Wall clock time and date at job start Tue Mar 31 2020 14:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46496 * 120.00043 * 2 1 4 4 C 1.50700 * 109.47693 * 270.00539 * 3 2 1 5 5 H 1.08001 * 119.99610 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00111 * 180.02562 * 4 3 2 7 7 N 1.31506 * 120.00282 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99613 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.47239 * 89.99962 * 8 6 4 10 10 H 1.48501 * 109.46953 * 209.99838 * 8 6 4 11 11 H 1.48506 * 109.47003 * 329.99675 * 8 6 4 12 12 C 1.34782 * 120.00187 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99701 * 179.97438 * 12 2 1 14 14 C 1.50701 * 119.99601 * 359.97438 * 12 2 1 15 15 C 1.53006 * 109.46570 * 180.02562 * 14 12 2 16 16 N 1.46900 * 109.46478 * 179.97438 * 15 14 12 17 17 C 1.46473 * 111.00095 * 66.05255 * 16 15 14 18 18 C 1.46673 * 115.72431 * 141.67339 * 17 16 15 19 19 S 1.83678 * 108.61780 * 64.53773 * 18 17 16 20 20 C 1.80459 * 102.68654 * 294.47937 * 19 18 17 21 21 C 1.53846 * 113.20027 * 313.09228 * 20 19 18 22 22 C 1.53789 * 87.06128 * 220.43892 * 21 20 19 23 23 C 1.53785 * 113.26760 * 215.98080 * 20 19 18 24 24 C 1.53769 * 115.57745 * 84.36511 * 20 19 18 25 25 C 1.45961 * 111.00249 * 305.56296 * 16 15 14 26 26 H 1.09007 * 109.46939 * 269.99781 * 1 2 3 27 27 H 1.08991 * 109.47410 * 29.99459 * 1 2 3 28 28 H 1.09003 * 109.47180 * 150.00009 * 1 2 3 29 29 H 1.09008 * 109.47326 * 30.00331 * 3 2 1 30 30 H 1.09002 * 109.47431 * 150.00461 * 3 2 1 31 31 H 0.97000 * 119.99900 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.47464 * 60.00345 * 14 12 2 33 33 H 1.08998 * 109.47247 * 299.99574 * 14 12 2 34 34 H 1.08997 * 109.47007 * 59.99990 * 15 14 12 35 35 H 1.08998 * 109.46926 * 299.99694 * 15 14 12 36 36 H 1.09001 * 108.23642 * 20.04568 * 17 16 15 37 37 H 1.09007 * 108.22959 * 263.28893 * 17 16 15 38 38 H 1.08997 * 109.60540 * 304.80231 * 18 17 16 39 39 H 1.08997 * 109.75766 * 184.36093 * 18 17 16 40 40 H 1.08991 * 113.62207 * 334.98268 * 21 20 19 41 41 H 1.09002 * 113.61187 * 105.90208 * 21 20 19 42 42 H 1.09003 * 113.61276 * 270.90547 * 22 21 20 43 43 H 1.09000 * 113.68846 * 140.01391 * 22 21 20 44 44 H 1.08996 * 113.61190 * 254.04084 * 23 20 19 45 45 H 1.08997 * 113.61335 * 24.86380 * 23 20 19 46 46 H 1.09007 * 108.45834 * 77.92271 * 24 20 19 47 47 H 1.09005 * 108.46137 * 195.27752 * 24 20 19 48 48 H 1.08996 * 109.70417 * 346.68978 * 25 16 15 49 49 H 1.08995 * 109.70336 * 107.26016 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0980 1.0960 -2.2417 6 6 3.1268 2.8776 -1.6726 7 7 3.5542 3.6176 -0.6730 8 14 3.4386 3.4166 -3.4338 9 1 2.3091 4.2598 -3.9008 10 1 4.6992 4.1991 -3.4961 11 1 3.5556 2.2193 -4.3045 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1671 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3797 -3.6352 -0.0005 16 7 1.6451 -4.9074 0.0001 17 6 0.9016 -5.0848 -1.2493 18 6 0.8736 -6.4498 -1.7852 19 16 -0.0305 -7.5257 -0.6024 20 6 1.0433 -7.5101 0.8479 21 6 2.5248 -7.7473 0.5077 22 6 2.5909 -8.6284 1.7665 23 6 1.0800 -8.8560 1.5910 24 6 0.8513 -6.3206 1.8033 25 6 0.6976 -4.9638 1.1089 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8899 -0.5137 28 1 -0.3634 -0.8900 -0.5138 29 1 1.6084 2.0284 0.5139 30 1 3.1499 1.1384 0.5138 31 1 4.0316 4.4431 -0.8503 32 1 0.7584 -2.5299 -0.8903 33 1 0.7591 -2.5303 0.8897 34 1 3.0063 -3.5774 0.8894 35 1 3.0063 -3.5774 -0.8905 36 1 1.3406 -4.4314 -2.0033 37 1 -0.1265 -4.7627 -1.0830 38 1 1.8930 -6.8158 -1.9071 39 1 0.3645 -6.4570 -2.7489 40 1 2.6770 -8.2989 -0.4199 41 1 3.1369 -6.8476 0.5719 42 1 2.8472 -8.0780 2.6717 43 1 3.1865 -9.5321 1.6376 44 1 0.5260 -8.8518 2.5296 45 1 0.8363 -9.7103 0.9594 46 1 -0.0383 -6.5024 2.4064 47 1 1.7119 -6.2714 2.4705 48 1 0.9115 -4.1626 1.8162 49 1 -0.3187 -4.8575 0.7296 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411869365.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:18 Heat of formation + Delta-G solvation = -1.580271 kcal Electronic energy + Delta-G solvation = -26534.669931 eV Core-core repulsion = 23009.929637 eV Total energy + Delta-G solvation = -3524.740294 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.02732 -39.10084 -37.85572 -34.86414 -32.79660 -32.47343 -31.81891 -29.02584 -27.52132 -26.01525 -25.85284 -25.42606 -23.93928 -23.02645 -22.45566 -20.36509 -19.05140 -18.34371 -17.09497 -16.70388 -16.53400 -15.87042 -15.59255 -15.30375 -15.10603 -14.94882 -14.80497 -14.65113 -14.26444 -13.81869 -13.33113 -13.02375 -12.86949 -12.67831 -12.45264 -12.27240 -12.18327 -12.13659 -12.03507 -11.87614 -11.75748 -11.26734 -11.21580 -11.07292 -10.92554 -10.81175 -10.75666 -10.60844 -10.60166 -10.42337 -10.18821 -9.66313 -9.59088 -9.01431 -8.51935 -8.46043 -7.78355 -7.68388 -6.07355 -4.12359 1.65996 2.43896 3.27405 3.33501 3.35815 3.41193 3.65304 3.98029 4.23156 4.35803 4.42014 4.47636 4.59656 4.76774 4.89480 4.91264 5.02306 5.09381 5.16423 5.18052 5.27497 5.29930 5.30984 5.45186 5.46880 5.52961 5.57338 5.60285 5.62875 5.67983 5.69401 5.73958 5.83032 5.87339 5.91460 5.97792 6.01585 6.15797 6.18545 6.24735 6.88170 6.91700 7.02668 7.40697 7.50035 7.88724 8.20092 8.37779 8.86538 9.05327 9.52892 11.00776 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.024389 B = 0.002535 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.768638 B =11043.471392 C =11228.365380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.603 5.603 3 C 0.244 3.756 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.506 3.494 13 O -0.542 6.542 14 C -0.176 4.176 15 C 0.072 3.928 16 N -0.521 5.521 17 C 0.038 3.962 18 C -0.059 4.059 19 S -0.275 6.275 20 C -0.028 4.028 21 C -0.117 4.117 22 C -0.139 4.139 23 C -0.114 4.114 24 C -0.082 4.082 25 C 0.043 3.957 26 H 0.043 0.957 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.031 0.969 30 H 0.044 0.956 31 H 0.264 0.736 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.088 0.912 46 H 0.062 0.938 47 H 0.069 0.931 48 H 0.073 0.927 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.544 -23.431 3.876 25.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.336 5.336 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.292 3.708 13 O -0.420 6.420 14 C -0.218 4.218 15 C -0.056 4.056 16 N -0.243 5.243 17 C -0.091 4.091 18 C -0.208 4.208 19 S -0.045 6.045 20 C -0.138 4.138 21 C -0.156 4.156 22 C -0.178 4.178 23 C -0.153 4.153 24 C -0.123 4.123 25 C -0.086 4.086 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.124 0.876 40 H 0.097 0.903 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.107 0.893 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.091 0.909 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.449 -24.163 3.789 25.876 hybrid contribution 0.453 1.825 -0.940 2.103 sum -7.997 -22.337 2.849 23.896 Atomic orbital electron populations 1.21614 0.81559 1.02463 1.00311 1.48189 1.06113 1.07994 1.71262 1.19288 0.92544 0.78136 0.97511 1.21414 1.36573 1.06284 0.92249 0.92569 1.24940 0.95331 0.96393 0.97466 1.69927 1.38334 1.14349 1.30754 0.86494 0.77717 0.78594 0.84605 1.20632 1.21026 1.19902 1.20214 0.88065 0.84991 0.77550 1.90674 1.13854 1.87267 1.50215 1.22440 1.00563 0.95318 1.03490 1.22168 0.94860 0.83909 1.04639 1.62449 1.26164 1.33435 1.02229 1.21189 0.98164 0.96398 0.93380 1.22549 1.03239 0.96215 0.98756 1.86690 1.38120 1.66231 1.13414 1.23893 0.97146 0.97724 0.95052 1.23134 0.94187 1.00660 0.97643 1.22854 0.95912 1.00208 0.98835 1.22959 0.96995 0.95533 0.99823 1.21623 1.01876 0.92259 0.96513 1.22452 0.95106 0.96897 0.94107 0.93827 0.90788 0.92657 0.95086 0.93836 0.92678 0.89683 0.89574 0.89561 0.89693 0.90883 0.92783 0.89231 0.87574 0.90251 0.89218 0.89998 0.91288 0.91144 0.89329 0.91892 0.91259 0.90891 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 10.24 59.85 0.61 1.93 16 2 N -0.60 -12.62 2.86 -182.95 -0.52 -13.14 16 3 C 0.24 6.40 5.16 -5.20 -0.03 6.37 16 4 C -0.53 -14.93 9.39 -34.44 -0.32 -15.25 16 5 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 8 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.51 10.12 7.67 -10.98 -0.08 10.04 16 13 O -0.54 -13.25 15.56 5.56 0.09 -13.16 16 14 C -0.18 -2.40 3.68 -27.88 -0.10 -2.50 16 15 C 0.07 0.93 4.32 -3.82 -0.02 0.91 16 16 N -0.52 -5.36 3.08 -239.48 -0.74 -6.10 16 17 C 0.04 0.37 3.81 -7.08 -0.03 0.34 16 18 C -0.06 -0.53 6.09 34.14 0.21 -0.32 16 19 S -0.27 -2.76 21.04 -107.50 -2.26 -5.02 16 20 C -0.03 -0.25 0.87 -89.37 -0.08 -0.33 16 21 C -0.12 -1.03 5.64 -25.88 -0.15 -1.18 16 22 C -0.14 -1.04 7.69 -25.91 -0.20 -1.24 16 23 C -0.11 -0.90 7.21 -25.91 -0.19 -1.09 16 24 C -0.08 -0.73 4.91 -26.23 -0.13 -0.86 16 25 C 0.04 0.41 4.46 -4.23 -0.02 0.39 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 28 H 0.05 0.70 6.44 -51.93 -0.33 0.36 16 29 H 0.03 0.82 8.07 -51.92 -0.42 0.40 16 30 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.08 1.06 6.52 -51.93 -0.34 0.73 16 33 H 0.09 1.02 6.37 -51.93 -0.33 0.69 16 34 H 0.09 1.20 8.10 -51.93 -0.42 0.78 16 35 H 0.08 1.22 7.85 -51.93 -0.41 0.81 16 36 H 0.07 0.73 7.23 -51.93 -0.38 0.36 16 37 H 0.05 0.53 6.79 -51.93 -0.35 0.17 16 38 H 0.09 0.81 7.16 -51.93 -0.37 0.44 16 39 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 0.72 7.70 -51.93 -0.40 0.32 16 41 H 0.09 0.91 7.32 -51.93 -0.38 0.53 16 42 H 0.08 0.59 7.50 -51.93 -0.39 0.20 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 45 H 0.09 0.72 8.08 -51.93 -0.42 0.30 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.60 7.05 -51.93 -0.37 0.24 16 48 H 0.07 0.70 6.42 -51.93 -0.33 0.37 16 49 H 0.06 0.59 6.77 -51.93 -0.35 0.23 16 LS Contribution 380.92 15.07 5.74 5.74 Total: -1.00 -32.11 380.92 -11.04 -43.15 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -8.45 Total: -1.25 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -0.61 Total: -1.15 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: -0.52 Total: -45.12 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.09 Total: -13.16 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: -2.76 SS G_CDS: -2.26 Total: -5.02 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.11 -11.04 -43.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411869365.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.571 kcal (2) G-P(sol) polarization free energy of solvation -32.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds