Wall clock time and date at job start Tue Mar 31 2020 15:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47202 * 2 1 4 4 C 1.34857 * 120.35541 * 275.30243 * 3 2 1 5 5 C 1.46904 * 118.32195 * 180.30067 * 4 3 2 6 6 N 1.31941 * 120.56732 * 179.68746 * 5 4 3 7 7 C 1.46499 * 119.99757 * 179.72619 * 6 5 4 8 8 C 1.53000 * 109.46840 * 120.00471 * 7 6 5 9 9 C 1.53002 * 109.47233 * 299.99500 * 8 7 6 10 10 C 1.52996 * 109.47328 * 59.99969 * 8 7 6 11 11 C 1.50706 * 109.46735 * 180.02562 * 8 7 6 12 12 H 1.07996 * 119.99928 * 359.97438 * 11 8 7 13 13 C 1.37880 * 119.99611 * 179.97438 * 11 8 7 14 14 N 1.31511 * 120.00327 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99743 * 179.97438 * 13 11 8 16 16 H 1.48506 * 109.46828 * 90.00241 * 15 13 11 17 17 H 1.48494 * 109.47178 * 209.99936 * 15 13 11 18 18 H 1.48500 * 109.47075 * 330.00183 * 15 13 11 19 19 N 1.35088 * 118.86404 * 359.42221 * 5 4 3 20 20 C 1.31138 * 120.54989 * 0.27063 * 19 5 4 21 21 C 1.48060 * 119.07588 * 179.97438 * 20 19 5 22 22 C 1.39868 * 120.92490 * 179.72428 * 21 20 19 23 23 C 1.38081 * 119.00127 * 179.70691 * 22 21 20 24 24 N 1.31848 * 120.89638 * 0.57626 * 23 22 21 25 25 C 1.31850 * 122.05262 * 359.71561 * 24 23 22 26 26 C 1.38084 * 120.89715 * 359.97438 * 25 24 23 27 27 N 1.36163 * 121.84944 * 359.97438 * 20 19 5 28 28 H 0.96995 * 119.43909 * 180.02562 * 27 20 19 29 29 H 1.09006 * 109.47154 * 59.99994 * 1 2 3 30 30 H 1.09002 * 109.47213 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47162 * 300.00080 * 1 2 3 32 32 H 1.09002 * 109.47162 * 239.99920 * 2 1 3 33 33 H 1.09000 * 109.46895 * 119.99664 * 2 1 3 34 34 H 1.08008 * 120.84095 * 0.02562 * 4 3 2 35 35 H 1.09002 * 109.47391 * 0.02562 * 7 6 5 36 36 H 1.09001 * 109.46813 * 240.00197 * 7 6 5 37 37 H 1.09000 * 109.46986 * 60.00203 * 9 8 7 38 38 H 1.08993 * 109.47662 * 180.02562 * 9 8 7 39 39 H 1.09002 * 109.47075 * 300.00932 * 9 8 7 40 40 H 1.08992 * 109.47554 * 59.99639 * 10 8 7 41 41 H 1.09004 * 109.47108 * 179.97438 * 10 8 7 42 42 H 1.09000 * 109.46870 * 299.99783 * 10 8 7 43 43 H 0.97000 * 120.00354 * 180.02562 * 14 13 11 44 44 H 1.08003 * 120.49356 * 359.96421 * 22 21 20 45 45 H 1.08000 * 119.55242 * 180.28811 * 23 22 21 46 46 H 1.07998 * 119.55333 * 179.97438 * 25 24 23 47 47 H 1.07996 * 120.50419 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1581 2.0992 -1.1587 5 6 2.6584 3.4795 -1.1074 6 7 2.8046 4.1818 -2.2148 7 6 3.2989 5.5593 -2.1487 8 6 4.5957 5.6749 -2.9523 9 6 5.6449 4.7279 -2.3663 10 6 4.3271 5.2989 -4.4108 11 6 5.1045 7.0918 -2.8837 12 1 4.5573 7.8355 -2.3234 13 6 6.2685 7.4386 -3.5363 14 7 6.9350 6.5329 -4.2182 15 14 6.8987 9.1951 -3.4519 16 1 7.8037 9.3406 -2.2834 17 1 7.6425 9.5144 -4.6968 18 1 5.7510 10.1264 -3.3082 19 7 2.9611 4.0192 0.0934 20 6 2.8158 3.3209 1.1938 21 6 3.1579 3.9446 2.4923 22 6 3.0123 3.2372 3.6900 23 6 3.3490 3.8554 4.8779 24 7 3.7910 5.0975 4.8931 25 6 3.9375 5.8017 3.7880 26 6 3.6304 5.2594 2.5558 27 7 2.3591 2.0382 1.1757 28 1 2.2646 1.5540 2.0108 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.9018 1.6379 -2.1011 35 1 3.4906 5.8271 -1.1096 36 1 2.5514 6.2339 -2.5661 37 1 5.2772 3.7030 -2.4155 38 1 6.5689 4.8106 -2.9385 39 1 5.8362 4.9958 -1.3272 40 1 3.5797 5.9734 -4.8282 41 1 5.2510 5.3817 -4.9834 42 1 3.9594 4.2740 -4.4600 43 1 7.7540 6.7768 -4.6770 44 1 2.6459 2.2212 3.6854 45 1 3.2444 3.3159 5.8076 46 1 4.3025 6.8164 3.8474 47 1 3.7532 5.8418 1.6546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413409012.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:28 Heat of formation + Delta-G solvation = 94.215533 kcal Electronic energy + Delta-G solvation = -27447.905051 eV Core-core repulsion = 23824.167574 eV Total energy + Delta-G solvation = -3623.737477 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.09007 -39.86304 -36.67024 -35.43603 -34.56040 -32.57068 -32.02949 -31.35986 -30.55111 -29.51160 -25.61293 -25.40862 -25.25793 -24.96987 -23.83777 -23.61989 -21.74714 -20.76537 -18.74603 -18.51774 -17.35989 -17.01897 -16.08064 -15.89646 -15.77103 -15.28225 -14.95154 -14.58021 -14.48423 -14.12766 -14.00046 -13.86561 -13.78445 -13.22567 -12.90116 -12.84438 -12.40704 -12.02538 -11.94630 -11.88703 -11.52282 -11.44760 -11.05260 -10.95084 -10.74738 -10.57108 -10.49643 -10.05964 -9.99700 -9.82836 -9.81342 -9.46818 -9.36142 -9.26712 -9.06903 -8.71778 -8.23425 -8.13373 -7.01871 -5.80290 -3.90719 0.33247 0.87861 1.57772 1.92668 2.64488 3.37340 3.43732 3.47332 3.56044 3.80236 4.15108 4.16054 4.20177 4.46454 4.53501 4.61127 4.65739 4.85305 4.89228 4.93982 5.08534 5.27000 5.35904 5.42272 5.44151 5.45557 5.55439 5.60714 5.71077 5.82911 5.89294 6.06035 6.30238 6.39530 6.62094 6.76035 6.83876 6.93678 7.05069 7.18358 7.30652 7.37809 7.54476 7.66806 7.68521 7.88931 7.90863 8.22432 8.32202 8.45149 8.63302 8.77348 9.11165 9.73144 11.19869 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010161 B = 0.003963 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.058389 B = 7063.474635 C = 9410.944534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.079 4.079 3 C 0.118 3.882 4 C -0.175 4.175 5 C 0.305 3.695 6 N -0.490 5.490 7 C 0.056 3.944 8 C 0.079 3.921 9 C -0.119 4.119 10 C -0.121 4.121 11 C -0.502 4.502 12 H 0.052 0.948 13 C 0.064 3.936 14 N -0.886 5.886 15 Si 0.888 3.112 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.275 1.275 19 N -0.519 5.519 20 C 0.424 3.576 21 C -0.009 4.009 22 C -0.159 4.159 23 C 0.098 3.902 24 N -0.476 5.476 25 C 0.102 3.898 26 C -0.109 4.109 27 N -0.641 5.641 28 H 0.407 0.593 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.146 0.854 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.005 0.995 38 H 0.077 0.923 39 H 0.016 0.984 40 H 0.017 0.983 41 H 0.074 0.926 42 H 0.017 0.983 43 H 0.257 0.743 44 H 0.133 0.867 45 H 0.160 0.840 46 H 0.165 0.835 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.270 -14.430 17.212 25.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.117 4.117 3 C 0.013 3.987 4 C -0.205 4.205 5 C 0.028 3.972 6 N -0.207 5.207 7 C -0.073 4.073 8 C 0.078 3.922 9 C -0.177 4.177 10 C -0.178 4.178 11 C -0.541 4.541 12 H 0.070 0.930 13 C -0.136 4.136 14 N -0.525 5.525 15 Si 0.716 3.284 16 H -0.209 1.209 17 H -0.214 1.214 18 H -0.200 1.200 19 N -0.243 5.243 20 C 0.149 3.851 21 C -0.019 4.019 22 C -0.181 4.181 23 C -0.059 4.059 24 N -0.186 5.186 25 C -0.055 4.055 26 C -0.131 4.131 27 N -0.264 5.264 28 H 0.243 0.757 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.164 0.836 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.024 0.976 38 H 0.096 0.904 39 H 0.035 0.965 40 H 0.036 0.964 41 H 0.093 0.907 42 H 0.036 0.964 43 H 0.067 0.933 44 H 0.151 0.849 45 H 0.177 0.823 46 H 0.183 0.817 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.701 -13.103 16.403 23.564 hybrid contribution 0.106 -0.072 0.168 0.211 sum -10.595 -13.175 16.570 23.673 Atomic orbital electron populations 1.21792 0.93746 1.02296 1.02841 1.20613 0.96862 0.89956 1.04262 1.20132 0.98506 0.94889 0.85130 1.21963 1.06979 0.94295 0.97238 1.20998 0.97219 0.92345 0.86674 1.73275 1.14458 1.10152 1.22855 1.22312 0.98250 0.86457 1.00326 1.18053 0.88204 0.94461 0.91488 1.21681 1.02343 0.95161 0.98465 1.21665 1.00714 0.96309 0.99161 1.21135 1.07650 0.94372 1.30914 0.92973 1.24889 0.96656 0.96788 0.95295 1.69855 1.16704 1.32611 1.33357 0.86663 0.78882 0.85548 0.77270 1.20878 1.21364 1.20035 1.69308 1.22668 1.34249 0.98035 1.20423 0.90323 0.81024 0.93288 1.18629 0.99152 0.94705 0.89435 1.22109 1.02188 1.00918 0.92862 1.22639 0.94800 0.91087 0.97385 1.67595 1.11521 1.07437 1.32027 1.22898 0.95362 1.00150 0.87069 1.22518 0.95378 0.94347 1.00840 1.41935 1.62447 1.12957 1.09102 0.75695 0.91678 0.91725 0.92621 0.88727 0.90554 0.83607 0.93326 0.92231 0.97643 0.90386 0.96516 0.96366 0.90699 0.96377 0.93318 0.84926 0.82269 0.81746 0.82421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.89 37.16 0.37 -0.50 16 2 C -0.08 -0.50 6.17 -27.88 -0.17 -0.67 16 3 C 0.12 1.25 6.10 -81.59 -0.50 0.75 16 4 C -0.17 -2.57 9.95 -37.28 -0.37 -2.94 16 5 C 0.31 5.89 7.60 -155.93 -1.19 4.71 16 6 N -0.49 -11.11 9.09 -59.19 -0.54 -11.64 16 7 C 0.06 1.38 5.18 -4.04 -0.02 1.36 16 8 C 0.08 2.13 0.57 -155.66 -0.09 2.04 16 9 C -0.12 -3.21 8.09 37.16 0.30 -2.91 16 10 C -0.12 -3.27 8.09 37.16 0.30 -2.97 16 11 C -0.50 -14.42 8.01 -34.44 -0.28 -14.70 16 12 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 13 C 0.06 1.83 5.15 -17.82 -0.09 1.74 16 14 N -0.89 -25.89 9.35 55.43 0.52 -25.37 16 15 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 16 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 N -0.52 -9.29 7.94 -9.02 -0.07 -9.36 16 20 C 0.42 5.68 7.64 -155.10 -1.18 4.50 16 21 C -0.01 -0.10 5.91 -104.65 -0.62 -0.72 16 22 C -0.16 -1.26 9.59 -39.03 -0.37 -1.64 16 23 C 0.10 0.81 11.17 -17.60 -0.20 0.62 16 24 N -0.48 -5.17 10.34 -13.32 -0.14 -5.31 16 25 C 0.10 1.11 11.17 -17.60 -0.20 0.91 16 26 C -0.11 -1.34 9.64 -39.03 -0.38 -1.72 16 27 N -0.64 -6.31 5.27 -6.95 -0.04 -6.35 16 28 H 0.41 2.40 6.71 -40.82 -0.27 2.13 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.57 8.12 -51.93 -0.42 0.15 16 33 H 0.08 0.33 8.13 -51.93 -0.42 -0.09 16 34 H 0.15 1.99 8.06 -52.48 -0.42 1.57 16 35 H 0.05 1.19 6.70 -51.93 -0.35 0.85 16 36 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.00 0.12 7.60 -51.93 -0.39 -0.27 16 38 H 0.08 2.26 6.07 -51.93 -0.32 1.95 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.07 2.16 6.07 -51.93 -0.32 1.85 16 42 H 0.02 0.45 7.60 -51.93 -0.39 0.06 16 43 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.13 0.56 6.45 -52.48 -0.34 0.22 16 45 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 46 H 0.17 1.45 8.06 -52.49 -0.42 1.03 16 47 H 0.16 2.23 7.61 -52.49 -0.40 1.83 16 LS Contribution 382.94 15.07 5.77 5.77 Total: -1.00 -35.35 382.94 -11.17 -46.52 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.97 Total: 0.96 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -4.68 Total: -12.15 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: -0.27 Total: -58.04 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.35 -11.17 -46.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413409012.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.734 kcal (2) G-P(sol) polarization free energy of solvation -35.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds