Wall clock time and date at job start Tue Mar 31 2020 15:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33425 * 119.71662 * 2 1 4 4 C 1.31310 * 121.96170 * 179.97438 * 3 2 1 5 5 C 1.47929 * 119.41260 * 179.97438 * 4 3 2 6 6 C 1.39454 * 119.73629 * 359.97438 * 5 4 3 7 7 C 1.38496 * 119.05163 * 179.97438 * 6 5 4 8 8 C 1.38705 * 118.50637 * 0.02562 * 7 6 5 9 9 C 1.38477 * 119.37746 * 359.97438 * 8 7 6 10 10 N 1.31576 * 120.91417 * 359.73806 * 9 8 7 11 11 N 1.36660 * 121.17822 * 359.97404 * 4 3 2 12 12 H 0.96994 * 120.37058 * 180.02562 * 11 4 3 13 13 C 1.38074 * 119.25373 * 359.78687 * 11 4 3 14 14 N 1.31454 * 120.88481 * 180.25536 * 13 11 4 15 15 C 1.46507 * 119.99863 * 354.21861 * 14 13 11 16 16 C 1.53004 * 109.46943 * 114.59016 * 15 14 13 17 17 C 1.53005 * 109.46747 * 299.99983 * 16 15 14 18 18 C 1.53001 * 109.47407 * 59.99579 * 16 15 14 19 19 C 1.50698 * 109.46943 * 180.02562 * 16 15 14 20 20 H 1.07996 * 120.00031 * 359.97438 * 19 16 15 21 21 C 1.37882 * 119.99931 * 179.97438 * 19 16 15 22 22 N 1.31512 * 119.99820 * 359.97438 * 21 19 16 23 23 Si 1.86797 * 119.99994 * 179.97438 * 21 19 16 24 24 H 1.48498 * 109.47042 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.46972 * 119.99949 * 23 21 19 26 26 H 1.48503 * 109.46950 * 239.99902 * 23 21 19 27 27 C 1.35813 * 119.70555 * 180.02562 * 2 1 3 28 28 C 1.50698 * 120.60394 * 0.02562 * 27 2 1 29 29 H 1.09000 * 109.47244 * 269.98412 * 1 2 3 30 30 H 1.09011 * 109.46637 * 29.97906 * 1 2 3 31 31 H 1.08994 * 109.47388 * 149.97473 * 1 2 3 32 32 H 1.07997 * 120.47185 * 0.02562 * 6 5 4 33 33 H 1.07994 * 120.74510 * 180.02562 * 7 6 5 34 34 H 1.07999 * 120.30611 * 180.02562 * 8 7 6 35 35 H 1.08004 * 119.54090 * 179.97438 * 9 8 7 36 36 H 1.08996 * 109.47305 * 234.58627 * 15 14 13 37 37 H 1.08992 * 109.46918 * 354.59103 * 15 14 13 38 38 H 1.09000 * 109.47250 * 60.00190 * 17 16 15 39 39 H 1.09002 * 109.46830 * 180.02562 * 17 16 15 40 40 H 1.09002 * 109.47452 * 300.00046 * 17 16 15 41 41 H 1.09004 * 109.46703 * 60.00134 * 18 16 15 42 42 H 1.08999 * 109.46764 * 179.97438 * 18 16 15 43 43 H 1.09000 * 109.47401 * 300.00307 * 18 16 15 44 44 H 0.97000 * 120.00398 * 180.02562 * 22 21 19 45 45 H 1.08997 * 109.47407 * 89.99342 * 28 27 2 46 46 H 1.09002 * 109.46967 * 209.99448 * 28 27 2 47 47 H 1.08998 * 109.46846 * 329.99028 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1684 1.1588 0.0000 4 6 3.4805 1.2102 0.0005 5 6 4.1559 2.5263 -0.0001 6 6 3.3944 3.6946 -0.0017 7 6 4.0415 4.9191 -0.0017 8 6 5.4284 4.9349 -0.0007 9 6 6.1215 3.7361 0.0009 10 7 5.4825 2.5859 0.0066 11 7 4.2332 0.0696 0.0016 12 1 5.2018 0.1213 0.0023 13 6 3.5995 -1.1571 0.0066 14 7 4.2920 -2.2744 0.0128 15 6 5.7511 -2.2325 -0.1133 16 6 6.3896 -2.7411 1.1807 17 6 5.9529 -1.8536 2.3480 18 6 5.9411 -4.1809 1.4392 19 6 7.8904 -2.6975 1.0511 20 1 8.3434 -2.3429 0.1372 21 6 8.6852 -3.1103 2.0995 22 7 8.1335 -3.5416 3.2127 23 14 10.5454 -3.0568 1.9387 24 1 10.9115 -2.5362 0.5970 25 1 11.1074 -2.1666 2.9860 26 1 11.0961 -4.4259 2.1050 27 6 2.1800 -1.1796 -0.0005 28 6 1.4336 -2.4888 -0.0017 29 1 -0.3634 -0.0003 1.0277 30 1 -0.3633 0.8903 -0.5136 31 1 -0.3634 -0.8897 -0.5142 32 1 2.3156 3.6451 -0.0021 33 1 3.4788 5.8409 -0.0026 34 1 5.9627 5.8735 -0.0002 35 1 7.2015 3.7453 0.0013 36 1 6.0621 -2.8648 -0.9449 37 1 6.0705 -1.2068 -0.2974 38 1 4.8674 -1.8847 2.4418 39 1 6.4082 -2.2156 3.2698 40 1 6.2724 -0.8278 2.1639 41 1 6.2522 -4.8132 0.6076 42 1 6.3964 -4.5433 2.3609 43 1 4.8556 -4.2120 1.5331 44 1 8.6925 -3.8316 3.9504 45 1 1.2539 -2.8037 -1.0296 46 1 2.0266 -3.2456 0.5118 47 1 0.4804 -2.3639 0.5120 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413410742.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:09 Heat of formation + Delta-G solvation = 94.378594 kcal Electronic energy + Delta-G solvation = -27874.340592 eV Core-core repulsion = 24250.610186 eV Total energy + Delta-G solvation = -3623.730406 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.08428 -39.93593 -36.79582 -35.17903 -34.56743 -32.82137 -31.78756 -31.37237 -30.13858 -29.08354 -26.83288 -25.49906 -25.27428 -24.75003 -23.98903 -23.62275 -21.71542 -20.86279 -18.64425 -18.23256 -17.32574 -16.86637 -16.15481 -15.97059 -15.85281 -15.34991 -14.68811 -14.61472 -14.14595 -14.03994 -13.56619 -13.42376 -13.32802 -12.92105 -12.85943 -12.64774 -12.55121 -12.23723 -12.05616 -11.97877 -11.46469 -11.36301 -11.12254 -10.90583 -10.67987 -10.58559 -10.23836 -10.20787 -10.08441 -9.95867 -9.90527 -9.67816 -9.43477 -9.37936 -8.94454 -8.84418 -8.42318 -8.25323 -6.89584 -5.88891 -4.00342 0.18654 0.99535 1.37754 2.32128 3.01542 3.30834 3.38910 3.42551 3.47648 3.51014 3.98043 4.44640 4.48826 4.54769 4.58789 4.73822 4.77408 4.91260 5.14330 5.29131 5.35761 5.40722 5.54189 5.58181 5.61381 5.71589 5.82171 5.87464 5.94243 6.00241 6.12879 6.23425 6.27931 6.34086 6.57272 6.68146 6.73356 6.90860 6.93097 7.18276 7.22460 7.35270 7.43665 7.55057 7.58885 7.77320 7.82020 8.10336 8.19291 8.33648 8.53218 8.68741 9.01420 9.64492 11.11084 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010104 B = 0.004362 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.483227 B = 6417.435716 C = 8794.897819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.121 3.879 3 N -0.539 5.539 4 C 0.440 3.560 5 C 0.150 3.850 6 C -0.109 4.109 7 C -0.082 4.082 8 C -0.156 4.156 9 C 0.107 3.893 10 N -0.468 5.468 11 N -0.639 5.639 12 H 0.427 0.573 13 C 0.370 3.630 14 N -0.548 5.548 15 C 0.063 3.937 16 C 0.075 3.925 17 C -0.124 4.124 18 C -0.118 4.118 19 C -0.507 4.507 20 H 0.053 0.947 21 C 0.066 3.934 22 N -0.884 5.884 23 Si 0.889 3.111 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.285 1.285 27 C -0.149 4.149 28 C -0.088 4.088 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.154 0.846 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.165 0.835 36 H 0.069 0.931 37 H 0.015 0.985 38 H 0.007 0.993 39 H 0.082 0.918 40 H 0.013 0.987 41 H 0.019 0.981 42 H 0.075 0.925 43 H 0.019 0.981 44 H 0.257 0.743 45 H 0.065 0.935 46 H 0.081 0.919 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.000 16.289 -6.530 21.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.003 3.997 3 N -0.264 5.264 4 C 0.173 3.827 5 C 0.013 3.987 6 C -0.131 4.131 7 C -0.108 4.108 8 C -0.176 4.176 9 C -0.052 4.052 10 N -0.178 5.178 11 N -0.270 5.270 12 H 0.270 0.730 13 C 0.101 3.899 14 N -0.273 5.273 15 C -0.066 4.066 16 C 0.074 3.926 17 C -0.182 4.182 18 C -0.176 4.176 19 C -0.546 4.546 20 H 0.071 0.929 21 C -0.135 4.135 22 N -0.523 5.523 23 Si 0.717 3.283 24 H -0.199 1.199 25 H -0.212 1.212 26 H -0.211 1.211 27 C -0.157 4.157 28 C -0.146 4.146 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.172 0.828 33 H 0.160 0.840 34 H 0.158 0.842 35 H 0.182 0.818 36 H 0.087 0.913 37 H 0.033 0.967 38 H 0.026 0.974 39 H 0.100 0.900 40 H 0.032 0.968 41 H 0.038 0.962 42 H 0.094 0.906 43 H 0.038 0.962 44 H 0.067 0.933 45 H 0.084 0.916 46 H 0.100 0.900 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.117 14.930 -6.298 20.848 hybrid contribution 2.174 0.948 -0.032 2.372 sum -10.944 15.878 -6.330 20.296 Atomic orbital electron populations 1.20632 0.88585 1.03169 1.02835 1.20327 0.96459 0.86919 0.95988 1.67716 1.04193 1.29208 1.25329 1.20345 0.87337 0.85211 0.89765 1.19012 0.89214 0.90397 1.00069 1.22174 1.02517 0.91289 0.97079 1.21644 0.94591 0.98259 0.96345 1.22380 0.95222 1.00119 0.99919 1.22776 1.00765 0.86707 0.94974 1.67437 1.08639 1.30919 1.10790 1.44312 1.12624 1.05177 1.64916 0.72991 1.20109 0.92909 0.80679 0.96187 1.73179 1.09863 1.20347 1.23864 1.22234 0.85335 0.97680 1.01386 1.18118 0.93442 0.92767 0.88296 1.21757 0.96033 0.97251 1.03182 1.21627 0.96870 0.97532 1.01578 1.21153 0.90516 1.42789 1.00108 0.92907 1.24890 0.98214 0.95108 0.95317 1.69855 1.34321 1.43754 1.04334 0.86591 0.86169 0.77587 0.77948 1.19911 1.21172 1.21081 1.20038 0.89940 0.97200 1.08506 1.20449 0.98550 0.93634 1.01931 0.90567 0.90823 0.90471 0.82795 0.84036 0.84184 0.81790 0.91281 0.96656 0.97360 0.89956 0.96774 0.96206 0.90629 0.96222 0.93253 0.91622 0.89984 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.94 9.35 36.01 0.34 -0.61 16 2 C 0.12 1.73 6.75 -82.77 -0.56 1.17 16 3 N -0.54 -7.96 9.27 -7.29 -0.07 -8.03 16 4 C 0.44 6.96 7.67 -154.55 -1.19 5.77 16 5 C 0.15 2.06 6.75 -83.03 -0.56 1.50 16 6 C -0.11 -1.13 9.61 -39.03 -0.37 -1.50 16 7 C -0.08 -0.64 10.17 -39.31 -0.40 -1.04 16 8 C -0.16 -1.20 10.11 -39.32 -0.40 -1.60 16 9 C 0.11 1.11 11.18 -17.57 -0.20 0.92 16 10 N -0.47 -6.56 9.53 -9.83 -0.09 -6.65 16 11 N -0.64 -11.54 5.30 -9.73 -0.05 -11.59 16 12 H 0.43 8.14 5.62 -40.82 -0.23 7.91 16 13 C 0.37 7.08 7.31 -155.63 -1.14 5.94 16 14 N -0.55 -11.74 8.22 -60.06 -0.49 -12.23 16 15 C 0.06 1.46 5.12 -4.04 -0.02 1.44 16 16 C 0.07 1.93 0.57 -155.66 -0.09 1.84 16 17 C -0.12 -3.23 8.09 37.16 0.30 -2.93 16 18 C -0.12 -3.10 8.09 37.16 0.30 -2.80 16 19 C -0.51 -14.13 8.01 -34.44 -0.28 -14.40 16 20 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 21 C 0.07 1.83 5.15 -17.82 -0.09 1.74 16 22 N -0.88 -25.25 9.35 55.43 0.52 -24.74 16 23 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 24 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 27 C -0.15 -2.41 5.93 -104.06 -0.62 -3.03 16 28 C -0.09 -1.21 8.99 36.00 0.32 -0.88 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 31 H 0.08 0.65 6.66 -51.93 -0.35 0.31 16 32 H 0.15 1.43 7.51 -52.49 -0.39 1.04 16 33 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 34 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 35 H 0.16 1.33 8.06 -52.48 -0.42 0.91 16 36 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 37 H 0.02 0.34 5.58 -51.93 -0.29 0.05 16 38 H 0.01 0.19 7.45 -51.93 -0.39 -0.20 16 39 H 0.08 2.33 6.07 -51.93 -0.31 2.01 16 40 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 2.13 6.07 -51.93 -0.32 1.81 16 43 H 0.02 0.48 7.60 -51.93 -0.39 0.08 16 44 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.08 1.31 7.60 -51.93 -0.39 0.92 16 47 H 0.06 0.68 6.69 -51.93 -0.35 0.34 16 LS Contribution 377.31 15.07 5.69 5.69 Total: -1.00 -32.24 377.31 -10.93 -43.17 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -6.76 Total: 6.34 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -4.64 Total: -8.46 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: -0.19 Total: -63.24 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.24 -10.93 -43.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413410742.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.544 kcal (2) G-P(sol) polarization free energy of solvation -32.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds