Wall clock time and date at job start Tue Mar 31 2020 14:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46496 * 120.00043 * 2 1 4 4 C 1.50700 * 109.47693 * 270.00539 * 3 2 1 5 5 H 1.08001 * 119.99610 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00111 * 180.02562 * 4 3 2 7 7 N 1.31506 * 120.00282 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99613 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.47239 * 89.99962 * 8 6 4 10 10 H 1.48501 * 109.46953 * 209.99838 * 8 6 4 11 11 H 1.48506 * 109.47003 * 329.99675 * 8 6 4 12 12 C 1.34782 * 120.00187 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99701 * 179.97438 * 12 2 1 14 14 C 1.50701 * 119.99601 * 359.97438 * 12 2 1 15 15 C 1.53006 * 109.46570 * 180.02562 * 14 12 2 16 16 N 1.46900 * 109.46478 * 179.97438 * 15 14 12 17 17 C 1.46473 * 111.00095 * 66.05255 * 16 15 14 18 18 C 1.46673 * 115.72431 * 141.67339 * 17 16 15 19 19 S 1.83678 * 108.61780 * 64.53773 * 18 17 16 20 20 C 1.80459 * 102.68654 * 294.47937 * 19 18 17 21 21 C 1.53846 * 113.20027 * 313.09228 * 20 19 18 22 22 C 1.53789 * 87.06128 * 220.43892 * 21 20 19 23 23 C 1.53785 * 113.26760 * 215.98080 * 20 19 18 24 24 C 1.53769 * 115.57745 * 84.36511 * 20 19 18 25 25 C 1.45961 * 111.00249 * 305.56296 * 16 15 14 26 26 H 1.09007 * 109.46939 * 269.99781 * 1 2 3 27 27 H 1.08991 * 109.47410 * 29.99459 * 1 2 3 28 28 H 1.09003 * 109.47180 * 150.00009 * 1 2 3 29 29 H 1.09008 * 109.47326 * 30.00331 * 3 2 1 30 30 H 1.09002 * 109.47431 * 150.00461 * 3 2 1 31 31 H 0.97000 * 119.99900 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.47464 * 60.00345 * 14 12 2 33 33 H 1.08998 * 109.47247 * 299.99574 * 14 12 2 34 34 H 1.08997 * 109.47007 * 59.99990 * 15 14 12 35 35 H 1.08998 * 109.46926 * 299.99694 * 15 14 12 36 36 H 1.09001 * 108.23642 * 20.04568 * 17 16 15 37 37 H 1.09007 * 108.22959 * 263.28893 * 17 16 15 38 38 H 1.08997 * 109.60540 * 304.80231 * 18 17 16 39 39 H 1.08997 * 109.75766 * 184.36093 * 18 17 16 40 40 H 1.08991 * 113.62207 * 334.98268 * 21 20 19 41 41 H 1.09002 * 113.61187 * 105.90208 * 21 20 19 42 42 H 1.09003 * 113.61276 * 270.90547 * 22 21 20 43 43 H 1.09000 * 113.68846 * 140.01391 * 22 21 20 44 44 H 1.08996 * 113.61190 * 254.04084 * 23 20 19 45 45 H 1.08997 * 113.61335 * 24.86380 * 23 20 19 46 46 H 1.09007 * 108.45834 * 77.92271 * 24 20 19 47 47 H 1.09005 * 108.46137 * 195.27752 * 24 20 19 48 48 H 1.08996 * 109.70417 * 346.68978 * 25 16 15 49 49 H 1.08995 * 109.70336 * 107.26016 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0980 1.0960 -2.2417 6 6 3.1268 2.8776 -1.6726 7 7 3.5542 3.6176 -0.6730 8 14 3.4386 3.4166 -3.4338 9 1 2.3091 4.2598 -3.9008 10 1 4.6992 4.1991 -3.4961 11 1 3.5556 2.2193 -4.3045 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1671 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3797 -3.6352 -0.0005 16 7 1.6451 -4.9074 0.0001 17 6 0.9016 -5.0848 -1.2493 18 6 0.8736 -6.4498 -1.7852 19 16 -0.0305 -7.5257 -0.6024 20 6 1.0433 -7.5101 0.8479 21 6 2.5248 -7.7473 0.5077 22 6 2.5909 -8.6284 1.7665 23 6 1.0800 -8.8560 1.5910 24 6 0.8513 -6.3206 1.8033 25 6 0.6976 -4.9638 1.1089 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8899 -0.5137 28 1 -0.3634 -0.8900 -0.5138 29 1 1.6084 2.0284 0.5139 30 1 3.1499 1.1384 0.5138 31 1 4.0316 4.4431 -0.8503 32 1 0.7584 -2.5299 -0.8903 33 1 0.7591 -2.5303 0.8897 34 1 3.0063 -3.5774 0.8894 35 1 3.0063 -3.5774 -0.8905 36 1 1.3406 -4.4314 -2.0033 37 1 -0.1265 -4.7627 -1.0830 38 1 1.8930 -6.8158 -1.9071 39 1 0.3645 -6.4570 -2.7489 40 1 2.6770 -8.2989 -0.4199 41 1 3.1369 -6.8476 0.5719 42 1 2.8472 -8.0780 2.6717 43 1 3.1865 -9.5321 1.6376 44 1 0.5260 -8.8518 2.5296 45 1 0.8363 -9.7103 0.9594 46 1 -0.0383 -6.5024 2.4064 47 1 1.7119 -6.2714 2.4705 48 1 0.9115 -4.1626 1.8162 49 1 -0.3187 -4.8575 0.7296 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411869365.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:18 Heat of formation + Delta-G solvation = -19.993525 kcal Electronic energy + Delta-G solvation = -26535.468390 eV Core-core repulsion = 23009.929637 eV Total energy + Delta-G solvation = -3525.538753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.06400 -40.28854 -38.80863 -36.61325 -34.77409 -33.47112 -32.72845 -30.40759 -29.02992 -27.31165 -26.67427 -26.30019 -25.31378 -23.97332 -23.74127 -21.33540 -19.97575 -19.60813 -18.72518 -18.12399 -17.72197 -17.12939 -16.75832 -16.64364 -16.21588 -16.01694 -15.85381 -15.61254 -15.35284 -14.97312 -14.45288 -14.20384 -14.11905 -13.86200 -13.56205 -13.46421 -13.37132 -13.26623 -13.17525 -13.00061 -12.85513 -12.79349 -12.74920 -12.50580 -12.22979 -11.98092 -11.88529 -11.73305 -11.71811 -11.46963 -11.29256 -11.11207 -10.66636 -10.64757 -10.31735 -9.43944 -9.39477 -8.55309 -8.24704 -6.39914 0.94380 1.34809 1.37810 1.48036 1.72177 1.82126 2.29562 2.43461 2.86558 3.04827 3.55878 3.70562 3.75322 3.78917 3.86884 3.96496 3.99955 4.07403 4.22422 4.31051 4.36014 4.43221 4.49670 4.55553 4.59097 4.67257 4.74466 4.83002 4.86028 4.88631 4.91906 4.92604 4.96478 4.99752 5.02105 5.07081 5.14033 5.20554 5.22291 5.26674 5.32840 5.53460 5.53965 5.81612 6.01934 6.03663 6.08417 6.67230 6.77540 7.26161 7.46960 8.82406 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.024389 B = 0.002535 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.768638 B =11043.471392 C =11228.365380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.613 5.613 3 C 0.258 3.742 4 C -0.542 4.542 5 H 0.052 0.948 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.968 3.032 9 H -0.263 1.263 10 H -0.281 1.281 11 H -0.272 1.272 12 C 0.496 3.504 13 O -0.597 6.597 14 C -0.155 4.155 15 C 0.084 3.916 16 N -0.516 5.516 17 C 0.038 3.962 18 C -0.053 4.053 19 S -0.298 6.298 20 C -0.027 4.027 21 C -0.117 4.117 22 C -0.133 4.133 23 C -0.110 4.110 24 C -0.081 4.081 25 C 0.042 3.958 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.022 0.978 30 H -0.003 1.003 31 H 0.267 0.733 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.120 0.880 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.074 0.926 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.361 -24.749 3.195 27.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.344 5.344 3 C 0.136 3.864 4 C -0.581 4.581 5 H 0.071 0.929 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.792 3.208 9 H -0.188 1.188 10 H -0.206 1.206 11 H -0.197 1.197 12 C 0.285 3.715 13 O -0.479 6.479 14 C -0.196 4.196 15 C -0.045 4.045 16 N -0.238 5.238 17 C -0.091 4.091 18 C -0.201 4.201 19 S -0.068 6.068 20 C -0.137 4.137 21 C -0.156 4.156 22 C -0.171 4.171 23 C -0.149 4.149 24 C -0.122 4.122 25 C -0.087 4.087 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.110 0.890 29 H 0.040 0.960 30 H 0.015 0.985 31 H 0.076 0.924 32 H 0.124 0.876 33 H 0.132 0.868 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.138 0.862 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.105 0.895 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.093 0.907 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.326 -25.506 3.114 27.693 hybrid contribution 1.009 2.199 -0.679 2.514 sum -9.317 -23.307 2.435 25.218 Atomic orbital electron populations 1.21903 0.77983 1.03859 1.02496 1.48234 1.08362 1.06545 1.71241 1.18747 0.91080 0.80539 0.96012 1.21687 1.36868 1.06553 0.92996 0.92926 1.25878 0.94886 0.96442 1.02040 1.70048 1.38904 1.14829 1.33090 0.85406 0.78105 0.78239 0.79008 1.18785 1.20612 1.19701 1.21323 0.87818 0.86530 0.75844 1.90644 1.16601 1.88182 1.52461 1.22381 1.00299 0.91227 1.05692 1.21936 0.94674 0.84811 1.03065 1.62464 1.26789 1.31444 1.03087 1.21223 0.98206 0.96812 0.92860 1.22538 1.03085 0.95428 0.99021 1.86775 1.38866 1.66731 1.14461 1.23975 0.96684 0.98409 0.94675 1.23076 0.94023 1.00298 0.98199 1.22834 0.95853 1.00237 0.98226 1.22943 0.97248 0.94809 0.99941 1.21608 1.02317 0.91801 0.96438 1.22509 0.94963 0.97435 0.93751 0.91181 0.91715 0.88957 0.96026 0.98459 0.92364 0.87555 0.86761 0.91011 0.91600 0.91118 0.92139 0.89585 0.86191 0.90653 0.90663 0.89585 0.90498 0.90353 0.89520 0.91072 0.91178 0.90726 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.30 10.24 127.77 1.31 3.60 16 2 N -0.61 -25.57 2.86 -851.13 -2.43 -28.00 16 3 C 0.26 13.97 5.16 85.63 0.44 14.42 16 4 C -0.54 -31.36 9.39 25.60 0.24 -31.12 16 5 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 6 C 0.01 0.38 5.46 84.66 0.46 0.84 16 7 N -0.93 -56.46 13.29 21.45 0.28 -56.17 16 8 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 9 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 12 C 0.50 19.87 7.67 87.66 0.67 20.54 16 13 O -0.60 -30.32 15.56 -3.03 -0.05 -30.37 16 14 C -0.15 -3.90 3.68 29.85 0.11 -3.79 16 15 C 0.08 2.09 4.32 86.31 0.37 2.46 16 16 N -0.52 -9.79 3.08 -911.57 -2.81 -12.60 16 17 C 0.04 0.66 3.81 84.43 0.32 0.98 16 18 C -0.05 -0.85 6.09 70.02 0.43 -0.42 16 19 S -0.30 -5.45 21.04 -56.49 -1.19 -6.64 16 20 C -0.03 -0.44 0.87 -9.98 -0.01 -0.45 16 21 C -0.12 -1.93 5.64 31.15 0.18 -1.75 16 22 C -0.13 -1.77 7.69 31.13 0.24 -1.53 16 23 C -0.11 -1.54 7.21 31.13 0.22 -1.31 16 24 C -0.08 -1.27 4.91 30.92 0.15 -1.11 16 25 C 0.04 0.69 4.46 86.55 0.39 1.08 16 26 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 27 H 0.06 1.99 8.07 -2.39 -0.02 1.97 16 28 H 0.09 1.97 6.44 -2.39 -0.02 1.96 16 29 H 0.02 1.19 8.07 -2.38 -0.02 1.17 16 30 H 0.00 -0.17 7.42 -2.39 -0.02 -0.19 16 31 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 32 H 0.11 2.29 6.52 -2.39 -0.02 2.28 16 33 H 0.11 2.30 6.37 -2.39 -0.02 2.28 16 34 H 0.07 2.01 8.10 -2.39 -0.02 1.99 16 35 H 0.07 1.90 7.85 -2.39 -0.02 1.88 16 36 H 0.07 1.28 7.23 -2.39 -0.02 1.26 16 37 H 0.06 0.99 6.79 -2.38 -0.02 0.97 16 38 H 0.09 1.46 7.16 -2.39 -0.02 1.44 16 39 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.07 1.30 7.70 -2.39 -0.02 1.28 16 41 H 0.07 1.47 7.32 -2.39 -0.02 1.45 16 42 H 0.09 1.09 7.50 -2.39 -0.02 1.08 16 43 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.08 0.98 8.08 -2.39 -0.02 0.96 16 45 H 0.09 1.26 8.08 -2.39 -0.02 1.24 16 46 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 47 H 0.07 1.09 7.05 -2.38 -0.02 1.08 16 48 H 0.07 1.23 6.42 -2.39 -0.02 1.22 16 49 H 0.07 1.06 6.77 -2.39 -0.02 1.04 16 Total: -1.00 -72.32 380.92 2.28 -70.04 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.92 Total: 14.42 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 5.52 Total: 2.42 kcal Atomic # 7 Polarization: -91.82 SS G_CDS: -4.95 Total: -96.77 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.05 Total: -30.37 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: -5.45 SS G_CDS: -1.19 Total: -6.64 kcal Total: -72.32 2.28 -70.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411869365.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.044 kcal (2) G-P(sol) polarization free energy of solvation -72.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds