Wall clock time and date at job start Tue Mar 31 2020 14:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53128 * 109.51906 * 2 1 4 4 C 1.53040 * 109.27503 * 182.43984 * 3 2 1 5 5 N 1.46841 * 109.52652 * 59.17689 * 4 3 2 6 6 C 1.38687 * 111.00222 * 174.15286 * 5 4 3 7 7 N 1.31682 * 119.79016 * 36.57889 * 6 5 4 8 8 C 1.34120 * 119.79191 * 179.77302 * 7 6 5 9 9 C 1.40408 * 120.85813 * 179.73326 * 8 7 6 10 10 C 1.36219 * 119.75987 * 180.24926 * 9 8 7 11 11 C 1.39241 * 120.90059 * 0.27643 * 10 9 8 12 12 C 1.36216 * 120.89568 * 359.95645 * 11 10 9 13 13 C 1.40414 * 119.76582 * 0.02562 * 12 11 10 14 14 N 1.34110 * 120.85728 * 179.97438 * 13 12 11 15 15 C 1.31687 * 119.78553 * 180.02562 * 14 13 12 16 16 N 1.38689 * 119.79222 * 179.97438 * 15 14 13 17 17 C 1.46503 * 120.00314 * 354.92552 * 16 15 14 18 18 C 1.50695 * 109.47107 * 180.02562 * 17 16 15 19 19 H 1.08005 * 120.00580 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99938 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00273 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00339 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47189 * 59.99770 * 22 20 18 24 24 H 1.48494 * 109.47494 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47082 * 300.00199 * 22 20 18 26 26 C 1.46840 * 111.20133 * 298.26222 * 5 4 3 27 27 C 1.53039 * 109.52703 * 61.73598 * 26 5 4 28 28 H 1.09002 * 109.47293 * 60.00462 * 1 2 3 29 29 H 1.09002 * 109.46707 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47691 * 299.99834 * 1 2 3 31 31 H 1.08998 * 109.57504 * 120.15228 * 2 1 3 32 32 H 1.08995 * 109.50291 * 62.49701 * 3 2 1 33 33 H 1.08998 * 109.50098 * 302.37824 * 3 2 1 34 34 H 1.09000 * 109.46416 * 299.16136 * 4 3 2 35 35 H 1.09008 * 109.45904 * 179.19492 * 4 3 2 36 36 H 1.07996 * 120.12426 * 0.52790 * 9 8 7 37 37 H 1.08000 * 119.54971 * 180.25383 * 10 9 8 38 38 H 1.07994 * 119.55169 * 179.97438 * 11 10 9 39 39 H 1.08007 * 120.11463 * 180.02562 * 12 11 10 40 40 H 0.97008 * 120.00052 * 174.93361 * 16 15 14 41 41 H 1.08997 * 109.46811 * 300.00277 * 17 16 15 42 42 H 1.09000 * 109.46863 * 59.99932 * 17 16 15 43 43 H 0.96996 * 120.00689 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.46353 * 181.75948 * 26 5 4 45 45 H 1.09010 * 109.45782 * 301.72025 * 26 5 4 46 46 H 1.09004 * 109.50028 * 180.88544 * 27 26 5 47 47 H 1.09001 * 109.49948 * 60.76963 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4433 0.0000 4 6 3.5708 1.4372 -0.0615 5 7 4.0103 0.7431 -1.2786 6 6 5.3856 0.8329 -1.4328 7 7 6.1671 0.7873 -0.3739 8 6 7.4974 0.8695 -0.5234 9 6 8.3511 0.8289 0.5905 10 6 9.6987 0.9193 0.4133 11 6 10.2447 1.0577 -0.8601 12 6 9.4458 1.1054 -1.9623 13 6 8.0521 1.0147 -1.8175 14 7 7.2449 1.0598 -2.8876 15 6 5.9407 0.9734 -2.7273 16 7 5.1059 1.0205 -3.8338 17 6 5.6654 1.2771 -5.1633 18 6 4.5562 1.2778 -6.1834 19 1 3.5366 1.1039 -5.8728 20 6 4.8433 1.4992 -7.5137 21 7 6.0850 1.7104 -7.8922 22 14 3.4686 1.4993 -8.7785 23 1 2.4863 2.5610 -8.4419 24 1 4.0357 1.7596 -10.1260 25 1 2.7907 0.1780 -8.7729 26 6 3.5709 -0.6580 -1.2789 27 6 2.0417 -0.7146 -1.2538 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8952 -0.5159 0.8880 32 1 1.7160 1.9448 0.9113 33 1 1.6446 1.9701 -0.8677 34 1 3.9674 0.9223 0.8135 35 1 3.9377 2.4636 -0.0761 36 1 7.9413 0.7219 1.5840 37 1 10.3525 0.8836 1.2722 38 1 11.3162 1.1279 -0.9755 39 1 9.8828 1.2126 -2.9442 40 1 4.1514 0.8836 -3.7275 41 1 6.1626 2.2470 -5.1671 42 1 6.3865 0.4981 -5.4105 43 1 6.2869 1.8666 -8.8280 44 1 3.9379 -1.1536 -2.1776 45 1 3.9676 -1.1632 -0.3981 46 1 1.7163 -1.7548 -1.2381 47 1 1.6448 -0.2217 -2.1413 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362687997.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:53 Heat of formation + Delta-G solvation = 48.232314 kcal Electronic energy + Delta-G solvation = -27762.381682 eV Core-core repulsion = 24136.650223 eV Total energy + Delta-G solvation = -3625.731459 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.47127 -40.33928 -38.63623 -37.00159 -35.85070 -34.92373 -34.09277 -31.91920 -31.15280 -30.98452 -28.80966 -28.56153 -25.81865 -24.59265 -24.14233 -23.71607 -23.07242 -22.70989 -20.72173 -19.93889 -19.21601 -18.74384 -17.92711 -16.87980 -16.70686 -16.66008 -16.34269 -15.68196 -15.52224 -15.39895 -15.14494 -15.05291 -14.86658 -14.76824 -14.66322 -14.06683 -14.03289 -13.43499 -13.05717 -13.00140 -12.93049 -12.85957 -12.70378 -12.59338 -12.57574 -12.47883 -12.34250 -12.19973 -12.13656 -11.63067 -11.47336 -11.30008 -11.21526 -10.92366 -10.53281 -10.27351 -9.85005 -9.35225 -8.48361 -8.27976 -6.43737 -0.66371 -0.15853 1.03151 1.42107 1.46090 1.54031 1.93515 2.20924 2.37281 2.51998 3.06320 3.11825 3.24698 3.37024 3.60482 3.80224 3.81572 3.87574 4.05762 4.12324 4.24676 4.32465 4.33005 4.41580 4.48753 4.57101 4.65484 4.74445 4.78623 4.85705 4.88706 5.01051 5.03877 5.06416 5.13689 5.19569 5.27121 5.28744 5.29745 5.30354 5.39289 5.48445 5.50511 5.57859 5.77790 5.80313 5.85221 5.97430 6.20105 6.34279 6.64573 6.71706 7.20399 7.32225 8.83613 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.007136 B = 0.005104 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3922.958366 B = 5484.194702 C = 9106.578071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C -0.106 4.106 4 C 0.069 3.931 5 N -0.480 5.480 6 C 0.240 3.760 7 N -0.437 5.437 8 C 0.004 3.996 9 C -0.071 4.071 10 C -0.119 4.119 11 C -0.070 4.070 12 C -0.134 4.134 13 C 0.108 3.892 14 N -0.550 5.550 15 C 0.383 3.617 16 N -0.673 5.673 17 C 0.284 3.716 18 C -0.558 4.558 19 H 0.076 0.924 20 C 0.010 3.990 21 N -0.927 5.927 22 Si 0.980 3.020 23 H -0.264 1.264 24 H -0.283 1.283 25 H -0.263 1.263 26 C 0.063 3.937 27 C -0.106 4.106 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.149 0.851 37 H 0.173 0.827 38 H 0.168 0.832 39 H 0.125 0.875 40 H 0.416 0.584 41 H -0.013 1.013 42 H -0.008 1.008 43 H 0.269 0.731 44 H 0.060 0.940 45 H 0.043 0.957 46 H 0.088 0.912 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.406 -3.769 20.689 21.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.108 4.108 3 C -0.144 4.144 4 C -0.058 4.058 5 N -0.203 5.203 6 C -0.016 4.016 7 N -0.153 5.153 8 C -0.121 4.121 9 C -0.091 4.091 10 C -0.139 4.139 11 C -0.090 4.090 12 C -0.154 4.154 13 C -0.016 4.016 14 N -0.278 5.278 15 C 0.127 3.873 16 N -0.303 5.303 17 C 0.161 3.839 18 C -0.596 4.596 19 H 0.094 0.906 20 C -0.190 4.190 21 N -0.565 5.565 22 Si 0.803 3.197 23 H -0.189 1.189 24 H -0.208 1.208 25 H -0.188 1.188 26 C -0.064 4.064 27 C -0.144 4.144 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.167 0.833 37 H 0.190 0.810 38 H 0.185 0.815 39 H 0.143 0.857 40 H 0.255 0.745 41 H 0.005 0.995 42 H 0.010 0.990 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.061 0.939 46 H 0.106 0.894 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.294 -3.467 20.030 20.593 hybrid contribution -0.135 -0.172 -0.729 0.761 sum -3.429 -3.639 19.301 19.938 Atomic orbital electron populations 1.21758 0.93608 1.02268 1.02170 1.21165 0.96699 0.95290 0.97611 1.21687 0.92133 0.97502 1.03074 1.22039 0.97032 0.97609 0.89122 1.59690 1.04172 1.16110 1.40376 1.20484 0.91379 1.01486 0.88207 1.68583 1.04700 1.10436 1.31625 1.19595 0.90157 1.07826 0.94496 1.20948 0.93233 0.97986 0.96886 1.21270 0.94382 0.99756 0.98488 1.21343 1.01517 0.94853 0.91268 1.20890 0.89967 1.03500 1.01062 1.19765 0.95726 0.97479 0.88648 1.68434 1.02616 1.23966 1.32767 1.19647 0.88838 0.91124 0.87741 1.45019 1.08945 1.71819 1.04533 1.18496 0.93826 0.93492 0.78037 1.21538 0.94272 1.51111 0.92637 0.90579 1.25952 0.98515 0.93841 1.00676 1.70117 1.20501 1.48060 1.17849 0.85280 0.78221 0.79352 0.76818 1.18886 1.20833 1.18758 1.22216 0.98058 0.85375 1.00738 1.21680 0.91492 1.01931 0.99257 0.92819 0.91977 0.91788 0.90932 0.89356 0.91551 0.93103 0.92308 0.83284 0.80964 0.81491 0.85653 0.74522 0.99492 0.99038 0.92265 0.92119 0.93870 0.89402 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.20 71.98 0.66 -1.30 16 2 C -0.09 -1.53 2.79 -10.71 -0.03 -1.56 16 3 C -0.11 -2.06 5.38 30.65 0.16 -1.90 16 4 C 0.07 1.77 4.92 86.33 0.43 2.19 16 5 N -0.48 -14.74 3.77 -700.41 -2.64 -17.39 16 6 C 0.24 8.99 5.60 133.98 0.75 9.74 16 7 N -0.44 -15.51 9.34 -185.11 -1.73 -17.24 16 8 C 0.00 0.15 6.58 40.14 0.26 0.41 16 9 C -0.07 -1.80 9.97 22.33 0.22 -1.58 16 10 C -0.12 -2.31 9.95 22.04 0.22 -2.09 16 11 C -0.07 -1.55 9.95 22.04 0.22 -1.33 16 12 C -0.13 -4.32 9.97 22.33 0.22 -4.10 16 13 C 0.11 4.29 6.58 40.14 0.26 4.56 16 14 N -0.55 -25.89 9.66 -185.11 -1.79 -27.67 16 15 C 0.38 17.12 7.51 133.98 1.01 18.13 16 16 N -0.67 -31.46 5.67 -347.45 -1.97 -33.43 16 17 C 0.28 16.01 5.45 85.63 0.47 16.48 16 18 C -0.56 -31.28 9.28 25.60 0.24 -31.04 16 19 H 0.08 3.96 7.60 -2.91 -0.02 3.94 16 20 C 0.01 0.57 5.46 84.65 0.46 1.03 16 21 N -0.93 -56.14 13.29 21.45 0.28 -55.86 16 22 Si 0.98 43.12 29.54 68.60 2.03 45.14 16 23 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 24 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 25 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 26 C 0.06 1.67 5.40 86.33 0.47 2.13 16 27 C -0.11 -2.15 5.38 30.65 0.16 -1.98 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.05 1.31 7.80 -2.39 -0.02 1.29 16 35 H 0.06 1.66 8.10 -2.38 -0.02 1.64 16 36 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 37 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.17 2.33 8.06 -2.91 -0.02 2.30 16 39 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 40 H 0.42 17.73 7.59 -92.70 -0.70 17.02 16 41 H -0.01 -0.81 8.14 -2.39 -0.02 -0.82 16 42 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 43 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 44 H 0.06 1.82 8.10 -2.39 -0.02 1.80 16 45 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 46 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -71.17 381.26 0.63 -70.53 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 0.26 Total: 28.12 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 6.19 Total: 7.79 kcal Atomic # 7 Polarization: -143.75 SS G_CDS: -7.84 Total: -151.59 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -71.17 0.63 -70.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362687997.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.767 kcal (2) G-P(sol) polarization free energy of solvation -71.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds