Wall clock time and date at job start Tue Mar 31 2020 14:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35908 * 117.00472 * 2 1 4 4 C 1.38861 * 119.97918 * 0.27455 * 3 2 1 5 5 C 1.38230 * 120.22617 * 180.23574 * 4 3 2 6 6 C 1.38020 * 120.20433 * 359.48416 * 5 4 3 7 7 C 1.39539 * 119.96491 * 0.25824 * 6 5 4 8 8 C 1.47821 * 120.11245 * 180.02562 * 7 6 5 9 9 C 1.31476 * 118.65758 * 115.00075 * 8 7 6 10 10 C 1.50177 * 123.05993 * 180.33834 * 9 8 7 11 11 N 1.46835 * 110.24751 * 342.92345 * 10 9 8 12 12 C 1.46901 * 110.99539 * 174.60238 * 11 10 9 13 13 C 1.52999 * 109.46998 * 183.51895 * 12 11 10 14 14 H 1.09004 * 109.47240 * 58.78170 * 13 12 11 15 15 C 1.47208 * 109.47206 * 298.78376 * 13 12 11 16 16 N 8.98992 * 159.24540 * 286.46267 * 2 1 3 17 17 C 1.52994 * 109.47201 * 178.78090 * 13 12 11 18 18 C 1.50701 * 109.47314 * 184.99849 * 17 13 12 19 19 H 1.08003 * 120.00099 * 0.02562 * 18 17 13 20 20 C 1.37875 * 120.00214 * 179.97438 * 18 17 13 21 21 N 1.31520 * 120.00188 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00076 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46598 * 90.00378 * 22 20 18 24 24 H 1.48497 * 109.47118 * 209.99915 * 22 20 18 25 25 H 1.48495 * 109.47098 * 330.00387 * 22 20 18 26 26 C 1.47216 * 110.26507 * 51.17752 * 11 10 9 27 27 C 1.50329 * 118.66202 * 294.73362 * 8 7 6 28 28 C 1.38452 * 119.99238 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47273 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47232 * 300.00421 * 1 2 3 31 31 H 1.09004 * 109.46719 * 60.00352 * 1 2 3 32 32 H 1.07997 * 119.88657 * 359.97438 * 4 3 2 33 33 H 1.07998 * 119.89666 * 179.76325 * 5 4 3 34 34 H 1.07992 * 120.02094 * 180.27906 * 6 5 4 35 35 H 1.08001 * 118.47185 * 0.31783 * 9 8 7 36 36 H 1.09001 * 109.33457 * 103.16344 * 10 9 8 37 37 H 1.08998 * 109.33792 * 222.68430 * 10 9 8 38 38 H 1.08998 * 109.47578 * 303.51754 * 12 11 10 39 39 H 1.09001 * 109.47104 * 63.52494 * 12 11 10 40 40 H 1.08994 * 109.47445 * 304.99941 * 17 13 12 41 41 H 1.09003 * 109.47105 * 65.00507 * 17 13 12 42 42 H 0.96992 * 120.00120 * 180.02562 * 21 20 18 43 43 H 1.09007 * 109.62735 * 50.41656 * 26 11 10 44 44 H 1.08997 * 109.62994 * 170.79927 * 26 11 10 45 45 H 1.08991 * 109.43440 * 283.54141 * 27 8 7 46 46 H 1.08997 * 109.43094 * 43.40453 * 27 8 7 47 47 H 1.08004 * 120.09873 * 0.04355 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2894 2.3753 0.0058 5 6 1.9118 3.6096 0.0009 6 6 3.2895 3.6926 0.0010 7 6 4.0579 2.5278 0.0006 8 6 5.5336 2.6129 0.0012 9 6 6.1907 2.1618 1.0468 10 6 7.6879 2.2060 1.1551 11 7 8.2870 2.4200 -0.1682 12 6 9.7421 2.5938 -0.0654 13 6 10.3181 2.9009 -1.4492 14 1 9.8533 3.8045 -1.8438 15 6 10.0458 1.7732 -2.3554 16 7 9.8355 0.9028 -3.0551 17 6 11.8292 3.1119 -1.3372 18 6 12.3780 3.5345 -2.6757 19 1 11.7151 3.6422 -3.5215 20 6 13.7262 3.7845 -2.8202 21 7 14.5334 3.6539 -1.7902 22 14 14.4065 4.3076 -4.4795 23 1 14.3738 5.7887 -4.5832 24 1 15.8073 3.8330 -4.6121 25 1 13.5791 3.7172 -5.5621 26 6 7.6629 3.5779 -0.8293 27 6 6.2222 3.2062 -1.1962 28 6 3.4287 1.2831 0.0005 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 0.2111 2.3163 0.0098 33 1 1.3181 4.5117 0.0015 34 1 3.7725 4.6584 0.0017 35 1 5.6275 1.7400 1.8662 36 1 7.9779 3.0206 1.8188 37 1 8.0481 1.2629 1.5662 38 1 9.9626 3.4194 0.6113 39 1 10.1910 1.6783 0.3199 40 1 12.0342 3.8874 -0.5993 41 1 12.3041 2.1809 -1.0275 42 1 15.4818 3.8301 -1.8918 43 1 7.6634 4.4311 -0.1508 44 1 8.2196 3.8280 -1.7323 45 1 6.2272 2.4796 -2.0086 46 1 5.6885 4.1016 -1.5146 47 1 4.0183 0.3782 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363128519.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:54 Heat of formation + Delta-G solvation = 9.883633 kcal Electronic energy + Delta-G solvation = -26281.564664 eV Core-core repulsion = 22621.877530 eV Total energy + Delta-G solvation = -3659.687133 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.16880 -40.29354 -38.67425 -37.66178 -35.77830 -34.98190 -33.23169 -31.97460 -31.45600 -30.64956 -28.52061 -28.03636 -25.94507 -24.74320 -23.88481 -23.47447 -22.90354 -22.15097 -19.37761 -18.59300 -18.29046 -18.08184 -17.13823 -16.97378 -16.89194 -16.65915 -16.49557 -15.91141 -15.71688 -15.26570 -14.98185 -14.76997 -14.46772 -14.39895 -14.31743 -14.12820 -13.74638 -13.60560 -13.40551 -13.29755 -13.12869 -12.99986 -12.91283 -12.69122 -12.60319 -12.51546 -12.35096 -12.17086 -12.00040 -11.94205 -11.64299 -11.45019 -11.31799 -10.99939 -10.53427 -10.11577 -9.57803 -9.22031 -9.09099 -8.18451 -6.26401 0.20445 0.48038 1.24455 1.40523 1.42893 1.51912 2.07121 2.14877 2.37177 2.42143 2.77651 2.94435 3.17039 3.36567 3.60652 3.87891 3.90198 4.05468 4.13420 4.25120 4.29076 4.33188 4.37407 4.38221 4.41871 4.48965 4.52776 4.64117 4.66273 4.69383 4.71935 4.74723 4.83298 4.90545 5.00454 5.04292 5.11504 5.20039 5.28242 5.41407 5.47812 5.50987 5.58830 5.62859 5.79070 5.80643 5.93781 6.13513 6.17008 6.25959 6.44858 6.84240 6.94456 7.41970 8.92329 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.025383 B = 0.002096 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.839871 B =13355.937902 C =13419.865272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.343 6.343 3 C 0.114 3.886 4 C -0.213 4.213 5 C -0.078 4.078 6 C -0.151 4.151 7 C -0.015 4.015 8 C -0.090 4.090 9 C -0.137 4.137 10 C 0.085 3.915 11 N -0.552 5.552 12 C 0.071 3.929 13 C 0.016 3.984 14 H 0.121 0.879 15 C 0.265 3.735 16 N -0.513 5.513 17 C 0.038 3.962 18 C -0.538 4.538 19 H 0.053 0.947 20 C 0.011 3.989 21 N -0.922 5.922 22 Si 0.948 3.052 23 H -0.266 1.266 24 H -0.285 1.285 25 H -0.277 1.277 26 C 0.042 3.958 27 C -0.067 4.067 28 C -0.164 4.164 29 H 0.115 0.885 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.150 0.850 33 H 0.154 0.846 34 H 0.139 0.861 35 H 0.120 0.880 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.001 0.999 42 H 0.264 0.736 43 H 0.058 0.942 44 H 0.080 0.920 45 H 0.060 0.940 46 H 0.091 0.909 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.925 2.012 9.628 30.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.257 6.257 3 C 0.069 3.931 4 C -0.231 4.231 5 C -0.096 4.096 6 C -0.169 4.169 7 C -0.015 4.015 8 C -0.090 4.090 9 C -0.155 4.155 10 C -0.042 4.042 11 N -0.277 5.277 12 C -0.057 4.057 13 C -0.005 4.005 14 H 0.138 0.862 15 C -0.051 4.051 16 N -0.191 5.191 17 C 0.000 4.000 18 C -0.576 4.576 19 H 0.071 0.929 20 C -0.188 4.188 21 N -0.562 5.562 22 Si 0.774 3.226 23 H -0.191 1.191 24 H -0.211 1.211 25 H -0.202 1.202 26 C -0.085 4.085 27 C -0.105 4.105 28 C -0.183 4.183 29 H 0.133 0.867 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.167 0.833 33 H 0.172 0.828 34 H 0.157 0.843 35 H 0.138 0.862 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.056 0.944 41 H 0.020 0.980 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.098 0.902 45 H 0.078 0.922 46 H 0.110 0.890 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -29.090 0.087 8.343 30.262 hybrid contribution 0.885 0.894 -0.235 1.279 sum -28.205 0.981 8.108 29.364 Atomic orbital electron populations 1.23336 0.76361 1.05476 1.02358 1.86057 1.23614 1.27185 1.88821 1.19091 0.92134 0.85034 0.96865 1.21558 1.01118 0.91890 1.08547 1.21226 0.94381 0.97866 0.96082 1.21389 0.94057 0.97974 1.03520 1.18861 0.92793 0.92444 0.97421 1.19753 0.90917 1.01701 0.96620 1.22611 0.95176 0.99308 0.98418 1.20993 0.91370 1.02335 0.89462 1.62438 1.03547 1.40854 1.20877 1.22099 0.86878 1.02557 0.94187 1.19330 0.99156 0.90865 0.91174 0.86190 1.29350 0.89757 0.93630 0.92394 1.80999 1.12568 1.13148 1.12361 1.18989 0.87540 0.96832 0.96684 1.21534 0.93354 1.45857 0.96839 0.92854 1.25707 0.97678 0.95678 0.99729 1.70029 1.04546 1.50064 1.31572 0.85698 0.77425 0.79077 0.80393 1.19069 1.21090 1.20210 1.22406 0.94664 0.91643 0.99835 1.20427 0.94154 1.00647 0.95226 1.20599 0.91955 0.97955 1.07741 0.86661 0.91402 0.91672 0.83256 0.82825 0.84300 0.86231 0.91688 0.89149 0.90782 0.90294 0.94444 0.98034 0.92737 0.92424 0.90158 0.92165 0.89047 0.86544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.34 -6.87 10.49 -92.52 -0.97 -7.84 16 3 C 0.11 2.37 6.68 22.47 0.15 2.52 16 4 C -0.21 -3.34 9.03 22.42 0.20 -3.14 16 5 C -0.08 -1.13 10.03 22.22 0.22 -0.90 16 6 C -0.15 -2.63 9.67 22.53 0.22 -2.41 16 7 C -0.02 -0.32 5.16 -20.13 -0.10 -0.43 16 8 C -0.09 -1.98 5.30 -17.94 -0.10 -2.08 16 9 C -0.14 -2.90 9.50 25.03 0.24 -2.66 16 10 C 0.09 1.81 5.65 85.41 0.48 2.30 16 11 N -0.55 -14.40 4.40 -900.62 -3.96 -18.36 16 12 C 0.07 2.01 4.51 86.30 0.39 2.40 16 13 C 0.02 0.58 1.78 -12.60 -0.02 0.56 16 14 H 0.12 3.90 5.99 -2.39 -0.01 3.88 16 15 C 0.26 11.11 13.56 89.44 1.21 12.32 16 16 N -0.51 -23.74 18.54 20.01 0.37 -23.37 16 17 C 0.04 1.76 4.42 29.85 0.13 1.89 16 18 C -0.54 -28.39 8.60 25.60 0.22 -28.17 16 19 H 0.05 2.79 7.59 -2.91 -0.02 2.77 16 20 C 0.01 0.60 5.46 84.65 0.46 1.07 16 21 N -0.92 -52.77 13.29 21.45 0.28 -52.48 16 22 Si 0.95 43.46 29.54 68.60 2.03 45.48 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 25 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 26 C 0.04 0.98 5.34 86.32 0.46 1.45 16 27 C -0.07 -1.52 6.02 29.81 0.18 -1.34 16 28 C -0.16 -3.82 9.62 22.62 0.22 -3.60 16 29 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.50 7.65 -2.39 -0.02 0.48 16 31 H 0.06 0.52 7.67 -2.38 -0.02 0.50 16 32 H 0.15 1.51 6.28 -2.91 -0.02 1.49 16 33 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 34 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 35 H 0.12 2.30 7.98 -2.91 -0.02 2.27 16 36 H 0.07 1.20 8.09 -2.39 -0.02 1.18 16 37 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.07 1.81 8.10 -2.39 -0.02 1.79 16 39 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 42 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 43 H 0.06 1.17 8.08 -2.38 -0.02 1.15 16 44 H 0.08 2.02 5.50 -2.39 -0.01 2.01 16 45 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.09 1.70 8.05 -2.39 -0.02 1.68 16 47 H 0.12 2.92 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -67.92 390.02 4.38 -63.54 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 0.96 Total: 11.97 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: 5.68 Total: -18.93 kcal Atomic # 7 Polarization: -90.91 SS G_CDS: -3.31 Total: -94.22 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.97 Total: -7.84 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -67.92 4.38 -63.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363128519.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.419 kcal (2) G-P(sol) polarization free energy of solvation -67.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds