Wall clock time and date at job start Tue Mar 31 2020 14:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86799 * 120.00659 * 2 1 4 4 H 1.48494 * 109.47574 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46899 * 300.00421 * 3 2 1 6 6 H 1.48503 * 109.46611 * 60.00140 * 3 2 1 7 7 C 1.37883 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00606 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99528 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46669 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.46881 * 180.02562 * 10 9 7 12 12 N 1.46903 * 109.46888 * 180.02562 * 11 10 9 13 13 C 1.46962 * 111.00469 * 58.22526 * 12 11 10 14 14 C 1.53458 * 109.73855 * 165.12389 * 13 12 11 15 15 N 1.46312 * 108.18027 * 49.59836 * 14 13 12 16 16 C 1.34411 * 129.75890 * 163.59989 * 15 14 13 17 17 C 1.50703 * 126.48597 * 0.22127 * 16 15 14 18 18 C 1.50701 * 109.47064 * 89.99640 * 17 16 15 19 19 C 1.38233 * 120.00099 * 269.72899 * 18 17 16 20 20 C 1.38239 * 119.99655 * 179.76882 * 19 18 17 21 21 C 1.38230 * 120.00228 * 0.50243 * 20 19 18 22 22 C 1.38238 * 119.99995 * 359.75228 * 21 20 19 23 23 C 1.38238 * 120.00072 * 359.97438 * 22 21 20 24 24 N 1.30919 * 107.02937 * 180.48209 * 16 15 14 25 25 N 1.28988 * 109.75700 * 359.56957 * 24 16 15 26 26 C 1.29632 * 109.46943 * 0.34547 * 25 24 16 27 27 C 1.47393 * 110.99475 * 293.94536 * 12 11 10 28 28 H 0.97010 * 119.99847 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47042 * 60.00582 * 9 7 2 30 30 H 1.08996 * 109.47544 * 299.99923 * 9 7 2 31 31 H 1.08999 * 109.47008 * 60.00445 * 10 9 7 32 32 H 1.08998 * 109.47492 * 299.99593 * 10 9 7 33 33 H 1.08991 * 109.46994 * 59.99965 * 11 10 9 34 34 H 1.09002 * 109.46910 * 299.99623 * 11 10 9 35 35 H 1.08995 * 109.42736 * 285.20941 * 13 12 11 36 36 H 1.09005 * 109.42575 * 45.04278 * 13 12 11 37 37 H 1.09004 * 109.73001 * 289.92296 * 14 13 12 38 38 H 1.09009 * 109.71802 * 169.26828 * 14 13 12 39 39 H 1.09002 * 109.47152 * 329.99733 * 17 16 15 40 40 H 1.09001 * 109.46980 * 209.99833 * 17 16 15 41 41 H 1.08003 * 119.99927 * 359.97438 * 19 18 17 42 42 H 1.08000 * 119.99431 * 180.23215 * 20 19 18 43 43 H 1.07997 * 120.00220 * 179.73036 * 21 20 19 44 44 H 1.08002 * 119.99952 * 179.97438 * 22 21 20 45 45 H 1.07991 * 120.00062 * 179.97438 * 23 22 21 46 46 H 1.08998 * 109.74784 * 54.58567 * 27 12 11 47 47 H 1.08994 * 109.79854 * 293.86913 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 6 2.2450 -3.6621 -0.0005 11 6 1.4799 -4.9872 -0.0012 12 7 2.4345 -6.1038 -0.0006 13 6 3.3251 -6.0348 1.1664 14 6 4.0463 -7.3771 1.3481 15 7 4.6201 -7.7651 0.0593 16 6 5.5662 -8.6779 -0.2206 17 6 6.2849 -9.5565 0.7707 18 6 5.5204 -10.8430 0.9485 19 6 4.5480 -10.9397 1.9262 20 6 3.8435 -12.1183 2.0861 21 6 4.1185 -13.2034 1.2751 22 6 5.0946 -13.1084 0.3009 23 6 5.7953 -11.9280 0.1372 24 7 5.7491 -8.6555 -1.5168 25 7 4.9620 -7.7857 -2.0532 26 6 4.2541 -7.2155 -1.1289 27 6 3.2031 -6.1422 -1.2576 28 1 -0.4850 0.8401 0.0004 29 1 0.6239 -2.5567 -0.8903 30 1 0.6245 -2.5571 0.8896 31 1 2.8716 -3.6044 0.8895 32 1 2.8717 -3.6045 -0.8905 33 1 0.8536 -5.0446 -0.8913 34 1 0.8530 -5.0451 0.8886 35 1 4.0612 -5.2454 1.0146 36 1 2.7379 -5.8152 2.0581 37 1 3.3356 -8.1351 1.6774 38 1 4.8404 -7.2709 2.0873 39 1 6.3562 -9.0409 1.7284 40 1 7.2865 -9.7770 0.4014 41 1 4.3364 -10.0934 2.5629 42 1 3.0812 -12.1926 2.8475 43 1 3.5711 -14.1256 1.4029 44 1 5.3098 -13.9564 -0.3324 45 1 6.5581 -11.8539 -0.6236 46 1 3.6809 -5.1772 -1.4268 47 1 2.5386 -6.3750 -2.0897 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377849543.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:28 Heat of formation + Delta-G solvation = 99.778639 kcal Electronic energy + Delta-G solvation = -26878.394912 eV Core-core repulsion = 23254.898670 eV Total energy + Delta-G solvation = -3623.496242 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.34720 -39.54544 -38.61019 -35.31925 -34.24626 -33.29656 -31.59443 -31.21448 -30.83602 -29.85575 -27.71006 -26.58609 -25.14095 -24.08746 -22.90292 -22.44481 -21.95980 -20.92438 -20.72680 -19.13227 -17.44928 -17.07480 -16.66847 -16.39570 -15.76250 -15.47117 -15.42259 -15.09498 -14.63584 -14.50906 -14.37539 -14.26369 -13.73830 -13.55440 -13.48341 -12.92665 -12.77814 -12.63347 -12.50495 -12.09087 -11.93076 -11.76260 -11.55874 -11.34830 -11.34229 -11.28097 -10.95585 -10.86298 -10.62202 -10.37552 -10.18368 -9.82243 -9.64972 -9.28338 -9.23418 -9.17754 -8.96997 -8.43182 -8.25013 -6.07741 -4.10718 0.95435 1.09186 1.78222 2.37872 2.82731 3.25500 3.33560 3.37079 3.43073 3.60523 4.13860 4.27222 4.28443 4.39399 4.40021 4.41563 4.67288 4.69724 4.74685 4.81811 4.84780 5.10989 5.16083 5.26152 5.27518 5.28076 5.37204 5.40063 5.49521 5.54203 5.63513 5.67648 5.73835 5.79037 5.85231 6.05428 6.10690 6.12417 6.20103 6.25718 6.33550 6.51172 6.65849 6.76010 6.83913 6.87062 7.07943 7.56201 7.68548 7.90596 8.32987 8.71887 8.96109 9.54119 11.03201 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.025575 B = 0.002222 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.547382 B =12598.267148 C =12977.120661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.025 3.975 10 C -0.148 4.148 11 C 0.055 3.945 12 N -0.540 5.540 13 C 0.035 3.965 14 C 0.109 3.891 15 N -0.461 5.461 16 C 0.180 3.820 17 C 0.010 3.990 18 C -0.085 4.085 19 C -0.113 4.113 20 C -0.119 4.119 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.100 4.100 24 N -0.295 5.295 25 N -0.291 5.291 26 C 0.190 3.810 27 C 0.134 3.866 28 H 0.261 0.739 29 H 0.018 0.982 30 H 0.017 0.983 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.127 0.873 46 H 0.079 0.921 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.362 -24.662 6.645 27.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.012 4.012 10 C -0.186 4.186 11 C -0.072 4.072 12 N -0.264 5.264 13 C -0.094 4.094 14 C -0.015 4.015 15 N -0.152 5.152 16 C -0.087 4.087 17 C -0.029 4.029 18 C -0.086 4.086 19 C -0.131 4.131 20 C -0.137 4.137 21 C -0.137 4.137 22 C -0.137 4.137 23 C -0.118 4.118 24 N -0.136 5.136 25 N -0.130 5.130 26 C -0.078 4.078 27 C 0.004 3.996 28 H 0.070 0.930 29 H 0.036 0.964 30 H 0.035 0.965 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.123 0.877 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.109 0.891 40 H 0.126 0.874 41 H 0.137 0.863 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.145 0.855 46 H 0.097 0.903 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.498 -25.325 5.333 27.569 hybrid contribution 0.274 2.059 1.234 2.416 sum 9.772 -23.266 6.567 26.075 Atomic orbital electron populations 1.69963 1.06025 1.26587 1.50699 1.25022 0.94858 0.99293 0.95247 0.86558 0.80088 0.83827 0.77669 1.19813 1.20916 1.20972 1.21255 0.92940 0.91105 1.50768 0.92853 1.19012 0.93762 0.91092 0.97369 1.22282 1.00140 0.95795 1.00428 1.22414 0.93909 0.87392 1.03458 1.62464 1.17094 1.46140 1.00747 1.22458 0.96480 0.94161 0.96268 1.22239 0.98072 0.98721 0.82431 1.45894 1.30073 1.29607 1.09643 1.24187 0.94294 0.95114 0.95130 1.18904 0.97872 0.90354 0.95797 1.19603 0.97687 0.94526 0.96758 1.21037 0.95895 0.98006 0.98145 1.21130 0.99652 0.93260 0.99702 1.21197 0.97878 0.98755 0.95913 1.21181 0.96386 0.97891 0.98284 1.21114 0.99823 0.92536 0.98309 1.74508 1.19576 1.16067 1.03452 1.73973 1.06503 1.07163 1.25373 1.24721 1.00881 1.00484 0.81746 1.20743 0.91285 0.93266 0.94329 0.92977 0.96404 0.96503 0.93200 0.93102 0.90153 0.90142 0.92585 0.87708 0.88691 0.88632 0.89108 0.87362 0.86281 0.85939 0.86074 0.85902 0.85517 0.90310 0.87012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.31 9.11 -34.44 -0.31 -14.63 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.03 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.15 -2.70 4.50 -26.73 -0.12 -2.82 16 11 C 0.05 0.81 5.30 -3.82 -0.02 0.79 16 12 N -0.54 -7.00 4.86 -235.25 -1.14 -8.14 16 13 C 0.04 0.38 4.61 -3.55 -0.02 0.36 16 14 C 0.11 0.98 7.06 -3.91 -0.03 0.95 16 15 N -0.46 -5.71 3.12 -110.79 -0.35 -6.05 16 16 C 0.18 2.26 7.32 -155.64 -1.14 1.12 16 17 C 0.01 0.09 5.78 -29.03 -0.17 -0.08 16 18 C -0.08 -0.75 5.12 -104.62 -0.54 -1.29 16 19 C -0.11 -0.91 9.70 -39.58 -0.38 -1.30 16 20 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 21 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 22 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 23 C -0.10 -0.90 9.70 -39.58 -0.38 -1.28 16 24 N -0.30 -4.72 12.24 32.66 0.40 -4.32 16 25 N -0.29 -4.98 12.20 32.76 0.40 -4.58 16 26 C 0.19 2.82 7.86 -155.28 -1.22 1.60 16 27 C 0.13 1.84 5.71 -4.67 -0.03 1.81 16 28 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.89 6.72 -51.93 -0.35 0.55 16 32 H 0.05 0.95 6.45 -51.93 -0.34 0.61 16 33 H 0.08 1.20 8.12 -51.93 -0.42 0.77 16 34 H 0.08 1.15 8.12 -51.93 -0.42 0.73 16 35 H 0.06 0.68 7.09 -51.93 -0.37 0.31 16 36 H 0.10 1.00 7.99 -51.93 -0.42 0.58 16 37 H 0.09 0.77 8.03 -51.93 -0.42 0.35 16 38 H 0.10 0.60 7.98 -51.92 -0.41 0.18 16 39 H 0.09 0.55 7.86 -51.93 -0.41 0.14 16 40 H 0.11 0.81 8.09 -51.93 -0.42 0.39 16 41 H 0.12 0.75 7.95 -52.48 -0.42 0.33 16 42 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 45 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 46 H 0.08 1.14 6.27 -51.93 -0.33 0.81 16 47 H 0.11 1.48 8.14 -51.93 -0.42 1.05 16 LS Contribution 382.29 15.07 5.76 5.76 Total: -1.00 -33.49 382.29 -12.21 -45.70 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -7.21 Total: -2.36 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -5.79 Total: -16.80 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: 0.05 Total: -48.59 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.49 -12.21 -45.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377849543.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.482 kcal (2) G-P(sol) polarization free energy of solvation -33.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds