Wall clock time and date at job start Tue Mar 31 2020 14:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35914 * 116.99992 * 2 1 4 4 C 1.38854 * 119.98493 * 0.26665 * 3 2 1 5 5 C 1.38225 * 120.23104 * 180.23952 * 4 3 2 6 6 C 1.38030 * 120.20024 * 359.49111 * 5 4 3 7 7 C 1.39539 * 119.96716 * 0.25161 * 6 5 4 8 8 C 1.47819 * 120.11542 * 180.02562 * 7 6 5 9 9 C 1.31472 * 118.65838 * 114.99950 * 8 7 6 10 10 C 1.50172 * 123.05846 * 180.33874 * 9 8 7 11 11 N 1.46830 * 110.24983 * 342.92480 * 10 9 8 12 12 C 1.46903 * 110.99857 * 174.60218 * 11 10 9 13 13 C 1.53000 * 109.46874 * 65.96167 * 12 11 10 14 14 H 1.09003 * 109.47269 * 304.28692 * 13 12 11 15 15 C 1.47205 * 109.47372 * 64.28359 * 13 12 11 16 16 N 8.70266 * 170.18046 * 247.23201 * 2 1 3 17 17 C 1.52995 * 109.47084 * 184.28483 * 13 12 11 18 18 C 1.50700 * 109.47206 * 175.00117 * 17 13 12 19 19 H 1.07997 * 119.99829 * 359.97438 * 18 17 13 20 20 C 1.37877 * 120.00284 * 180.02562 * 18 17 13 21 21 N 1.31521 * 119.99784 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00162 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47147 * 89.99618 * 22 20 18 24 24 H 1.48506 * 109.47146 * 209.99433 * 22 20 18 25 25 H 1.48497 * 109.47182 * 329.99513 * 22 20 18 26 26 C 1.47218 * 110.26385 * 51.17765 * 11 10 9 27 27 C 1.50329 * 118.65867 * 294.73663 * 8 7 6 28 28 C 1.38453 * 119.98639 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47375 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47244 * 300.01214 * 1 2 3 31 31 H 1.09001 * 109.46644 * 60.00228 * 1 2 3 32 32 H 1.08003 * 119.88762 * 0.02562 * 4 3 2 33 33 H 1.07996 * 119.90554 * 179.76539 * 5 4 3 34 34 H 1.07995 * 120.01741 * 180.27966 * 6 5 4 35 35 H 1.07999 * 118.47173 * 0.32056 * 9 8 7 36 36 H 1.08999 * 109.33901 * 103.16578 * 10 9 8 37 37 H 1.08999 * 109.34039 * 222.68774 * 10 9 8 38 38 H 1.09005 * 109.47213 * 185.95777 * 12 11 10 39 39 H 1.08999 * 109.47317 * 305.96065 * 12 11 10 40 40 H 1.09001 * 109.47490 * 294.99783 * 17 13 12 41 41 H 1.08997 * 109.47064 * 54.99850 * 17 13 12 42 42 H 0.96998 * 119.99448 * 180.02562 * 21 20 18 43 43 H 1.09003 * 109.63037 * 50.42320 * 26 11 10 44 44 H 1.08998 * 109.63203 * 170.99259 * 26 11 10 45 45 H 1.08997 * 109.43852 * 283.54138 * 27 8 7 46 46 H 1.09005 * 109.43342 * 43.39947 * 27 8 7 47 47 H 1.08001 * 120.10034 * 0.03074 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2895 2.3753 0.0056 5 6 1.9117 3.6096 0.0006 6 6 3.2895 3.6926 0.0007 7 6 4.0579 2.5279 0.0004 8 6 5.5336 2.6130 0.0010 9 6 6.1908 2.1620 1.0467 10 6 7.6879 2.2063 1.1548 11 7 8.2870 2.4201 -0.1685 12 6 9.7421 2.5939 -0.0659 13 6 10.3786 1.2892 0.4174 14 1 9.9194 0.9878 1.3589 15 6 10.1673 0.2373 -0.5905 16 7 10.0042 -0.5744 -1.3685 17 6 11.8793 1.5009 0.6267 18 6 12.4848 0.2542 1.2185 19 1 11.8614 -0.6032 1.4251 20 6 13.8343 0.2085 1.4972 21 7 14.5934 1.2528 1.2460 22 14 14.5846 -1.3366 2.2314 23 1 15.0326 -2.2368 1.1386 24 1 15.7482 -0.9680 3.0774 25 1 13.5697 -2.0332 3.0619 26 6 7.6628 3.5779 -0.8297 27 6 6.2221 3.2061 -1.1965 28 6 3.4287 1.2831 -0.0005 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.2111 2.3164 0.0104 33 1 1.3181 4.5118 0.0012 34 1 3.7725 4.6585 0.0013 35 1 5.6276 1.7404 1.8661 36 1 7.9780 3.0210 1.8183 37 1 8.0482 1.2633 1.5660 38 1 10.1467 2.8552 -1.0437 39 1 9.9636 3.3910 0.6438 40 1 12.3532 1.7153 -0.3313 41 1 12.0369 2.3389 1.3056 42 1 15.5428 1.2204 1.4418 43 1 7.6634 4.4312 -0.1515 44 1 8.2175 3.8258 -1.7347 45 1 6.2271 2.4794 -2.0089 46 1 5.6884 4.1015 -1.5151 47 1 4.0183 0.3783 -0.0015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363128520.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:58 Heat of formation + Delta-G solvation = 23.186017 kcal Electronic energy + Delta-G solvation = -26245.465056 eV Core-core repulsion = 22586.354757 eV Total energy + Delta-G solvation = -3659.110299 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.43932 -39.27347 -37.75222 -36.28579 -34.34312 -33.35275 -31.78995 -30.93287 -30.72204 -29.70781 -27.64486 -26.79196 -24.85665 -23.52294 -22.67847 -22.33808 -21.63625 -21.33032 -18.63684 -17.50951 -16.63131 -16.55268 -16.40095 -16.18776 -16.03875 -15.82702 -15.04630 -14.69612 -14.45272 -14.27124 -14.00045 -13.68095 -13.58461 -13.28941 -12.93201 -12.86069 -12.60720 -12.33875 -12.29398 -12.26014 -11.97230 -11.90267 -11.55846 -11.37329 -11.31809 -11.19719 -11.06201 -11.00555 -10.64242 -10.60801 -10.45674 -10.11891 -9.51912 -9.32897 -9.20924 -8.75192 -8.44796 -8.42136 -8.17133 -6.08735 -4.11628 0.94697 1.20651 2.09917 2.97978 3.30887 3.37412 3.40774 3.50320 3.76936 3.87040 3.99919 4.40107 4.42455 4.49987 4.74764 4.76683 4.77798 4.81545 4.93318 5.01462 5.10393 5.13013 5.18942 5.26719 5.29497 5.32759 5.35495 5.46740 5.53914 5.66615 5.68506 5.74680 5.85877 5.93137 5.99564 6.01514 6.07633 6.13731 6.28285 6.33365 6.40000 6.48516 6.56882 6.80427 7.11284 7.13848 7.22077 7.43491 7.54025 7.86730 8.24376 8.63140 8.93143 9.53775 11.02138 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.020176 B = 0.002212 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.442465 B =12657.821192 C =13411.586580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.127 3.873 4 C -0.214 4.214 5 C -0.081 4.081 6 C -0.146 4.146 7 C -0.003 4.003 8 C -0.091 4.091 9 C -0.129 4.129 10 C 0.078 3.922 11 N -0.536 5.536 12 C 0.061 3.939 13 C 0.010 3.990 14 H 0.099 0.901 15 C 0.256 3.744 16 N -0.479 5.479 17 C 0.031 3.969 18 C -0.525 4.525 19 H 0.057 0.943 20 C 0.062 3.938 21 N -0.892 5.892 22 Si 0.891 3.109 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 C 0.053 3.947 27 C -0.069 4.069 28 C -0.140 4.140 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.112 0.888 36 H 0.053 0.947 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.055 0.945 40 H 0.026 0.974 41 H 0.037 0.963 42 H 0.262 0.738 43 H 0.039 0.961 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.385 8.481 -0.651 28.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.082 3.918 4 C -0.232 4.232 5 C -0.099 4.099 6 C -0.164 4.164 7 C -0.003 4.003 8 C -0.091 4.091 9 C -0.147 4.147 10 C -0.049 4.049 11 N -0.261 5.261 12 C -0.067 4.067 13 C -0.012 4.012 14 H 0.117 0.883 15 C -0.061 4.061 16 N -0.156 5.156 17 C -0.007 4.007 18 C -0.563 4.563 19 H 0.075 0.925 20 C -0.140 4.140 21 N -0.530 5.530 22 Si 0.719 3.281 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.197 1.197 26 C -0.075 4.075 27 C -0.107 4.107 28 C -0.159 4.159 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.130 0.870 36 H 0.071 0.929 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.044 0.956 41 H 0.055 0.945 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.098 0.902 45 H 0.100 0.900 46 H 0.091 0.909 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -27.466 6.701 -2.099 28.349 hybrid contribution 0.381 0.234 1.247 1.325 sum -27.085 6.934 -0.852 27.972 Atomic orbital electron populations 1.23047 0.78465 1.03950 1.01245 1.86102 1.21315 1.26961 1.88748 1.18936 0.92200 0.84163 0.96513 1.21244 0.99880 0.92438 1.09681 1.20842 0.94528 0.96854 0.97659 1.21147 0.93402 0.97923 1.03963 1.18817 0.92941 0.92023 0.96518 1.19648 0.90419 1.02212 0.96828 1.22583 0.95421 0.98707 0.97988 1.21068 0.91153 1.02245 0.90440 1.62445 1.04342 1.39619 1.19677 1.22289 0.85710 0.96610 1.02112 1.19237 1.01536 0.87517 0.92895 0.88295 1.28831 0.90546 0.93383 0.93341 1.80987 1.11527 1.11406 1.11660 1.19172 0.85041 0.98255 0.98266 1.21137 0.93560 0.99521 1.42096 0.92511 1.24956 0.97254 0.96252 0.95554 1.69941 1.05864 1.29221 1.48017 0.86593 0.78885 0.83385 0.79220 1.20641 1.21129 1.19748 1.22198 0.94694 0.91468 0.99117 1.20459 0.94090 1.00332 0.95794 1.20607 0.91207 0.98208 1.05873 0.88233 0.92703 0.92697 0.85698 0.85788 0.85751 0.86981 0.92911 0.88800 0.90024 0.92717 0.95558 0.94462 0.92825 0.94256 0.90219 0.90043 0.90923 0.84961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.32 10.49 -19.47 -0.20 -3.53 16 3 C 0.13 1.37 6.68 -39.27 -0.26 1.10 16 4 C -0.21 -1.89 9.03 -39.36 -0.36 -2.25 16 5 C -0.08 -0.68 10.03 -39.66 -0.40 -1.08 16 6 C -0.15 -1.37 9.67 -39.17 -0.38 -1.75 16 7 C 0.00 -0.03 5.16 -105.03 -0.54 -0.57 16 8 C -0.09 -1.02 5.30 -102.72 -0.54 -1.57 16 9 C -0.13 -1.49 9.50 -36.40 -0.35 -1.83 16 10 C 0.08 0.96 5.27 -5.27 -0.03 0.93 16 11 N -0.54 -7.24 4.39 -236.02 -1.04 -8.28 16 12 C 0.06 0.90 4.32 -3.82 -0.02 0.88 16 13 C 0.01 0.19 2.12 -93.41 -0.20 -0.01 16 14 H 0.10 1.71 6.47 -51.93 -0.34 1.37 16 15 C 0.26 5.41 13.65 -20.75 -0.28 5.13 16 16 N -0.48 -11.05 18.54 42.16 0.78 -10.27 16 17 C 0.03 0.72 4.42 -27.89 -0.12 0.60 16 18 C -0.52 -13.96 8.60 -34.44 -0.30 -14.26 16 19 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 22 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 25 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 26 C 0.05 0.59 5.59 -3.52 -0.02 0.57 16 27 C -0.07 -0.74 6.02 -27.94 -0.17 -0.91 16 28 C -0.14 -1.63 9.62 -39.04 -0.38 -2.01 16 29 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.27 7.64 -51.93 -0.40 -0.13 16 31 H 0.05 0.27 7.67 -51.93 -0.40 -0.12 16 32 H 0.13 0.82 6.28 -52.48 -0.33 0.49 16 33 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 35 H 0.11 1.21 7.98 -52.49 -0.42 0.79 16 36 H 0.05 0.60 8.06 -51.93 -0.42 0.18 16 37 H 0.09 1.21 6.62 -51.93 -0.34 0.86 16 38 H 0.08 1.20 7.93 -51.93 -0.41 0.79 16 39 H 0.05 0.73 8.06 -51.93 -0.42 0.31 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.04 0.41 8.08 -51.93 -0.42 -0.01 16 44 H 0.08 0.85 7.91 -51.93 -0.41 0.44 16 45 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.07 0.64 8.05 -51.93 -0.42 0.23 16 47 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 391.20 15.07 5.90 5.90 Total: -1.00 -31.71 391.20 -9.50 -41.21 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -7.21 Total: -2.38 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -3.44 Total: -14.25 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.48 Total: -43.29 kcal Atomic # 8 Polarization: -3.32 SS G_CDS: -0.20 Total: -3.53 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.71 -9.50 -41.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363128520.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.395 kcal (2) G-P(sol) polarization free energy of solvation -31.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds