Wall clock time and date at job start Tue Mar 31 2020 15:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33399 * 119.70736 * 2 1 4 4 C 1.31427 * 121.94028 * 180.02562 * 3 2 1 5 5 C 1.47732 * 119.42627 * 180.02562 * 4 3 2 6 6 C 1.40076 * 120.56024 * 359.97438 * 5 4 3 7 7 C 1.38334 * 118.28285 * 179.97438 * 6 5 4 8 8 C 1.38363 * 119.31364 * 0.02562 * 7 6 5 9 9 N 1.31927 * 121.08901 * 359.97438 * 8 7 6 10 10 C 1.31690 * 121.88698 * 359.72558 * 9 8 7 11 11 N 1.36676 * 121.15637 * 0.02876 * 4 3 2 12 12 H 0.96994 * 120.37354 * 180.02562 * 11 4 3 13 13 C 1.38108 * 119.25024 * 359.66838 * 11 4 3 14 14 N 1.31478 * 120.87952 * 180.32237 * 13 11 4 15 15 C 1.46503 * 119.99648 * 354.27217 * 14 13 11 16 16 C 1.53005 * 109.47214 * 114.59119 * 15 14 13 17 17 C 1.52992 * 109.46782 * 299.99628 * 16 15 14 18 18 C 1.52993 * 109.47350 * 59.99812 * 16 15 14 19 19 C 1.50704 * 109.46654 * 179.97438 * 16 15 14 20 20 H 1.07993 * 120.00188 * 359.97438 * 19 16 15 21 21 C 1.37878 * 119.99549 * 179.97438 * 19 16 15 22 22 N 1.31524 * 119.99857 * 359.97438 * 21 19 16 23 23 Si 1.86796 * 120.00131 * 180.02562 * 21 19 16 24 24 H 1.48498 * 109.46906 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47392 * 119.99837 * 23 21 19 26 26 H 1.48498 * 109.47104 * 240.00038 * 23 21 19 27 27 C 1.35833 * 119.70283 * 180.02562 * 2 1 3 28 28 C 1.50697 * 120.59339 * 359.97438 * 27 2 1 29 29 H 1.09001 * 109.47307 * 269.97639 * 1 2 3 30 30 H 1.08999 * 109.47513 * 29.97349 * 1 2 3 31 31 H 1.09001 * 109.47412 * 149.97598 * 1 2 3 32 32 H 1.07996 * 120.85455 * 359.96184 * 6 5 4 33 33 H 1.08003 * 120.34539 * 180.02562 * 7 6 5 34 34 H 1.07993 * 119.46139 * 179.97438 * 8 7 6 35 35 H 1.07997 * 119.72671 * 180.26245 * 10 9 8 36 36 H 1.09004 * 109.46633 * 234.58775 * 15 14 13 37 37 H 1.08994 * 109.47382 * 354.58396 * 15 14 13 38 38 H 1.09001 * 109.47207 * 60.00159 * 17 16 15 39 39 H 1.09000 * 109.46996 * 180.02562 * 17 16 15 40 40 H 1.09006 * 109.47527 * 300.00298 * 17 16 15 41 41 H 1.09004 * 109.47380 * 59.99804 * 18 16 15 42 42 H 1.09000 * 109.47143 * 180.02562 * 18 16 15 43 43 H 1.09001 * 109.46945 * 300.00029 * 18 16 15 44 44 H 0.97001 * 119.99135 * 179.97438 * 22 21 19 45 45 H 1.08998 * 109.47550 * 90.00105 * 28 27 2 46 46 H 1.09006 * 109.46977 * 210.00015 * 28 27 2 47 47 H 1.08993 * 109.47233 * 329.99781 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1681 1.1587 0.0000 4 6 3.4814 1.2099 -0.0005 5 6 4.1565 2.5239 0.0001 6 6 3.4091 3.7086 0.0007 7 6 4.0897 4.9129 0.0018 8 6 5.4733 4.9092 0.0017 9 7 6.1514 3.7775 0.0012 10 6 5.5499 2.6060 0.0060 11 7 4.2335 0.0687 -0.0016 12 1 5.2021 0.1197 -0.0016 13 6 3.5988 -1.1579 0.0047 14 7 4.2909 -2.2758 0.0102 15 6 5.7498 -2.2346 -0.1170 16 6 6.3891 -2.7439 1.1764 17 6 5.9538 -1.8564 2.3442 18 6 5.9401 -4.1834 1.4349 19 6 7.8898 -2.7021 1.0452 20 1 8.3423 -2.3482 0.1307 21 6 8.6851 -3.1157 2.0928 22 7 8.1340 -3.5462 3.2067 23 14 10.5453 -3.0634 1.9306 24 1 10.9107 -2.5424 0.5889 25 1 11.1087 -2.1738 2.9778 26 1 11.0954 -4.4328 2.0960 27 6 2.1801 -1.1799 -0.0005 28 6 1.4333 -2.4888 -0.0005 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5142 32 1 2.3295 3.6824 0.0000 33 1 3.5467 5.8465 0.0026 34 1 6.0070 5.8480 0.0022 35 1 6.1395 1.7013 0.0096 36 1 6.0599 -2.8669 -0.9490 37 1 6.0697 -1.2091 -0.3012 38 1 4.8684 -1.8870 2.4388 39 1 6.4096 -2.2189 3.2656 40 1 6.2737 -0.8307 2.1600 41 1 6.2502 -4.8157 0.6029 42 1 6.3952 -4.5460 2.3566 43 1 4.8547 -4.2140 1.5296 44 1 8.6936 -3.8376 3.9435 45 1 1.2529 -2.8042 -1.0282 46 1 2.0266 -3.2455 0.5129 47 1 0.4805 -2.3635 0.5137 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413403427.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:13 Heat of formation + Delta-G solvation = 93.691432 kcal Electronic energy + Delta-G solvation = -27888.540491 eV Core-core repulsion = 24264.780288 eV Total energy + Delta-G solvation = -3623.760203 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.18624 -39.97175 -36.88950 -35.39694 -34.70743 -32.72551 -31.74715 -31.49778 -30.21751 -29.16639 -26.77778 -25.57555 -25.33765 -24.81183 -24.06594 -23.68632 -21.76686 -20.87428 -18.70739 -18.45952 -17.40907 -16.98285 -16.29895 -16.11627 -15.93218 -15.36452 -14.71803 -14.54839 -14.15799 -14.04120 -13.71642 -13.40222 -13.30477 -13.05426 -12.94510 -12.69214 -12.56795 -12.35100 -12.22075 -12.04247 -11.55427 -11.42594 -11.17301 -11.00059 -10.74891 -10.62941 -10.29033 -10.25282 -10.13329 -9.92566 -9.84685 -9.76267 -9.51690 -9.46490 -9.01601 -8.91432 -8.50449 -8.31010 -6.97689 -5.94457 -4.06614 0.12540 0.95021 1.35161 2.29523 2.88011 3.28338 3.36867 3.39962 3.46412 3.71314 3.89094 4.16243 4.40457 4.50835 4.52658 4.64376 4.72133 4.84044 5.12528 5.23960 5.30476 5.32152 5.35921 5.52217 5.57139 5.71876 5.79787 5.85948 5.88397 5.95345 6.01005 6.14863 6.21973 6.27496 6.47920 6.58458 6.66414 6.78288 6.83202 7.09937 7.12629 7.21046 7.36831 7.47926 7.61650 7.70327 7.76206 8.03713 8.12047 8.27040 8.45836 8.59040 8.95218 9.59105 11.05435 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010020 B = 0.004371 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.807083 B = 6404.779012 C = 8805.518282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.122 3.878 3 N -0.541 5.541 4 C 0.436 3.564 5 C -0.113 4.113 6 C -0.015 4.015 7 C -0.180 4.180 8 C 0.115 3.885 9 N -0.479 5.479 10 C 0.131 3.869 11 N -0.655 5.655 12 H 0.416 0.584 13 C 0.374 3.626 14 N -0.546 5.546 15 C 0.064 3.936 16 C 0.074 3.926 17 C -0.125 4.125 18 C -0.119 4.119 19 C -0.511 4.511 20 H 0.053 0.947 21 C 0.067 3.933 22 N -0.883 5.883 23 Si 0.889 3.111 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.284 1.284 27 C -0.151 4.151 28 C -0.088 4.088 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.154 0.846 33 H 0.143 0.857 34 H 0.161 0.839 35 H 0.157 0.843 36 H 0.071 0.929 37 H 0.011 0.989 38 H 0.009 0.991 39 H 0.083 0.917 40 H 0.011 0.989 41 H 0.019 0.981 42 H 0.075 0.925 43 H 0.019 0.981 44 H 0.258 0.742 45 H 0.065 0.935 46 H 0.081 0.919 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.958 14.547 -6.442 21.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.004 3.996 3 N -0.264 5.264 4 C 0.171 3.829 5 C -0.118 4.118 6 C -0.043 4.043 7 C -0.199 4.199 8 C -0.042 4.042 9 N -0.187 5.187 10 C -0.029 4.029 11 N -0.287 5.287 12 H 0.258 0.742 13 C 0.105 3.895 14 N -0.270 5.270 15 C -0.065 4.065 16 C 0.073 3.927 17 C -0.183 4.183 18 C -0.176 4.176 19 C -0.549 4.549 20 H 0.071 0.929 21 C -0.135 4.135 22 N -0.521 5.521 23 Si 0.717 3.283 24 H -0.199 1.199 25 H -0.211 1.211 26 H -0.210 1.210 27 C -0.159 4.159 28 C -0.146 4.146 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.171 0.829 33 H 0.161 0.839 34 H 0.178 0.822 35 H 0.174 0.826 36 H 0.089 0.911 37 H 0.029 0.971 38 H 0.028 0.972 39 H 0.102 0.898 40 H 0.030 0.970 41 H 0.039 0.961 42 H 0.094 0.906 43 H 0.038 0.962 44 H 0.068 0.932 45 H 0.084 0.916 46 H 0.100 0.900 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.664 14.005 -6.220 20.531 hybrid contribution 1.655 0.053 -0.030 1.657 sum -12.008 14.058 -6.249 19.516 Atomic orbital electron populations 1.20637 0.88668 1.03168 1.02835 1.20360 0.96509 0.87067 0.95714 1.67859 1.04292 1.28979 1.25260 1.20574 0.87576 0.85576 0.89205 1.19313 0.94200 0.91088 1.07202 1.21780 1.01648 0.90222 0.90619 1.22193 0.95824 0.99074 1.02856 1.23050 0.91747 0.96745 0.92628 1.67757 1.40572 0.98114 1.12220 1.22940 0.90565 0.96647 0.92710 1.44377 1.11757 1.05745 1.66780 0.74201 1.20067 0.92915 0.80426 0.96081 1.73205 1.09822 1.20306 1.23674 1.22249 0.85333 0.97371 1.01579 1.18130 0.93490 0.92875 0.88189 1.21771 0.96144 0.97061 1.03337 1.21626 0.96883 0.97468 1.01649 1.21140 0.90432 1.43193 1.00158 0.92865 1.24892 0.98296 0.94983 0.95289 1.69857 1.34416 1.43506 1.04349 0.86589 0.86028 0.77651 0.78030 1.19872 1.21100 1.21041 1.20002 0.89854 0.97204 1.08816 1.20447 0.98570 0.93625 1.01934 0.90566 0.90845 0.90479 0.82866 0.83918 0.82157 0.82635 0.91086 0.97104 0.97233 0.89823 0.96968 0.96147 0.90586 0.96218 0.93172 0.91637 0.89996 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.92 9.35 36.01 0.34 -0.59 16 2 C 0.12 1.66 6.75 -82.77 -0.56 1.10 16 3 N -0.54 -7.54 9.38 -7.32 -0.07 -7.61 16 4 C 0.44 6.22 7.65 -154.53 -1.18 5.03 16 5 C -0.11 -1.38 5.89 -104.83 -0.62 -2.00 16 6 C -0.02 -0.15 9.69 -38.86 -0.38 -0.53 16 7 C -0.18 -1.40 10.10 -39.50 -0.40 -1.79 16 8 C 0.12 1.05 11.17 -17.46 -0.20 0.85 16 9 N -0.48 -5.93 10.35 -12.89 -0.13 -6.06 16 10 C 0.13 1.66 10.71 -17.11 -0.18 1.48 16 11 N -0.65 -10.52 5.26 -9.77 -0.05 -10.57 16 12 H 0.42 6.66 4.34 -40.82 -0.18 6.49 16 13 C 0.37 6.68 7.31 -155.60 -1.14 5.55 16 14 N -0.55 -11.07 8.21 -60.07 -0.49 -11.56 16 15 C 0.06 1.40 5.12 -4.04 -0.02 1.38 16 16 C 0.07 1.84 0.57 -155.66 -0.09 1.75 16 17 C -0.13 -3.11 8.09 37.15 0.30 -2.81 16 18 C -0.12 -3.01 8.09 37.15 0.30 -2.71 16 19 C -0.51 -13.77 8.01 -34.44 -0.28 -14.05 16 20 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 21 C 0.07 1.82 5.15 -17.82 -0.09 1.72 16 22 N -0.88 -24.71 9.35 55.43 0.52 -24.19 16 23 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 C -0.15 -2.33 5.93 -104.09 -0.62 -2.95 16 28 C -0.09 -1.16 8.99 36.00 0.32 -0.84 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.63 6.66 -51.93 -0.35 0.29 16 32 H 0.15 1.32 7.62 -52.49 -0.40 0.92 16 33 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 34 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.16 1.97 6.39 -52.49 -0.34 1.63 16 36 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 37 H 0.01 0.22 5.58 -51.93 -0.29 -0.07 16 38 H 0.01 0.21 7.45 -51.93 -0.39 -0.17 16 39 H 0.08 2.29 6.07 -51.93 -0.32 1.97 16 40 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.08 2.09 6.07 -51.93 -0.32 1.78 16 43 H 0.02 0.47 7.60 -51.93 -0.39 0.07 16 44 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.08 1.27 7.60 -51.93 -0.39 0.87 16 47 H 0.06 0.66 6.69 -51.93 -0.35 0.31 16 LS Contribution 375.07 15.07 5.65 5.65 Total: -1.00 -31.30 375.07 -10.70 -42.01 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -6.63 Total: 5.57 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -4.48 Total: -9.40 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: -0.23 Total: -59.99 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.30 -10.70 -42.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413403427.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.700 kcal (2) G-P(sol) polarization free energy of solvation -31.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds