Wall clock time and date at job start Tue Mar 31 2020 15:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33399 * 119.70736 * 2 1 4 4 C 1.31427 * 121.94028 * 180.02562 * 3 2 1 5 5 C 1.47732 * 119.42627 * 180.02562 * 4 3 2 6 6 C 1.40076 * 120.56024 * 359.97438 * 5 4 3 7 7 C 1.38334 * 118.28285 * 179.97438 * 6 5 4 8 8 C 1.38363 * 119.31364 * 0.02562 * 7 6 5 9 9 N 1.31927 * 121.08901 * 359.97438 * 8 7 6 10 10 C 1.31690 * 121.88698 * 359.72558 * 9 8 7 11 11 N 1.36676 * 121.15637 * 0.02876 * 4 3 2 12 12 H 0.96994 * 120.37354 * 180.02562 * 11 4 3 13 13 C 1.38108 * 119.25024 * 359.66838 * 11 4 3 14 14 N 1.31478 * 120.87952 * 180.32237 * 13 11 4 15 15 C 1.46503 * 119.99648 * 354.27217 * 14 13 11 16 16 C 1.53005 * 109.47214 * 114.59119 * 15 14 13 17 17 C 1.52992 * 109.46782 * 299.99628 * 16 15 14 18 18 C 1.52993 * 109.47350 * 59.99812 * 16 15 14 19 19 C 1.50704 * 109.46654 * 179.97438 * 16 15 14 20 20 H 1.07993 * 120.00188 * 359.97438 * 19 16 15 21 21 C 1.37878 * 119.99549 * 179.97438 * 19 16 15 22 22 N 1.31524 * 119.99857 * 359.97438 * 21 19 16 23 23 Si 1.86796 * 120.00131 * 180.02562 * 21 19 16 24 24 H 1.48498 * 109.46906 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47392 * 119.99837 * 23 21 19 26 26 H 1.48498 * 109.47104 * 240.00038 * 23 21 19 27 27 C 1.35833 * 119.70283 * 180.02562 * 2 1 3 28 28 C 1.50697 * 120.59339 * 359.97438 * 27 2 1 29 29 H 1.09001 * 109.47307 * 269.97639 * 1 2 3 30 30 H 1.08999 * 109.47513 * 29.97349 * 1 2 3 31 31 H 1.09001 * 109.47412 * 149.97598 * 1 2 3 32 32 H 1.07996 * 120.85455 * 359.96184 * 6 5 4 33 33 H 1.08003 * 120.34539 * 180.02562 * 7 6 5 34 34 H 1.07993 * 119.46139 * 179.97438 * 8 7 6 35 35 H 1.07997 * 119.72671 * 180.26245 * 10 9 8 36 36 H 1.09004 * 109.46633 * 234.58775 * 15 14 13 37 37 H 1.08994 * 109.47382 * 354.58396 * 15 14 13 38 38 H 1.09001 * 109.47207 * 60.00159 * 17 16 15 39 39 H 1.09000 * 109.46996 * 180.02562 * 17 16 15 40 40 H 1.09006 * 109.47527 * 300.00298 * 17 16 15 41 41 H 1.09004 * 109.47380 * 59.99804 * 18 16 15 42 42 H 1.09000 * 109.47143 * 180.02562 * 18 16 15 43 43 H 1.09001 * 109.46945 * 300.00029 * 18 16 15 44 44 H 0.97001 * 119.99135 * 179.97438 * 22 21 19 45 45 H 1.08998 * 109.47550 * 90.00105 * 28 27 2 46 46 H 1.09006 * 109.46977 * 210.00015 * 28 27 2 47 47 H 1.08993 * 109.47233 * 329.99781 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1681 1.1587 0.0000 4 6 3.4814 1.2099 -0.0005 5 6 4.1565 2.5239 0.0001 6 6 3.4091 3.7086 0.0007 7 6 4.0897 4.9129 0.0018 8 6 5.4733 4.9092 0.0017 9 7 6.1514 3.7775 0.0012 10 6 5.5499 2.6060 0.0060 11 7 4.2335 0.0687 -0.0016 12 1 5.2021 0.1197 -0.0016 13 6 3.5988 -1.1579 0.0047 14 7 4.2909 -2.2758 0.0102 15 6 5.7498 -2.2346 -0.1170 16 6 6.3891 -2.7439 1.1764 17 6 5.9538 -1.8564 2.3442 18 6 5.9401 -4.1834 1.4349 19 6 7.8898 -2.7021 1.0452 20 1 8.3423 -2.3482 0.1307 21 6 8.6851 -3.1157 2.0928 22 7 8.1340 -3.5462 3.2067 23 14 10.5453 -3.0634 1.9306 24 1 10.9107 -2.5424 0.5889 25 1 11.1087 -2.1738 2.9778 26 1 11.0954 -4.4328 2.0960 27 6 2.1801 -1.1799 -0.0005 28 6 1.4333 -2.4888 -0.0005 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5142 32 1 2.3295 3.6824 0.0000 33 1 3.5467 5.8465 0.0026 34 1 6.0070 5.8480 0.0022 35 1 6.1395 1.7013 0.0096 36 1 6.0599 -2.8669 -0.9490 37 1 6.0697 -1.2091 -0.3012 38 1 4.8684 -1.8870 2.4388 39 1 6.4096 -2.2189 3.2656 40 1 6.2737 -0.8307 2.1600 41 1 6.2502 -4.8157 0.6029 42 1 6.3952 -4.5460 2.3566 43 1 4.8547 -4.2140 1.5296 44 1 8.6936 -3.8376 3.9435 45 1 1.2529 -2.8042 -1.0282 46 1 2.0266 -3.2455 0.5129 47 1 0.4805 -2.3635 0.5137 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413403427.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:12 Heat of formation + Delta-G solvation = 76.748729 kcal Electronic energy + Delta-G solvation = -27889.275182 eV Core-core repulsion = 24264.780288 eV Total energy + Delta-G solvation = -3624.494894 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.31427 -40.87994 -38.55268 -36.59138 -36.16592 -33.81246 -33.33104 -32.37851 -31.70680 -30.17915 -28.01025 -27.60497 -27.31385 -26.28641 -25.04003 -24.63500 -22.81049 -22.19037 -20.46543 -19.60254 -18.66623 -18.01827 -17.83774 -17.24161 -16.96913 -16.84414 -16.42729 -15.86023 -15.21434 -14.99082 -14.95331 -14.79962 -14.58701 -14.24647 -14.08030 -14.06625 -13.69590 -13.59251 -13.36319 -13.28341 -13.07248 -13.00693 -12.74964 -12.55686 -12.40649 -12.37274 -12.27246 -12.15184 -11.51818 -11.38523 -11.15161 -11.02474 -10.79885 -10.68595 -10.60741 -10.44174 -10.18170 -10.09773 -8.31258 -8.00770 -6.21724 -0.84573 0.16192 0.33999 1.06151 1.38033 1.40893 1.50915 1.65622 2.41356 2.50448 2.69218 2.84307 3.18955 3.32676 3.38198 3.60813 3.76302 3.91367 4.02199 4.09892 4.24504 4.39510 4.41182 4.47637 4.58905 4.60612 4.68437 4.81737 4.83607 4.86580 4.91652 4.96017 5.05734 5.06252 5.09045 5.10872 5.19781 5.25408 5.32265 5.41276 5.48669 5.58844 5.59195 5.62202 5.66241 5.92416 6.04954 6.20919 6.40785 6.81550 6.84161 6.87885 7.15592 7.46791 8.95735 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010020 B = 0.004371 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.807083 B = 6404.779012 C = 8805.518282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.138 3.862 3 N -0.539 5.539 4 C 0.434 3.566 5 C -0.131 4.131 6 C -0.014 4.014 7 C -0.160 4.160 8 C 0.114 3.886 9 N -0.509 5.509 10 C 0.115 3.885 11 N -0.658 5.658 12 H 0.413 0.587 13 C 0.380 3.620 14 N -0.587 5.587 15 C 0.079 3.921 16 C 0.066 3.934 17 C -0.104 4.104 18 C -0.103 4.103 19 C -0.527 4.527 20 H 0.049 0.951 21 C 0.023 3.977 22 N -0.905 5.905 23 Si 0.949 3.051 24 H -0.270 1.270 25 H -0.281 1.281 26 H -0.282 1.282 27 C -0.191 4.191 28 C -0.079 4.079 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.168 0.832 33 H 0.187 0.813 34 H 0.195 0.805 35 H 0.141 0.859 36 H 0.055 0.945 37 H 0.016 0.984 38 H 0.009 0.991 39 H 0.056 0.944 40 H 0.013 0.987 41 H 0.013 0.987 42 H 0.052 0.948 43 H 0.023 0.977 44 H 0.258 0.742 45 H 0.073 0.927 46 H 0.052 0.948 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.811 17.624 -7.001 24.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.019 3.981 3 N -0.262 5.262 4 C 0.170 3.830 5 C -0.136 4.136 6 C -0.041 4.041 7 C -0.179 4.179 8 C -0.042 4.042 9 N -0.218 5.218 10 C -0.044 4.044 11 N -0.288 5.288 12 H 0.254 0.746 13 C 0.113 3.887 14 N -0.314 5.314 15 C -0.051 4.051 16 C 0.066 3.934 17 C -0.161 4.161 18 C -0.161 4.161 19 C -0.566 4.566 20 H 0.067 0.933 21 C -0.176 4.176 22 N -0.544 5.544 23 Si 0.775 3.225 24 H -0.194 1.194 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.199 4.199 28 C -0.137 4.137 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.185 0.815 33 H 0.204 0.796 34 H 0.211 0.789 35 H 0.158 0.842 36 H 0.074 0.926 37 H 0.034 0.966 38 H 0.028 0.972 39 H 0.075 0.925 40 H 0.032 0.968 41 H 0.033 0.967 42 H 0.070 0.930 43 H 0.042 0.958 44 H 0.068 0.932 45 H 0.092 0.908 46 H 0.071 0.929 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.526 17.116 -6.787 24.085 hybrid contribution 2.118 -0.627 0.134 2.213 sum -13.408 16.489 -6.653 22.269 Atomic orbital electron populations 1.20797 0.85292 1.04809 1.04233 1.21064 0.98596 0.86186 0.92249 1.68011 1.03844 1.29021 1.25299 1.21116 0.87859 0.85814 0.88192 1.19308 0.94077 0.90982 1.09192 1.22050 1.02311 0.89903 0.89805 1.22625 0.95316 0.99940 1.00042 1.23722 0.92852 0.96796 0.90878 1.67748 1.41742 0.98845 1.13433 1.22788 0.90879 0.96730 0.94038 1.44490 1.11875 1.06163 1.66261 0.74567 1.20589 0.94125 0.80380 0.93626 1.73213 1.08101 1.21536 1.28560 1.21856 0.87060 0.97048 0.99181 1.18147 0.92932 0.92504 0.89862 1.21505 0.95715 0.96901 1.02023 1.21442 0.96789 0.97909 0.99991 1.21418 0.91796 1.43300 1.00081 0.93283 1.25587 1.02293 0.94718 0.95028 1.69992 1.35681 1.43899 1.04804 0.85646 0.81172 0.77577 0.78070 1.19397 1.20733 1.20801 1.20265 0.88725 0.98962 1.11927 1.20400 0.99022 0.91784 1.02453 0.89003 0.89395 0.88707 0.81462 0.79604 0.78864 0.84169 0.92630 0.96614 0.97170 0.92502 0.96824 0.96741 0.92960 0.95817 0.93214 0.90846 0.92927 0.89004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.47 9.35 71.24 0.67 -0.81 16 2 C 0.14 3.49 6.75 41.76 0.28 3.78 16 3 N -0.54 -14.04 9.38 -177.06 -1.66 -15.70 16 4 C 0.43 12.16 7.65 136.43 1.04 13.20 16 5 C -0.13 -3.08 5.89 -20.00 -0.12 -3.19 16 6 C -0.01 -0.23 9.69 22.74 0.22 -0.01 16 7 C -0.16 -1.84 10.10 22.32 0.23 -1.61 16 8 C 0.11 1.73 11.17 84.71 0.95 2.68 16 9 N -0.51 -12.17 10.35 -194.71 -2.01 -14.18 16 10 C 0.11 2.95 10.71 85.04 0.91 3.86 16 11 N -0.66 -21.65 5.26 -184.81 -0.97 -22.62 16 12 H 0.41 13.94 4.34 -92.71 -0.40 13.54 16 13 C 0.38 13.87 7.31 134.33 0.98 14.85 16 14 N -0.59 -24.78 8.21 -343.95 -2.83 -27.61 16 15 C 0.08 3.60 5.12 86.38 0.44 4.04 16 16 C 0.07 3.43 0.57 -52.93 -0.03 3.40 16 17 C -0.10 -5.34 8.09 71.98 0.58 -4.75 16 18 C -0.10 -5.49 8.09 71.98 0.58 -4.91 16 19 C -0.53 -29.31 8.01 25.60 0.21 -29.11 16 20 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 21 C 0.02 1.27 5.15 84.65 0.44 1.71 16 22 N -0.90 -52.05 9.35 21.45 0.20 -51.85 16 23 Si 0.95 44.18 29.54 68.60 2.03 46.21 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 25 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 26 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 27 C -0.19 -5.77 5.93 -19.52 -0.12 -5.89 16 28 C -0.08 -2.03 8.99 71.23 0.64 -1.39 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.09 1.19 6.66 -2.39 -0.02 1.18 16 32 H 0.17 2.28 7.62 -2.91 -0.02 2.25 16 33 H 0.19 0.56 8.06 -2.91 -0.02 0.54 16 34 H 0.19 1.52 8.06 -2.91 -0.02 1.50 16 35 H 0.14 3.84 6.39 -2.91 -0.02 3.82 16 36 H 0.06 2.62 8.14 -2.38 -0.02 2.60 16 37 H 0.02 0.68 5.58 -2.39 -0.01 0.66 16 38 H 0.01 0.47 7.45 -2.39 -0.02 0.46 16 39 H 0.06 3.22 6.07 -2.39 -0.01 3.21 16 40 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 41 H 0.01 0.72 8.14 -2.38 -0.02 0.70 16 42 H 0.05 2.99 6.07 -2.39 -0.01 2.98 16 43 H 0.02 1.18 7.60 -2.39 -0.02 1.16 16 44 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 45 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.05 1.66 7.60 -2.38 -0.02 1.64 16 47 H 0.09 1.73 6.69 -2.39 -0.02 1.71 16 Total: -1.00 -70.36 375.07 3.25 -67.11 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.59 Total: 22.79 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 7.90 Total: -4.15 kcal Atomic # 7 Polarization: -124.68 SS G_CDS: -7.27 Total: -131.95 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -70.36 3.25 -67.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413403427.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.859 kcal (2) G-P(sol) polarization free energy of solvation -70.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds