Wall clock time and date at job start Tue Mar 31 2020 14:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35914 * 116.99992 * 2 1 4 4 C 1.38854 * 119.98493 * 0.26665 * 3 2 1 5 5 C 1.38225 * 120.23104 * 180.23952 * 4 3 2 6 6 C 1.38030 * 120.20024 * 359.49111 * 5 4 3 7 7 C 1.39539 * 119.96716 * 0.25161 * 6 5 4 8 8 C 1.47819 * 120.11542 * 180.02562 * 7 6 5 9 9 C 1.31472 * 118.65838 * 114.99950 * 8 7 6 10 10 C 1.50172 * 123.05846 * 180.33874 * 9 8 7 11 11 N 1.46830 * 110.24983 * 342.92480 * 10 9 8 12 12 C 1.46903 * 110.99857 * 174.60218 * 11 10 9 13 13 C 1.53000 * 109.46874 * 65.96167 * 12 11 10 14 14 H 1.09003 * 109.47269 * 304.28692 * 13 12 11 15 15 C 1.47205 * 109.47372 * 64.28359 * 13 12 11 16 16 N 8.70266 * 170.18046 * 247.23201 * 2 1 3 17 17 C 1.52995 * 109.47084 * 184.28483 * 13 12 11 18 18 C 1.50700 * 109.47206 * 175.00117 * 17 13 12 19 19 H 1.07997 * 119.99829 * 359.97438 * 18 17 13 20 20 C 1.37877 * 120.00284 * 180.02562 * 18 17 13 21 21 N 1.31521 * 119.99784 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00162 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47147 * 89.99618 * 22 20 18 24 24 H 1.48506 * 109.47146 * 209.99433 * 22 20 18 25 25 H 1.48497 * 109.47182 * 329.99513 * 22 20 18 26 26 C 1.47218 * 110.26385 * 51.17765 * 11 10 9 27 27 C 1.50329 * 118.65867 * 294.73663 * 8 7 6 28 28 C 1.38453 * 119.98639 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47375 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47244 * 300.01214 * 1 2 3 31 31 H 1.09001 * 109.46644 * 60.00228 * 1 2 3 32 32 H 1.08003 * 119.88762 * 0.02562 * 4 3 2 33 33 H 1.07996 * 119.90554 * 179.76539 * 5 4 3 34 34 H 1.07995 * 120.01741 * 180.27966 * 6 5 4 35 35 H 1.07999 * 118.47173 * 0.32056 * 9 8 7 36 36 H 1.08999 * 109.33901 * 103.16578 * 10 9 8 37 37 H 1.08999 * 109.34039 * 222.68774 * 10 9 8 38 38 H 1.09005 * 109.47213 * 185.95777 * 12 11 10 39 39 H 1.08999 * 109.47317 * 305.96065 * 12 11 10 40 40 H 1.09001 * 109.47490 * 294.99783 * 17 13 12 41 41 H 1.08997 * 109.47064 * 54.99850 * 17 13 12 42 42 H 0.96998 * 119.99448 * 180.02562 * 21 20 18 43 43 H 1.09003 * 109.63037 * 50.42320 * 26 11 10 44 44 H 1.08998 * 109.63203 * 170.99259 * 26 11 10 45 45 H 1.08997 * 109.43852 * 283.54138 * 27 8 7 46 46 H 1.09005 * 109.43342 * 43.39947 * 27 8 7 47 47 H 1.08001 * 120.10034 * 0.03074 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2895 2.3753 0.0056 5 6 1.9117 3.6096 0.0006 6 6 3.2895 3.6926 0.0007 7 6 4.0579 2.5279 0.0004 8 6 5.5336 2.6130 0.0010 9 6 6.1908 2.1620 1.0467 10 6 7.6879 2.2063 1.1548 11 7 8.2870 2.4201 -0.1685 12 6 9.7421 2.5939 -0.0659 13 6 10.3786 1.2892 0.4174 14 1 9.9194 0.9878 1.3589 15 6 10.1673 0.2373 -0.5905 16 7 10.0042 -0.5744 -1.3685 17 6 11.8793 1.5009 0.6267 18 6 12.4848 0.2542 1.2185 19 1 11.8614 -0.6032 1.4251 20 6 13.8343 0.2085 1.4972 21 7 14.5934 1.2528 1.2460 22 14 14.5846 -1.3366 2.2314 23 1 15.0326 -2.2368 1.1386 24 1 15.7482 -0.9680 3.0774 25 1 13.5697 -2.0332 3.0619 26 6 7.6628 3.5779 -0.8297 27 6 6.2221 3.2061 -1.1965 28 6 3.4287 1.2831 -0.0005 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.2111 2.3164 0.0104 33 1 1.3181 4.5118 0.0012 34 1 3.7725 4.6585 0.0013 35 1 5.6276 1.7404 1.8661 36 1 7.9780 3.0210 1.8183 37 1 8.0482 1.2633 1.5660 38 1 10.1467 2.8552 -1.0437 39 1 9.9636 3.3910 0.6438 40 1 12.3532 1.7153 -0.3313 41 1 12.0369 2.3389 1.3056 42 1 15.5428 1.2204 1.4418 43 1 7.6634 4.4312 -0.1515 44 1 8.2175 3.8258 -1.7347 45 1 6.2271 2.4794 -2.0089 46 1 5.6884 4.1015 -1.5151 47 1 4.0183 0.3783 -0.0015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363128520.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:58 Heat of formation + Delta-G solvation = 6.294694 kcal Electronic energy + Delta-G solvation = -26246.197519 eV Core-core repulsion = 22586.354757 eV Total energy + Delta-G solvation = -3659.842762 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.16162 -40.22727 -38.65156 -37.69300 -35.77337 -34.97776 -33.26580 -31.84518 -31.52884 -30.64782 -28.49415 -28.06368 -26.06525 -24.53485 -23.83721 -23.23218 -23.18862 -22.17718 -19.38603 -18.64291 -18.35889 -17.93499 -17.12220 -16.99075 -16.88365 -16.65354 -16.48286 -15.94551 -15.71541 -15.21204 -14.92088 -14.74129 -14.47101 -14.39343 -14.30441 -14.14084 -13.75302 -13.65046 -13.42898 -13.22128 -13.11802 -13.03375 -12.93440 -12.67387 -12.59826 -12.45497 -12.41284 -12.19053 -12.00066 -11.86674 -11.63073 -11.50394 -11.29557 -11.04168 -10.54493 -10.11318 -9.58233 -9.22456 -9.08595 -8.18691 -6.26390 0.20624 0.48213 1.24825 1.40031 1.42495 1.51435 2.08190 2.16015 2.37504 2.41975 2.77871 2.94848 3.16788 3.37256 3.61059 3.88042 3.91539 4.09361 4.16973 4.26380 4.30049 4.33075 4.34826 4.37814 4.42767 4.52143 4.54760 4.63832 4.67548 4.69921 4.71534 4.77436 4.84300 4.93241 4.96860 5.02074 5.11988 5.20553 5.28510 5.41717 5.48105 5.51443 5.58978 5.63606 5.79088 5.81165 5.95064 6.13313 6.19254 6.25797 6.45088 6.84404 6.95158 7.41820 8.92071 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.020176 B = 0.002212 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.442465 B =12657.821192 C =13411.586580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.344 6.344 3 C 0.113 3.887 4 C -0.213 4.213 5 C -0.077 4.077 6 C -0.150 4.150 7 C -0.015 4.015 8 C -0.089 4.089 9 C -0.139 4.139 10 C 0.078 3.922 11 N -0.553 5.553 12 C 0.072 3.928 13 C 0.020 3.980 14 H 0.115 0.885 15 C 0.267 3.733 16 N -0.516 5.516 17 C 0.039 3.961 18 C -0.538 4.538 19 H 0.052 0.948 20 C 0.011 3.989 21 N -0.922 5.922 22 Si 0.947 3.053 23 H -0.285 1.285 24 H -0.278 1.278 25 H -0.265 1.265 26 C 0.054 3.946 27 C -0.067 4.067 28 C -0.166 4.166 29 H 0.114 0.886 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.150 0.850 33 H 0.155 0.845 34 H 0.142 0.858 35 H 0.114 0.886 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.002 0.998 41 H 0.037 0.963 42 H 0.264 0.736 43 H 0.054 0.946 44 H 0.084 0.916 45 H 0.066 0.934 46 H 0.095 0.905 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.378 9.907 -0.095 31.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.258 6.258 3 C 0.068 3.932 4 C -0.231 4.231 5 C -0.095 4.095 6 C -0.168 4.168 7 C -0.015 4.015 8 C -0.090 4.090 9 C -0.158 4.158 10 C -0.048 4.048 11 N -0.278 5.278 12 C -0.056 4.056 13 C -0.002 4.002 14 H 0.132 0.868 15 C -0.050 4.050 16 N -0.194 5.194 17 C 0.000 4.000 18 C -0.576 4.576 19 H 0.070 0.930 20 C -0.188 4.188 21 N -0.562 5.562 22 Si 0.773 3.227 23 H -0.211 1.211 24 H -0.203 1.203 25 H -0.189 1.189 26 C -0.073 4.073 27 C -0.104 4.104 28 C -0.185 4.185 29 H 0.132 0.868 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.167 0.833 33 H 0.173 0.827 34 H 0.159 0.841 35 H 0.132 0.868 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.021 0.979 41 H 0.056 0.944 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.103 0.897 45 H 0.084 0.916 46 H 0.113 0.887 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -29.480 8.125 -1.538 30.618 hybrid contribution 0.902 -0.220 1.053 1.404 sum -28.578 7.905 -0.485 29.655 Atomic orbital electron populations 1.23334 0.76349 1.05441 1.02389 1.86065 1.23641 1.27278 1.88829 1.19099 0.92114 0.85063 0.96895 1.21557 1.01108 0.91883 1.08549 1.21238 0.94416 0.97816 0.96018 1.21390 0.93995 0.97926 1.03447 1.18864 0.92822 0.92390 0.97393 1.19787 0.90898 1.01609 0.96676 1.22588 0.95096 0.99473 0.98607 1.21062 0.91479 1.02221 0.90087 1.62372 1.03562 1.41243 1.20619 1.22107 0.86548 0.94569 1.02410 1.19217 0.99039 0.88789 0.93118 0.86772 1.29376 0.89526 0.93058 0.92990 1.80982 1.12673 1.12697 1.13039 1.18990 0.87650 0.96816 0.96562 1.21540 0.93838 1.00571 1.41643 0.92986 1.25697 0.97972 0.98860 0.96233 1.70028 1.06129 1.30826 1.49197 0.85721 0.78422 0.80132 0.78470 1.21095 1.20277 1.18947 1.22261 0.94655 0.90998 0.99408 1.20463 0.94098 1.00826 0.95022 1.20608 0.92001 0.98000 1.07869 0.86763 0.91450 0.91520 0.83255 0.82694 0.84062 0.86765 0.91553 0.89864 0.90139 0.90785 0.97947 0.94445 0.92724 0.92735 0.89713 0.91596 0.88687 0.86894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.34 -7.15 10.49 -92.58 -0.97 -8.12 16 3 C 0.11 2.40 6.68 22.47 0.15 2.55 16 4 C -0.21 -3.32 9.03 22.41 0.20 -3.11 16 5 C -0.08 -1.07 10.03 22.22 0.22 -0.85 16 6 C -0.15 -2.48 9.67 22.53 0.22 -2.26 16 7 C -0.01 -0.31 5.16 -20.13 -0.10 -0.41 16 8 C -0.09 -1.95 5.30 -17.94 -0.10 -2.05 16 9 C -0.14 -3.15 9.50 25.03 0.24 -2.92 16 10 C 0.08 1.84 5.27 85.40 0.45 2.29 16 11 N -0.55 -14.28 4.39 -900.63 -3.95 -18.24 16 12 C 0.07 2.03 4.32 86.30 0.37 2.41 16 13 C 0.02 0.73 2.12 -12.60 -0.03 0.71 16 14 H 0.11 3.84 6.47 -2.39 -0.02 3.82 16 15 C 0.27 11.31 13.65 89.44 1.22 12.53 16 16 N -0.52 -24.09 18.54 20.01 0.37 -23.72 16 17 C 0.04 1.78 4.42 29.85 0.13 1.91 16 18 C -0.54 -28.64 8.60 25.60 0.22 -28.42 16 19 H 0.05 2.76 7.59 -2.91 -0.02 2.74 16 20 C 0.01 0.62 5.46 84.65 0.46 1.09 16 21 N -0.92 -52.90 13.29 21.45 0.28 -52.62 16 22 Si 0.95 43.76 29.54 68.60 2.03 45.78 16 23 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 25 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 26 C 0.05 1.11 5.59 86.32 0.48 1.59 16 27 C -0.07 -1.34 6.02 29.81 0.18 -1.16 16 28 C -0.17 -3.97 9.62 22.62 0.22 -3.75 16 29 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.53 7.64 -2.39 -0.02 0.52 16 31 H 0.07 0.54 7.67 -2.39 -0.02 0.52 16 32 H 0.15 1.50 6.28 -2.91 -0.02 1.48 16 33 H 0.16 1.17 8.06 -2.91 -0.02 1.14 16 34 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 35 H 0.11 2.48 7.98 -2.91 -0.02 2.45 16 36 H 0.07 1.37 8.06 -2.39 -0.02 1.35 16 37 H 0.08 2.10 6.62 -2.39 -0.02 2.09 16 38 H 0.08 2.29 7.93 -2.38 -0.02 2.27 16 39 H 0.07 1.82 8.06 -2.39 -0.02 1.80 16 40 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 41 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 43 H 0.05 0.97 8.08 -2.39 -0.02 0.95 16 44 H 0.08 1.65 7.91 -2.39 -0.02 1.63 16 45 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.09 1.46 8.05 -2.38 -0.02 1.45 16 47 H 0.11 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -68.52 391.20 4.37 -64.15 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.96 Total: 11.31 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: 5.66 Total: -18.54 kcal Atomic # 7 Polarization: -91.28 SS G_CDS: -3.30 Total: -94.58 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.97 Total: -8.12 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -68.52 4.37 -64.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363128520.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.445 kcal (2) G-P(sol) polarization free energy of solvation -68.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds