Wall clock time and date at job start Tue Mar 31 2020 14:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35908 * 117.00472 * 2 1 4 4 C 1.38861 * 119.97918 * 0.27455 * 3 2 1 5 5 C 1.38230 * 120.22617 * 180.23574 * 4 3 2 6 6 C 1.38020 * 120.20433 * 359.48416 * 5 4 3 7 7 C 1.39539 * 119.96491 * 0.25824 * 6 5 4 8 8 C 1.47821 * 120.11245 * 180.02562 * 7 6 5 9 9 C 1.31476 * 118.65758 * 115.00075 * 8 7 6 10 10 C 1.50177 * 123.05993 * 180.33834 * 9 8 7 11 11 N 1.46835 * 110.24751 * 342.92345 * 10 9 8 12 12 C 1.46901 * 110.99539 * 174.60238 * 11 10 9 13 13 C 1.52999 * 109.46998 * 183.51895 * 12 11 10 14 14 H 1.09004 * 109.47240 * 58.78170 * 13 12 11 15 15 C 1.47208 * 109.47206 * 298.78376 * 13 12 11 16 16 N 8.98992 * 159.24540 * 286.46267 * 2 1 3 17 17 C 1.52994 * 109.47201 * 178.78090 * 13 12 11 18 18 C 1.50701 * 109.47314 * 184.99849 * 17 13 12 19 19 H 1.08003 * 120.00099 * 0.02562 * 18 17 13 20 20 C 1.37875 * 120.00214 * 179.97438 * 18 17 13 21 21 N 1.31520 * 120.00188 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00076 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46598 * 90.00378 * 22 20 18 24 24 H 1.48497 * 109.47118 * 209.99915 * 22 20 18 25 25 H 1.48495 * 109.47098 * 330.00387 * 22 20 18 26 26 C 1.47216 * 110.26507 * 51.17752 * 11 10 9 27 27 C 1.50329 * 118.66202 * 294.73362 * 8 7 6 28 28 C 1.38452 * 119.99238 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47273 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47232 * 300.00421 * 1 2 3 31 31 H 1.09004 * 109.46719 * 60.00352 * 1 2 3 32 32 H 1.07997 * 119.88657 * 359.97438 * 4 3 2 33 33 H 1.07998 * 119.89666 * 179.76325 * 5 4 3 34 34 H 1.07992 * 120.02094 * 180.27906 * 6 5 4 35 35 H 1.08001 * 118.47185 * 0.31783 * 9 8 7 36 36 H 1.09001 * 109.33457 * 103.16344 * 10 9 8 37 37 H 1.08998 * 109.33792 * 222.68430 * 10 9 8 38 38 H 1.08998 * 109.47578 * 303.51754 * 12 11 10 39 39 H 1.09001 * 109.47104 * 63.52494 * 12 11 10 40 40 H 1.08994 * 109.47445 * 304.99941 * 17 13 12 41 41 H 1.09003 * 109.47105 * 65.00507 * 17 13 12 42 42 H 0.96992 * 120.00120 * 180.02562 * 21 20 18 43 43 H 1.09007 * 109.62735 * 50.41656 * 26 11 10 44 44 H 1.08997 * 109.62994 * 170.79927 * 26 11 10 45 45 H 1.08991 * 109.43440 * 283.54141 * 27 8 7 46 46 H 1.08997 * 109.43094 * 43.40453 * 27 8 7 47 47 H 1.08004 * 120.09873 * 0.04355 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2894 2.3753 0.0058 5 6 1.9118 3.6096 0.0009 6 6 3.2895 3.6926 0.0010 7 6 4.0579 2.5278 0.0006 8 6 5.5336 2.6129 0.0012 9 6 6.1907 2.1618 1.0468 10 6 7.6879 2.2060 1.1551 11 7 8.2870 2.4200 -0.1682 12 6 9.7421 2.5938 -0.0654 13 6 10.3181 2.9009 -1.4492 14 1 9.8533 3.8045 -1.8438 15 6 10.0458 1.7732 -2.3554 16 7 9.8355 0.9028 -3.0551 17 6 11.8292 3.1119 -1.3372 18 6 12.3780 3.5345 -2.6757 19 1 11.7151 3.6422 -3.5215 20 6 13.7262 3.7845 -2.8202 21 7 14.5334 3.6539 -1.7902 22 14 14.4065 4.3076 -4.4795 23 1 14.3738 5.7887 -4.5832 24 1 15.8073 3.8330 -4.6121 25 1 13.5791 3.7172 -5.5621 26 6 7.6629 3.5779 -0.8293 27 6 6.2222 3.2062 -1.1962 28 6 3.4287 1.2831 0.0005 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 0.2111 2.3163 0.0098 33 1 1.3181 4.5117 0.0015 34 1 3.7725 4.6584 0.0017 35 1 5.6275 1.7400 1.8662 36 1 7.9779 3.0206 1.8188 37 1 8.0481 1.2629 1.5662 38 1 9.9626 3.4194 0.6113 39 1 10.1910 1.6783 0.3199 40 1 12.0342 3.8874 -0.5993 41 1 12.3041 2.1809 -1.0275 42 1 15.4818 3.8301 -1.8918 43 1 7.6634 4.4311 -0.1508 44 1 8.2196 3.8280 -1.7323 45 1 6.2272 2.4796 -2.0086 46 1 5.6885 4.1016 -1.5146 47 1 4.0183 0.3782 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363128519.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:55 Heat of formation + Delta-G solvation = 26.611332 kcal Electronic energy + Delta-G solvation = -26280.839296 eV Core-core repulsion = 22621.877530 eV Total energy + Delta-G solvation = -3658.961766 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.44820 -39.31761 -37.78453 -36.27809 -34.35053 -33.35460 -31.72566 -31.12990 -30.60291 -29.70360 -27.65557 -26.80496 -24.67700 -23.78655 -22.77494 -22.27865 -21.66988 -21.20177 -18.63861 -17.43276 -16.68617 -16.56604 -16.46003 -16.19878 -16.05216 -15.82292 -14.94145 -14.70216 -14.58089 -14.25209 -14.01666 -13.74208 -13.60759 -13.36647 -12.93136 -12.75002 -12.61136 -12.34907 -12.28685 -12.10918 -12.00313 -11.91251 -11.68638 -11.38559 -11.28021 -11.17873 -11.04520 -11.03095 -10.68291 -10.59035 -10.48064 -10.02573 -9.54179 -9.33291 -9.20783 -8.75582 -8.45841 -8.41885 -8.17014 -6.09632 -4.12769 0.94163 1.20449 2.08300 2.96662 3.29118 3.36282 3.41045 3.50138 3.74812 3.83821 4.01055 4.39565 4.41580 4.49661 4.74508 4.76305 4.76839 4.83708 4.92961 5.02179 5.09167 5.13035 5.16345 5.25987 5.28479 5.35608 5.39244 5.46758 5.49755 5.65500 5.71263 5.73917 5.83507 5.93078 5.99234 6.04912 6.12753 6.14400 6.26904 6.34257 6.39467 6.49493 6.55548 6.78692 7.10248 7.15436 7.21866 7.42318 7.52727 7.85475 8.22887 8.60497 8.91844 9.52690 11.01208 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.025383 B = 0.002096 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.839871 B =13355.937902 C =13419.865272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.126 3.874 4 C -0.213 4.213 5 C -0.080 4.080 6 C -0.145 4.145 7 C -0.004 4.004 8 C -0.084 4.084 9 C -0.135 4.135 10 C 0.085 3.915 11 N -0.536 5.536 12 C 0.061 3.939 13 C 0.006 3.994 14 H 0.102 0.898 15 C 0.254 3.746 16 N -0.476 5.476 17 C 0.032 3.968 18 C -0.526 4.526 19 H 0.057 0.943 20 C 0.062 3.938 21 N -0.891 5.891 22 Si 0.891 3.109 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.042 3.958 27 C -0.071 4.071 28 C -0.140 4.140 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.111 0.889 36 H 0.049 0.951 37 H 0.087 0.913 38 H 0.054 0.946 39 H 0.083 0.917 40 H 0.037 0.963 41 H 0.027 0.973 42 H 0.262 0.738 43 H 0.041 0.959 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.975 0.425 9.192 28.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.081 3.919 4 C -0.232 4.232 5 C -0.098 4.098 6 C -0.163 4.163 7 C -0.004 4.004 8 C -0.084 4.084 9 C -0.154 4.154 10 C -0.043 4.043 11 N -0.260 5.260 12 C -0.068 4.068 13 C -0.016 4.016 14 H 0.119 0.881 15 C -0.063 4.063 16 N -0.152 5.152 17 C -0.007 4.007 18 C -0.564 4.564 19 H 0.075 0.925 20 C -0.140 4.140 21 N -0.530 5.530 22 Si 0.719 3.281 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.198 1.198 26 C -0.085 4.085 27 C -0.108 4.108 28 C -0.159 4.159 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.129 0.871 36 H 0.067 0.933 37 H 0.105 0.895 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.108 0.892 45 H 0.100 0.900 46 H 0.092 0.908 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -27.120 -1.503 7.903 28.289 hybrid contribution 0.365 1.423 -0.110 1.474 sum -26.755 -0.080 7.794 27.868 Atomic orbital electron populations 1.23047 0.78459 1.03932 1.01273 1.86090 1.21322 1.26986 1.88783 1.18929 0.92190 0.84154 0.96594 1.21249 0.99884 0.92440 1.09642 1.20851 0.94532 0.96880 0.97576 1.21161 0.93417 0.97981 1.03784 1.18829 0.92956 0.92063 0.96567 1.19707 0.90419 1.01522 0.96759 1.22526 0.95314 0.99472 0.98045 1.20944 0.91347 1.01556 0.90416 1.62486 1.04299 1.39964 1.19275 1.22272 0.86022 1.01948 0.96510 1.19345 1.01880 0.90985 0.89394 0.88065 1.28816 0.90763 0.93785 0.92964 1.81003 1.11407 1.11823 1.10999 1.19171 0.84766 0.98399 0.98374 1.21130 0.93152 1.46587 0.95516 0.92520 1.24955 0.97074 0.95290 0.96674 1.69936 1.04305 1.48850 1.29889 0.86593 0.78353 0.78821 0.84336 1.20497 1.21155 1.19841 1.22388 0.94631 0.91487 1.00042 1.20476 0.94192 1.00462 0.95690 1.20578 0.91185 0.98133 1.05995 0.88245 0.92706 0.92674 0.85687 0.85743 0.85663 0.87086 0.93275 0.89464 0.92833 0.89867 0.94437 0.95480 0.92802 0.94064 0.89163 0.89977 0.90770 0.85019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.25 10.49 -19.45 -0.20 -3.45 16 3 C 0.13 1.34 6.68 -39.27 -0.26 1.08 16 4 C -0.21 -1.90 9.03 -39.35 -0.36 -2.25 16 5 C -0.08 -0.69 10.03 -39.66 -0.40 -1.08 16 6 C -0.15 -1.40 9.67 -39.18 -0.38 -1.78 16 7 C 0.00 -0.04 5.16 -105.03 -0.54 -0.59 16 8 C -0.08 -0.96 5.30 -102.72 -0.54 -1.50 16 9 C -0.14 -1.50 9.50 -36.40 -0.35 -1.84 16 10 C 0.08 0.97 5.65 -5.26 -0.03 0.94 16 11 N -0.54 -7.31 4.40 -236.02 -1.04 -8.34 16 12 C 0.06 0.90 4.51 -3.82 -0.02 0.88 16 13 C 0.01 0.10 1.78 -93.41 -0.17 -0.06 16 14 H 0.10 1.71 5.99 -51.93 -0.31 1.40 16 15 C 0.25 5.31 13.56 -20.74 -0.28 5.03 16 16 N -0.48 -10.88 18.54 42.17 0.78 -10.10 16 17 C 0.03 0.72 4.42 -27.89 -0.12 0.60 16 18 C -0.53 -13.90 8.60 -34.44 -0.30 -14.20 16 19 H 0.06 1.49 7.59 -52.48 -0.40 1.09 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -25.40 13.29 55.43 0.74 -24.66 16 22 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 26 C 0.04 0.53 5.34 -3.52 -0.02 0.51 16 27 C -0.07 -0.83 6.02 -27.94 -0.17 -1.00 16 28 C -0.14 -1.61 9.62 -39.04 -0.38 -1.98 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.26 7.65 -51.93 -0.40 -0.14 16 31 H 0.05 0.27 7.67 -51.93 -0.40 -0.12 16 32 H 0.13 0.82 6.28 -52.49 -0.33 0.49 16 33 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.11 1.11 7.98 -52.49 -0.42 0.69 16 36 H 0.05 0.52 8.09 -51.93 -0.42 0.10 16 37 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.72 8.10 -51.93 -0.42 0.30 16 39 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 43 H 0.04 0.47 8.08 -51.93 -0.42 0.05 16 44 H 0.09 1.19 5.50 -51.93 -0.29 0.91 16 45 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.07 0.75 8.05 -51.93 -0.42 0.33 16 47 H 0.13 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 390.02 15.07 5.88 5.88 Total: -1.00 -31.52 390.02 -9.43 -40.95 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -7.16 Total: -2.03 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -3.41 Total: -14.48 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 0.48 Total: -43.10 kcal Atomic # 8 Polarization: -3.25 SS G_CDS: -0.20 Total: -3.45 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.52 -9.43 -40.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363128519.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.564 kcal (2) G-P(sol) polarization free energy of solvation -31.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds