82780 5.89138 5.94550 6.05743 6.07990 6.11051 6.22667 6.36113 6.37557 6.54133 6.62470 6.84951 6.92120 7.07395 7.32129 7.50990 7.57968 7.70996 7.92974 7.96314 8.31128 8.66832 8.93226 9.41920 10.92891 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.007136 B = 0.005104 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3922.958366 B = 5484.194702 C = 9106.578071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.113 4.113 4 C 0.066 3.934 5 N -0.475 5.475 6 C 0.241 3.759 7 N -0.441 5.441 8 C 0.016 3.984 9 C -0.062 4.062 10 C -0.144 4.144 11 C -0.094 4.094 12 C -0.106 4.106 13 C 0.146 3.854 14 N -0.512 5.512 15 C 0.405 3.595 16 N -0.665 5.665 17 C 0.255 3.745 18 C -0.544 4.544 19 H 0.063 0.937 20 C 0.066 3.934 21 N -0.885 5.885 22 Si 0.903 3.097 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.060 3.940 27 C -0.111 4.111 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.134 0.866 40 H 0.410 0.590 41 H 0.028 0.972 42 H 0.031 0.969 43 H 0.266 0.734 44 H 0.079 0.921 45 H 0.043 0.957 46 H 0.070 0.930 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.823 -3.272 18.002 18.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.151 4.151 4 C -0.061 4.061 5 N -0.198 5.198 6 C -0.016 4.016 7 N -0.157 5.157 8 C -0.109 4.109 9 C -0.082 4.082 10 C -0.165 4.165 11 C -0.114 4.114 12 C -0.126 4.126 13 C 0.020 3.980 14 N -0.240 5.240 15 C 0.147 3.853 16 N -0.292 5.292 17 C 0.134 3.866 18 C -0.582 4.582 19 H 0.081 0.919 20 C -0.138 4.138 21 N -0.522 5.522 22 Si 0.730 3.270 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.067 4.067 27 C -0.149 4.149 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.152 0.848 40 H 0.248 0.752 41 H 0.046 0.954 42 H 0.049 0.951 43 H 0.076 0.924 44 H 0.097 0.903 45 H 0.061 0.939 46 H 0.088 0.912 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.721 -2.960 17.269 17.731 hybrid contribution -0.616 -0.327 -0.106 0.706 sum -3.338 -3.286 17.163 17.791 Atomic orbital electron populations 1.21802 0.95056 1.01568 1.01828 1.21191 0.95619 0.96260 0.98191 1.21700 0.94400 0.96544 1.02414 1.21998 0.95159 0.98811 0.90162 1.59670 1.05937 1.14967 1.39225 1.20518 0.90010 1.01663 0.89387 1.68470 1.04516 1.10394 1.32302 1.19077 0.89637 1.08309 0.93901 1.20579 0.92600 0.97938 0.97058 1.20680 0.94705 1.03749 0.97334 1.20829 0.99819 0.98526 0.92223 1.20715 0.90711 1.01436 0.99762 1.19310 0.94705 0.95537 0.88480 1.68554 1.01465 1.23697 1.30271 1.19411 0.88883 0.90107 0.86912 1.45521 1.08740 1.69173 1.05733 1.19200 0.94696 0.97086 0.75581 1.21170 0.93648 1.51295 0.92098 0.91937 1.24903 0.95840 0.94678 0.98332 1.69957 1.17956 1.47061 1.17263 0.86492 0.81699 0.78679 0.80159 1.20044 1.21087 1.20060 1.22190 0.96199 0.86605 1.01704 1.21677 0.93751 1.00673 0.98801 0.92399 0.92828 0.92876 0.91545 0.91412 0.90771 0.93043 0.90856 0.85691 0.85888 0.85665 0.84808 0.75242 0.95375 0.95124 0.92419 0.90264 0.93871 0.91154 0.90400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.20 37.16 0.34 -0.85 16 2 C -0.09 -0.89 2.79 -90.50 -0.25 -1.15 16 3 C -0.11 -1.17 5.38 -26.64 -0.14 -1.31 16 4 C 0.07 0.85 4.92 -3.84 -0.02 0.83 16 5 N -0.47 -7.04 3.77 -172.74 -0.65 -7.70 16 6 C 0.24 4.29 5.60 -155.01 -0.87 3.42 16 7 N -0.44 -7.69 9.34 -9.86 -0.09 -7.78 16 8 C 0.02 0.27 6.58 -84.79 -0.56 -0.29 16 9 C -0.06 -0.87 9.97 -39.49 -0.39 -1.27 16 10 C -0.14 -1.72 9.95 -39.94 -0.40 -2.12 16 11 C -0.09 -1.18 9.95 -39.94 -0.40 -1.58 16 12 C -0.11 -1.69 9.97 -39.49 -0.39 -2.08 16 13 C 0.15 2.77 6.58 -84.79 -0.56 2.21 16 14 N -0.51 -11.09 9.66 -9.86 -0.10 -11.19 16 15 C 0.41 8.36 7.51 -155.00 -1.16 7.20 16 16 N -0.66 -14.32 5.67 -61.17 -0.35 -14.66 16 17 C 0.26 6.61 5.45 -5.19 -0.03 6.58 16 18 C -0.54 -14.59 9.28 -34.44 -0.32 -14.91 16 19 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 20 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 21 N -0.89 -25.64 13.29 55.43 0.74 -24.90 16 22 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 C 0.06 0.78 5.40 -3.84 -0.02 0.76 16 27 C -0.11 -1.17 5.38 -26.65 -0.14 -1.32 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.05 0.68 7.80 -51.93 -0.40 0.27 16 35 H 0.07 1.01 8.10 -51.92 -0.42 0.59 16 36 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.13 2.07 8.06 -52.48 -0.42 1.65 16 40 H 0.41 8.13 7.59 -40.82 -0.31 7.82 16 41 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 45 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 381.26 15.07 5.75 5.75 Total: -1.00 -29.94 381.26 -12.57 -42.51 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -7.43 Total: 6.40 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -5.41 Total: -4.15 kcal Atomic # 7 Polarization: -65.78 SS G_CDS: -0.45 Total: -66.22 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.94 -12.57 -42.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362687997.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.762 kcal (2) G-P(sol) polarization free energy of solvation -29.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds