Wall clock time and date at job start Tue Mar 31 2020 14:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86799 * 120.00659 * 2 1 4 4 H 1.48494 * 109.47574 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46899 * 300.00421 * 3 2 1 6 6 H 1.48503 * 109.46611 * 60.00140 * 3 2 1 7 7 C 1.37883 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00606 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99528 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46669 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.46881 * 180.02562 * 10 9 7 12 12 N 1.46903 * 109.46888 * 180.02562 * 11 10 9 13 13 C 1.46962 * 111.00469 * 58.22526 * 12 11 10 14 14 C 1.53458 * 109.73855 * 165.12389 * 13 12 11 15 15 N 1.46312 * 108.18027 * 49.59836 * 14 13 12 16 16 C 1.34411 * 129.75890 * 163.59989 * 15 14 13 17 17 C 1.50703 * 126.48597 * 0.22127 * 16 15 14 18 18 C 1.50701 * 109.47064 * 89.99640 * 17 16 15 19 19 C 1.38233 * 120.00099 * 269.72899 * 18 17 16 20 20 C 1.38239 * 119.99655 * 179.76882 * 19 18 17 21 21 C 1.38230 * 120.00228 * 0.50243 * 20 19 18 22 22 C 1.38238 * 119.99995 * 359.75228 * 21 20 19 23 23 C 1.38238 * 120.00072 * 359.97438 * 22 21 20 24 24 N 1.30919 * 107.02937 * 180.48209 * 16 15 14 25 25 N 1.28988 * 109.75700 * 359.56957 * 24 16 15 26 26 C 1.29632 * 109.46943 * 0.34547 * 25 24 16 27 27 C 1.47393 * 110.99475 * 293.94536 * 12 11 10 28 28 H 0.97010 * 119.99847 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47042 * 60.00582 * 9 7 2 30 30 H 1.08996 * 109.47544 * 299.99923 * 9 7 2 31 31 H 1.08999 * 109.47008 * 60.00445 * 10 9 7 32 32 H 1.08998 * 109.47492 * 299.99593 * 10 9 7 33 33 H 1.08991 * 109.46994 * 59.99965 * 11 10 9 34 34 H 1.09002 * 109.46910 * 299.99623 * 11 10 9 35 35 H 1.08995 * 109.42736 * 285.20941 * 13 12 11 36 36 H 1.09005 * 109.42575 * 45.04278 * 13 12 11 37 37 H 1.09004 * 109.73001 * 289.92296 * 14 13 12 38 38 H 1.09009 * 109.71802 * 169.26828 * 14 13 12 39 39 H 1.09002 * 109.47152 * 329.99733 * 17 16 15 40 40 H 1.09001 * 109.46980 * 209.99833 * 17 16 15 41 41 H 1.08003 * 119.99927 * 359.97438 * 19 18 17 42 42 H 1.08000 * 119.99431 * 180.23215 * 20 19 18 43 43 H 1.07997 * 120.00220 * 179.73036 * 21 20 19 44 44 H 1.08002 * 119.99952 * 179.97438 * 22 21 20 45 45 H 1.07991 * 120.00062 * 179.97438 * 23 22 21 46 46 H 1.08998 * 109.74784 * 54.58567 * 27 12 11 47 47 H 1.08994 * 109.79854 * 293.86913 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 6 2.2450 -3.6621 -0.0005 11 6 1.4799 -4.9872 -0.0012 12 7 2.4345 -6.1038 -0.0006 13 6 3.3251 -6.0348 1.1664 14 6 4.0463 -7.3771 1.3481 15 7 4.6201 -7.7651 0.0593 16 6 5.5662 -8.6779 -0.2206 17 6 6.2849 -9.5565 0.7707 18 6 5.5204 -10.8430 0.9485 19 6 4.5480 -10.9397 1.9262 20 6 3.8435 -12.1183 2.0861 21 6 4.1185 -13.2034 1.2751 22 6 5.0946 -13.1084 0.3009 23 6 5.7953 -11.9280 0.1372 24 7 5.7491 -8.6555 -1.5168 25 7 4.9620 -7.7857 -2.0532 26 6 4.2541 -7.2155 -1.1289 27 6 3.2031 -6.1422 -1.2576 28 1 -0.4850 0.8401 0.0004 29 1 0.6239 -2.5567 -0.8903 30 1 0.6245 -2.5571 0.8896 31 1 2.8716 -3.6044 0.8895 32 1 2.8717 -3.6045 -0.8905 33 1 0.8536 -5.0446 -0.8913 34 1 0.8530 -5.0451 0.8886 35 1 4.0612 -5.2454 1.0146 36 1 2.7379 -5.8152 2.0581 37 1 3.3356 -8.1351 1.6774 38 1 4.8404 -7.2709 2.0873 39 1 6.3562 -9.0409 1.7284 40 1 7.2865 -9.7770 0.4014 41 1 4.3364 -10.0934 2.5629 42 1 3.0812 -12.1926 2.8475 43 1 3.5711 -14.1256 1.4029 44 1 5.3098 -13.9564 -0.3324 45 1 6.5581 -11.8539 -0.6236 46 1 3.6809 -5.1772 -1.4268 47 1 2.5386 -6.3750 -2.0897 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377849543.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:27 Heat of formation + Delta-G solvation = 81.428023 kcal Electronic energy + Delta-G solvation = -26879.190655 eV Core-core repulsion = 23254.898670 eV Total energy + Delta-G solvation = -3624.291985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.36998 -40.12640 -39.69447 -36.44753 -35.53455 -34.63281 -33.04018 -31.95689 -31.77740 -30.83821 -28.89598 -27.71054 -26.49299 -25.21087 -23.68436 -23.47027 -23.00456 -22.21037 -21.65966 -20.22546 -18.52259 -18.23217 -17.92461 -17.44658 -16.70000 -16.63446 -16.25010 -16.05772 -15.90336 -15.68435 -15.39388 -15.35300 -14.79916 -14.35490 -14.27844 -14.14299 -13.86078 -13.68326 -13.42671 -13.28990 -13.13636 -12.89010 -12.84663 -12.61101 -12.49569 -12.40250 -12.38191 -12.11443 -11.87224 -11.49550 -11.47385 -11.39042 -11.29863 -11.04236 -10.56548 -10.18911 -9.81361 -9.68623 -9.42016 -8.21218 -6.31862 0.33773 0.50958 0.81522 1.37217 1.38822 1.48755 1.50498 1.74511 2.38650 2.55147 2.81371 3.11887 3.21373 3.42291 3.48522 3.73890 3.80576 3.95311 4.03084 4.12794 4.15961 4.16388 4.26010 4.30814 4.35151 4.40955 4.51813 4.59801 4.61367 4.64495 4.68766 4.74580 4.80485 4.89877 4.92315 5.03586 5.12075 5.14351 5.17043 5.23307 5.49854 5.55807 5.63330 5.65465 5.67232 5.74251 5.83128 5.84934 5.95382 6.11497 6.24363 6.85556 7.37426 7.65406 8.89684 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.025575 B = 0.002222 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.547382 B =12598.267148 C =12977.120661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.001 3.999 3 Si 0.958 3.042 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.054 0.946 9 C 0.028 3.972 10 C -0.131 4.131 11 C 0.069 3.931 12 N -0.533 5.533 13 C 0.030 3.970 14 C 0.107 3.893 15 N -0.459 5.459 16 C 0.197 3.803 17 C 0.013 3.987 18 C -0.096 4.096 19 C -0.118 4.118 20 C -0.128 4.128 21 C -0.127 4.127 22 C -0.132 4.132 23 C -0.119 4.119 24 N -0.338 5.338 25 N -0.330 5.330 26 C 0.179 3.821 27 C 0.137 3.863 28 H 0.263 0.737 29 H -0.008 1.008 30 H -0.001 1.001 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.044 0.956 36 H 0.125 0.875 37 H 0.113 0.887 38 H 0.133 0.867 39 H 0.123 0.877 40 H 0.115 0.885 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.135 0.865 45 H 0.124 0.876 46 H 0.068 0.932 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.105 -25.368 8.902 28.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.784 3.216 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.202 1.202 7 C -0.580 4.580 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.170 4.170 11 C -0.059 4.059 12 N -0.257 5.257 13 C -0.099 4.099 14 C -0.014 4.014 15 N -0.149 5.149 16 C -0.072 4.072 17 C -0.026 4.026 18 C -0.097 4.097 19 C -0.136 4.136 20 C -0.146 4.146 21 C -0.145 4.145 22 C -0.150 4.150 23 C -0.137 4.137 24 N -0.178 5.178 25 N -0.170 5.170 26 C -0.091 4.091 27 C 0.007 3.993 28 H 0.072 0.928 29 H 0.011 0.989 30 H 0.017 0.983 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.062 0.938 36 H 0.143 0.857 37 H 0.131 0.869 38 H 0.151 0.849 39 H 0.141 0.859 40 H 0.133 0.867 41 H 0.159 0.841 42 H 0.160 0.840 43 H 0.157 0.843 44 H 0.153 0.847 45 H 0.142 0.858 46 H 0.086 0.914 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.254 -26.047 7.603 29.007 hybrid contribution 0.035 2.209 0.562 2.280 sum 10.288 -23.838 8.165 27.218 Atomic orbital electron populations 1.70079 1.07569 1.27630 1.51707 1.25910 0.95746 1.03107 0.94928 0.85497 0.79011 0.79316 0.77819 1.18960 1.20591 1.20206 1.21711 0.93276 0.92671 1.50312 0.92777 1.18914 0.94283 0.92580 0.95202 1.22056 0.98912 0.95529 1.00466 1.22193 0.93864 0.85994 1.03814 1.62482 1.17430 1.44535 1.01242 1.22622 0.96222 0.95152 0.95860 1.22560 0.99451 0.97889 0.81541 1.46095 1.29726 1.29077 1.10035 1.24865 0.93230 0.94320 0.94773 1.19125 0.97538 0.89839 0.96126 1.19681 0.98361 0.94414 0.97291 1.21332 0.95325 0.98882 0.98036 1.21463 0.99984 0.93155 1.00030 1.21509 0.97708 0.99712 0.95592 1.21422 0.96596 0.98155 0.98831 1.21286 1.00339 0.93332 0.98720 1.74417 1.20794 1.17078 1.05510 1.73867 1.07697 1.08325 1.27082 1.24742 1.00979 1.00764 0.82591 1.20663 0.91139 0.92611 0.94856 0.92783 0.98911 0.98266 0.92470 0.93713 0.90582 0.89106 0.93767 0.85736 0.86928 0.84917 0.85920 0.86715 0.84107 0.84046 0.84336 0.84736 0.85827 0.91376 0.87120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.23 13.29 21.45 0.28 -54.94 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.96 43.62 29.54 68.60 2.03 45.64 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 7 C -0.54 -29.87 9.11 25.60 0.23 -29.64 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 9 C 0.03 1.38 4.97 29.85 0.15 1.53 16 10 C -0.13 -4.75 4.50 30.60 0.14 -4.61 16 11 C 0.07 1.95 5.30 86.31 0.46 2.41 16 12 N -0.53 -12.99 4.86 -898.19 -4.36 -17.35 16 13 C 0.03 0.56 4.61 86.45 0.40 0.96 16 14 C 0.11 1.53 7.06 86.57 0.61 2.14 16 15 N -0.46 -10.45 3.12 -504.43 -1.57 -12.02 16 16 C 0.20 4.63 7.32 138.21 1.01 5.65 16 17 C 0.01 0.19 5.78 29.10 0.17 0.35 16 18 C -0.10 -1.51 5.12 -19.86 -0.10 -1.61 16 19 C -0.12 -1.55 9.70 22.27 0.22 -1.34 16 20 C -0.13 -1.66 10.05 22.27 0.22 -1.44 16 21 C -0.13 -1.73 10.05 22.27 0.22 -1.51 16 22 C -0.13 -2.02 10.05 22.27 0.22 -1.80 16 23 C -0.12 -2.04 9.70 22.27 0.22 -1.82 16 24 N -0.34 -10.84 12.24 -50.58 -0.62 -11.46 16 25 N -0.33 -11.52 12.20 -50.27 -0.61 -12.14 16 26 C 0.18 5.26 7.86 138.12 1.09 6.34 16 27 C 0.14 3.75 5.71 85.49 0.49 4.24 16 28 H 0.26 14.70 8.31 -92.70 -0.77 13.93 16 29 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 30 H 0.00 -0.06 8.14 -2.39 -0.02 -0.07 16 31 H 0.06 1.98 6.72 -2.39 -0.02 1.97 16 32 H 0.04 1.67 6.45 -2.39 -0.02 1.66 16 33 H 0.08 2.24 8.12 -2.39 -0.02 2.22 16 34 H 0.09 2.44 8.12 -2.39 -0.02 2.42 16 35 H 0.04 0.97 7.09 -2.39 -0.02 0.95 16 36 H 0.12 1.91 7.99 -2.38 -0.02 1.89 16 37 H 0.11 1.30 8.03 -2.38 -0.02 1.28 16 38 H 0.13 0.97 7.98 -2.38 -0.02 0.95 16 39 H 0.12 0.97 7.86 -2.39 -0.02 0.95 16 40 H 0.11 1.51 8.09 -2.39 -0.02 1.49 16 41 H 0.14 1.15 7.95 -2.91 -0.02 1.12 16 42 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 43 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 44 H 0.13 1.58 8.06 -2.91 -0.02 1.56 16 45 H 0.12 2.07 8.06 -2.92 -0.02 2.04 16 46 H 0.07 2.00 6.27 -2.39 -0.01 1.98 16 47 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -74.19 382.29 2.30 -71.89 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 0.95 Total: 10.00 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: 6.20 Total: -19.63 kcal Atomic # 7 Polarization: -101.02 SS G_CDS: -6.88 Total: -107.91 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -74.19 2.30 -71.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377849543.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.317 kcal (2) G-P(sol) polarization free energy of solvation -74.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds