Wall clock time and date at job start Tue Mar 31 2020 15:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47202 * 2 1 4 4 C 1.34857 * 120.35541 * 275.30243 * 3 2 1 5 5 C 1.46904 * 118.32195 * 180.30067 * 4 3 2 6 6 N 1.31941 * 120.56732 * 179.68746 * 5 4 3 7 7 C 1.46499 * 119.99757 * 179.72619 * 6 5 4 8 8 C 1.53000 * 109.46840 * 120.00471 * 7 6 5 9 9 C 1.53002 * 109.47233 * 299.99500 * 8 7 6 10 10 C 1.52996 * 109.47328 * 59.99969 * 8 7 6 11 11 C 1.50706 * 109.46735 * 180.02562 * 8 7 6 12 12 H 1.07996 * 119.99928 * 359.97438 * 11 8 7 13 13 C 1.37880 * 119.99611 * 179.97438 * 11 8 7 14 14 N 1.31511 * 120.00327 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99743 * 179.97438 * 13 11 8 16 16 H 1.48506 * 109.46828 * 90.00241 * 15 13 11 17 17 H 1.48494 * 109.47178 * 209.99936 * 15 13 11 18 18 H 1.48500 * 109.47075 * 330.00183 * 15 13 11 19 19 N 1.35088 * 118.86404 * 359.42221 * 5 4 3 20 20 C 1.31138 * 120.54989 * 0.27063 * 19 5 4 21 21 C 1.48060 * 119.07588 * 179.97438 * 20 19 5 22 22 C 1.39868 * 120.92490 * 179.72428 * 21 20 19 23 23 C 1.38081 * 119.00127 * 179.70691 * 22 21 20 24 24 N 1.31848 * 120.89638 * 0.57626 * 23 22 21 25 25 C 1.31850 * 122.05262 * 359.71561 * 24 23 22 26 26 C 1.38084 * 120.89715 * 359.97438 * 25 24 23 27 27 N 1.36163 * 121.84944 * 359.97438 * 20 19 5 28 28 H 0.96995 * 119.43909 * 180.02562 * 27 20 19 29 29 H 1.09006 * 109.47154 * 59.99994 * 1 2 3 30 30 H 1.09002 * 109.47213 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47162 * 300.00080 * 1 2 3 32 32 H 1.09002 * 109.47162 * 239.99920 * 2 1 3 33 33 H 1.09000 * 109.46895 * 119.99664 * 2 1 3 34 34 H 1.08008 * 120.84095 * 0.02562 * 4 3 2 35 35 H 1.09002 * 109.47391 * 0.02562 * 7 6 5 36 36 H 1.09001 * 109.46813 * 240.00197 * 7 6 5 37 37 H 1.09000 * 109.46986 * 60.00203 * 9 8 7 38 38 H 1.08993 * 109.47662 * 180.02562 * 9 8 7 39 39 H 1.09002 * 109.47075 * 300.00932 * 9 8 7 40 40 H 1.08992 * 109.47554 * 59.99639 * 10 8 7 41 41 H 1.09004 * 109.47108 * 179.97438 * 10 8 7 42 42 H 1.09000 * 109.46870 * 299.99783 * 10 8 7 43 43 H 0.97000 * 120.00354 * 180.02562 * 14 13 11 44 44 H 1.08003 * 120.49356 * 359.96421 * 22 21 20 45 45 H 1.08000 * 119.55242 * 180.28811 * 23 22 21 46 46 H 1.07998 * 119.55333 * 179.97438 * 25 24 23 47 47 H 1.07996 * 120.50419 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1581 2.0992 -1.1587 5 6 2.6584 3.4795 -1.1074 6 7 2.8046 4.1818 -2.2148 7 6 3.2989 5.5593 -2.1487 8 6 4.5957 5.6749 -2.9523 9 6 5.6449 4.7279 -2.3663 10 6 4.3271 5.2989 -4.4108 11 6 5.1045 7.0918 -2.8837 12 1 4.5573 7.8355 -2.3234 13 6 6.2685 7.4386 -3.5363 14 7 6.9350 6.5329 -4.2182 15 14 6.8987 9.1951 -3.4519 16 1 7.8037 9.3406 -2.2834 17 1 7.6425 9.5144 -4.6968 18 1 5.7510 10.1264 -3.3082 19 7 2.9611 4.0192 0.0934 20 6 2.8158 3.3209 1.1938 21 6 3.1579 3.9446 2.4923 22 6 3.0123 3.2372 3.6900 23 6 3.3490 3.8554 4.8779 24 7 3.7910 5.0975 4.8931 25 6 3.9375 5.8017 3.7880 26 6 3.6304 5.2594 2.5558 27 7 2.3591 2.0382 1.1757 28 1 2.2646 1.5540 2.0108 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.9018 1.6379 -2.1011 35 1 3.4906 5.8271 -1.1096 36 1 2.5514 6.2339 -2.5661 37 1 5.2772 3.7030 -2.4155 38 1 6.5689 4.8106 -2.9385 39 1 5.8362 4.9958 -1.3272 40 1 3.5797 5.9734 -4.8282 41 1 5.2510 5.3817 -4.9834 42 1 3.9594 4.2740 -4.4600 43 1 7.7540 6.7768 -4.6770 44 1 2.6459 2.2212 3.6854 45 1 3.2444 3.3159 5.8076 46 1 4.3025 6.8164 3.8474 47 1 3.7532 5.8418 1.6546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413409012.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:28 Heat of formation + Delta-G solvation = 72.221750 kcal Electronic energy + Delta-G solvation = -27448.858773 eV Core-core repulsion = 23824.167574 eV Total energy + Delta-G solvation = -3624.691199 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.14345 -40.75506 -38.42626 -36.60879 -35.89955 -33.75226 -33.32083 -32.43196 -31.85367 -30.72683 -27.61019 -27.35456 -26.81209 -26.35771 -24.90002 -24.39495 -22.71861 -21.97777 -20.37106 -19.74315 -18.42534 -18.16577 -17.91525 -16.91920 -16.72737 -16.69810 -16.32793 -16.15039 -15.42594 -15.15370 -14.92239 -14.85800 -14.70986 -14.62039 -14.31337 -14.23505 -13.82366 -13.59517 -13.35828 -13.14252 -12.79564 -12.72345 -12.56131 -12.48961 -12.40589 -12.17587 -12.12797 -11.93497 -11.67449 -11.41850 -11.18256 -11.00420 -10.78618 -10.62483 -10.40130 -10.33034 -10.19985 -9.85521 -8.42899 -7.97780 -6.17614 -0.63675 0.10530 0.47577 0.85901 1.39762 1.40522 1.51271 1.62920 2.44111 2.67087 2.78846 2.96079 3.21274 3.28196 3.50574 3.63777 3.89282 3.89549 4.03512 4.15980 4.22199 4.28721 4.39028 4.52989 4.60227 4.70718 4.75028 4.78056 4.79958 4.80967 4.89206 5.01906 5.08976 5.09566 5.11229 5.16599 5.16977 5.24253 5.39537 5.41226 5.46643 5.60878 5.62853 5.63142 5.66927 6.11782 6.20041 6.24513 6.47081 6.87508 6.90888 7.06027 7.29535 7.49559 8.99934 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010161 B = 0.003963 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.058389 B = 7063.474635 C = 9410.944534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.075 4.075 3 C 0.166 3.834 4 C -0.228 4.228 5 C 0.323 3.677 6 N -0.563 5.563 7 C 0.081 3.919 8 C 0.069 3.931 9 C -0.091 4.091 10 C -0.103 4.103 11 C -0.527 4.527 12 H 0.043 0.957 13 C 0.020 3.980 14 N -0.907 5.907 15 Si 0.953 3.047 16 H -0.275 1.275 17 H -0.280 1.280 18 H -0.272 1.272 19 N -0.579 5.579 20 C 0.441 3.559 21 C -0.031 4.031 22 C -0.132 4.132 23 C 0.101 3.899 24 N -0.491 5.491 25 C 0.095 3.905 26 C -0.130 4.130 27 N -0.614 5.614 28 H 0.433 0.567 29 H 0.046 0.954 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.115 0.885 34 H 0.150 0.850 35 H 0.033 0.967 36 H 0.033 0.967 37 H 0.006 0.994 38 H 0.055 0.945 39 H 0.004 0.996 40 H 0.010 0.990 41 H 0.054 0.946 42 H 0.021 0.979 43 H 0.259 0.741 44 H 0.182 0.818 45 H 0.203 0.797 46 H 0.174 0.826 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.221 -17.722 21.106 30.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 C 0.059 3.941 4 C -0.257 4.257 5 C 0.047 3.953 6 N -0.284 5.284 7 C -0.049 4.049 8 C 0.068 3.932 9 C -0.149 4.149 10 C -0.161 4.161 11 C -0.565 4.565 12 H 0.061 0.939 13 C -0.178 4.178 14 N -0.547 5.547 15 Si 0.779 3.221 16 H -0.201 1.201 17 H -0.206 1.206 18 H -0.197 1.197 19 N -0.305 5.305 20 C 0.167 3.833 21 C -0.042 4.042 22 C -0.153 4.153 23 C -0.056 4.056 24 N -0.200 5.200 25 C -0.060 4.060 26 C -0.152 4.152 27 N -0.237 5.237 28 H 0.275 0.725 29 H 0.065 0.935 30 H 0.106 0.894 31 H 0.079 0.921 32 H 0.122 0.878 33 H 0.133 0.867 34 H 0.167 0.833 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.025 0.975 38 H 0.074 0.926 39 H 0.024 0.976 40 H 0.029 0.971 41 H 0.073 0.927 42 H 0.041 0.959 43 H 0.068 0.932 44 H 0.199 0.801 45 H 0.220 0.780 46 H 0.191 0.809 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.664 -16.436 20.389 28.669 hybrid contribution 0.294 0.662 -0.640 0.967 sum -11.370 -15.774 19.748 27.715 Atomic orbital electron populations 1.21790 0.92822 1.03670 1.02279 1.20851 0.97314 0.86465 1.06701 1.20824 0.93437 0.96140 0.83727 1.21956 1.11326 0.93018 0.99431 1.21648 0.93573 0.93430 0.86627 1.73262 1.21538 1.09021 1.24581 1.21737 0.96231 0.88653 0.98305 1.18086 0.89705 0.93611 0.91764 1.21369 1.01177 0.95278 0.97102 1.21451 0.99172 0.96338 0.99097 1.21387 1.08368 0.95265 1.31507 0.93883 1.25632 0.96611 1.00873 0.94717 1.69986 1.16834 1.34339 1.33498 0.85640 0.78298 0.80612 0.77570 1.20093 1.20565 1.19677 1.69295 1.26218 1.36206 0.98807 1.20814 0.87628 0.81717 0.93109 1.18730 1.00854 0.94789 0.89778 1.22549 0.99619 1.02374 0.90790 1.23421 0.92773 0.90208 0.99150 1.67663 1.11904 1.08891 1.31592 1.22972 0.95622 1.00820 0.86621 1.22362 0.97257 0.95282 1.00336 1.42087 1.59309 1.11819 1.10469 0.72485 0.93485 0.89424 0.92079 0.87799 0.86664 0.83263 0.94845 0.94880 0.97526 0.92587 0.97643 0.97050 0.92745 0.95949 0.93162 0.80073 0.78035 0.80935 0.85674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.89 71.98 0.71 -0.35 16 2 C -0.08 -0.57 6.17 29.85 0.18 -0.39 16 3 C 0.17 2.97 6.10 41.02 0.25 3.22 16 4 C -0.23 -6.64 9.95 23.76 0.24 -6.40 16 5 C 0.32 13.09 7.60 136.54 1.04 14.13 16 6 N -0.56 -27.53 9.09 -341.18 -3.10 -30.63 16 7 C 0.08 4.37 5.18 86.38 0.45 4.81 16 8 C 0.07 3.99 0.57 -52.93 -0.03 3.96 16 9 C -0.09 -5.25 8.09 71.98 0.58 -4.67 16 10 C -0.10 -5.92 8.09 71.98 0.58 -5.34 16 11 C -0.53 -32.02 8.01 25.60 0.21 -31.81 16 12 H 0.04 2.61 7.74 -2.91 -0.02 2.59 16 13 C 0.02 1.19 5.15 84.66 0.44 1.63 16 14 N -0.91 -54.90 9.35 21.45 0.20 -54.70 16 15 Si 0.95 46.38 29.54 68.60 2.03 48.40 16 16 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 17 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 18 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 19 N -0.58 -21.68 7.94 -182.46 -1.45 -23.13 16 20 C 0.44 11.25 7.64 136.77 1.04 12.30 16 21 C -0.03 -0.66 5.91 -19.88 -0.12 -0.78 16 22 C -0.13 -1.45 9.59 22.63 0.22 -1.24 16 23 C 0.10 1.22 11.17 84.65 0.95 2.16 16 24 N -0.49 -9.50 10.34 -196.06 -2.03 -11.52 16 25 C 0.10 2.06 11.17 84.65 0.95 3.01 16 26 C -0.13 -3.33 9.64 22.63 0.22 -3.11 16 27 N -0.61 -9.65 5.27 -175.91 -0.93 -10.58 16 28 H 0.43 2.27 6.71 -92.71 -0.62 1.64 16 29 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.10 0.78 8.12 -2.39 -0.02 0.76 16 33 H 0.12 0.12 8.13 -2.39 -0.02 0.10 16 34 H 0.15 4.16 8.06 -2.91 -0.02 4.14 16 35 H 0.03 1.81 6.70 -2.39 -0.02 1.80 16 36 H 0.03 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.01 0.32 7.60 -2.39 -0.02 0.31 16 38 H 0.06 3.41 6.07 -2.39 -0.01 3.40 16 39 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.05 3.31 6.07 -2.38 -0.01 3.29 16 42 H 0.02 1.21 7.60 -2.39 -0.02 1.19 16 43 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 44 H 0.18 0.13 6.45 -2.91 -0.02 0.11 16 45 H 0.20 0.71 8.06 -2.91 -0.02 0.69 16 46 H 0.17 3.20 8.06 -2.91 -0.02 3.17 16 47 H 0.13 4.02 7.61 -2.91 -0.02 3.99 16 Total: -1.00 -86.00 382.94 2.98 -83.02 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 0.36 Total: 7.99 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: 7.90 Total: -8.85 kcal Atomic # 7 Polarization: -123.26 SS G_CDS: -7.30 Total: -130.56 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.40 kcal Total: -86.00 2.98 -83.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413409012.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.239 kcal (2) G-P(sol) polarization free energy of solvation -85.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds