Wall clock time and date at job start Tue Mar 31 2020 15:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33425 * 119.71662 * 2 1 4 4 C 1.31310 * 121.96170 * 179.97438 * 3 2 1 5 5 C 1.47929 * 119.41260 * 179.97438 * 4 3 2 6 6 C 1.39454 * 119.73629 * 359.97438 * 5 4 3 7 7 C 1.38496 * 119.05163 * 179.97438 * 6 5 4 8 8 C 1.38705 * 118.50637 * 0.02562 * 7 6 5 9 9 C 1.38477 * 119.37746 * 359.97438 * 8 7 6 10 10 N 1.31576 * 120.91417 * 359.73806 * 9 8 7 11 11 N 1.36660 * 121.17822 * 359.97404 * 4 3 2 12 12 H 0.96994 * 120.37058 * 180.02562 * 11 4 3 13 13 C 1.38074 * 119.25373 * 359.78687 * 11 4 3 14 14 N 1.31454 * 120.88481 * 180.25536 * 13 11 4 15 15 C 1.46507 * 119.99863 * 354.21861 * 14 13 11 16 16 C 1.53004 * 109.46943 * 114.59016 * 15 14 13 17 17 C 1.53005 * 109.46747 * 299.99983 * 16 15 14 18 18 C 1.53001 * 109.47407 * 59.99579 * 16 15 14 19 19 C 1.50698 * 109.46943 * 180.02562 * 16 15 14 20 20 H 1.07996 * 120.00031 * 359.97438 * 19 16 15 21 21 C 1.37882 * 119.99931 * 179.97438 * 19 16 15 22 22 N 1.31512 * 119.99820 * 359.97438 * 21 19 16 23 23 Si 1.86797 * 119.99994 * 179.97438 * 21 19 16 24 24 H 1.48498 * 109.47042 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.46972 * 119.99949 * 23 21 19 26 26 H 1.48503 * 109.46950 * 239.99902 * 23 21 19 27 27 C 1.35813 * 119.70555 * 180.02562 * 2 1 3 28 28 C 1.50698 * 120.60394 * 0.02562 * 27 2 1 29 29 H 1.09000 * 109.47244 * 269.98412 * 1 2 3 30 30 H 1.09011 * 109.46637 * 29.97906 * 1 2 3 31 31 H 1.08994 * 109.47388 * 149.97473 * 1 2 3 32 32 H 1.07997 * 120.47185 * 0.02562 * 6 5 4 33 33 H 1.07994 * 120.74510 * 180.02562 * 7 6 5 34 34 H 1.07999 * 120.30611 * 180.02562 * 8 7 6 35 35 H 1.08004 * 119.54090 * 179.97438 * 9 8 7 36 36 H 1.08996 * 109.47305 * 234.58627 * 15 14 13 37 37 H 1.08992 * 109.46918 * 354.59103 * 15 14 13 38 38 H 1.09000 * 109.47250 * 60.00190 * 17 16 15 39 39 H 1.09002 * 109.46830 * 180.02562 * 17 16 15 40 40 H 1.09002 * 109.47452 * 300.00046 * 17 16 15 41 41 H 1.09004 * 109.46703 * 60.00134 * 18 16 15 42 42 H 1.08999 * 109.46764 * 179.97438 * 18 16 15 43 43 H 1.09000 * 109.47401 * 300.00307 * 18 16 15 44 44 H 0.97000 * 120.00398 * 180.02562 * 22 21 19 45 45 H 1.08997 * 109.47407 * 89.99342 * 28 27 2 46 46 H 1.09002 * 109.46967 * 209.99448 * 28 27 2 47 47 H 1.08998 * 109.46846 * 329.99028 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1684 1.1588 0.0000 4 6 3.4805 1.2102 0.0005 5 6 4.1559 2.5263 -0.0001 6 6 3.3944 3.6946 -0.0017 7 6 4.0415 4.9191 -0.0017 8 6 5.4284 4.9349 -0.0007 9 6 6.1215 3.7361 0.0009 10 7 5.4825 2.5859 0.0066 11 7 4.2332 0.0696 0.0016 12 1 5.2018 0.1213 0.0023 13 6 3.5995 -1.1571 0.0066 14 7 4.2920 -2.2744 0.0128 15 6 5.7511 -2.2325 -0.1133 16 6 6.3896 -2.7411 1.1807 17 6 5.9529 -1.8536 2.3480 18 6 5.9411 -4.1809 1.4392 19 6 7.8904 -2.6975 1.0511 20 1 8.3434 -2.3429 0.1372 21 6 8.6852 -3.1103 2.0995 22 7 8.1335 -3.5416 3.2127 23 14 10.5454 -3.0568 1.9387 24 1 10.9115 -2.5362 0.5970 25 1 11.1074 -2.1666 2.9860 26 1 11.0961 -4.4259 2.1050 27 6 2.1800 -1.1796 -0.0005 28 6 1.4336 -2.4888 -0.0017 29 1 -0.3634 -0.0003 1.0277 30 1 -0.3633 0.8903 -0.5136 31 1 -0.3634 -0.8897 -0.5142 32 1 2.3156 3.6451 -0.0021 33 1 3.4788 5.8409 -0.0026 34 1 5.9627 5.8735 -0.0002 35 1 7.2015 3.7453 0.0013 36 1 6.0621 -2.8648 -0.9449 37 1 6.0705 -1.2068 -0.2974 38 1 4.8674 -1.8847 2.4418 39 1 6.4082 -2.2156 3.2698 40 1 6.2724 -0.8278 2.1639 41 1 6.2522 -4.8132 0.6076 42 1 6.3964 -4.5433 2.3609 43 1 4.8556 -4.2120 1.5331 44 1 8.6925 -3.8316 3.9504 45 1 1.2539 -2.8037 -1.0296 46 1 2.0266 -3.2456 0.5118 47 1 0.4804 -2.3639 0.5120 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413410742.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:08 Heat of formation + Delta-G solvation = 76.223811 kcal Electronic energy + Delta-G solvation = -27875.127842 eV Core-core repulsion = 24250.610186 eV Total energy + Delta-G solvation = -3624.517656 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.26015 -40.85716 -38.54488 -36.51914 -36.02059 -33.73431 -33.49331 -32.31810 -31.71304 -30.12807 -28.09445 -27.62138 -27.32575 -26.30170 -25.01827 -24.50000 -22.79659 -22.24190 -20.47216 -19.44554 -18.65232 -18.00139 -17.82911 -17.05026 -16.85342 -16.70787 -16.46469 -15.92118 -15.25469 -15.13963 -14.97305 -14.75850 -14.50937 -14.25093 -14.06968 -14.00225 -13.66465 -13.62081 -13.36367 -13.28563 -13.02817 -12.81848 -12.72847 -12.55738 -12.38921 -12.34584 -12.25140 -12.15427 -11.52449 -11.37398 -11.06858 -10.99431 -10.87404 -10.80303 -10.60662 -10.44155 -10.16805 -10.03603 -8.31502 -8.00538 -6.21620 -0.80787 0.24835 0.36079 1.03109 1.37851 1.39815 1.50951 1.73782 2.41397 2.44737 2.49054 2.89934 3.18610 3.37194 3.58632 3.70599 3.97630 4.04441 4.08590 4.16023 4.26093 4.39371 4.43187 4.50680 4.59697 4.67116 4.81091 4.81714 4.85547 4.87881 4.92393 4.96469 5.06750 5.07774 5.09410 5.18210 5.19217 5.26637 5.32372 5.40117 5.54285 5.57837 5.62048 5.64227 5.67775 5.94342 6.04249 6.19863 6.41096 6.74939 6.83700 6.90405 7.15753 7.46283 8.96283 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010104 B = 0.004362 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.483227 B = 6417.435716 C = 8794.897819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.138 3.862 3 N -0.534 5.534 4 C 0.432 3.568 5 C 0.110 3.890 6 C -0.104 4.104 7 C -0.074 4.074 8 C -0.134 4.134 9 C 0.087 3.913 10 N -0.511 5.511 11 N -0.647 5.647 12 H 0.419 0.581 13 C 0.375 3.625 14 N -0.589 5.589 15 C 0.080 3.920 16 C 0.067 3.933 17 C -0.100 4.100 18 C -0.102 4.102 19 C -0.528 4.528 20 H 0.046 0.954 21 C 0.022 3.978 22 N -0.906 5.906 23 Si 0.953 3.047 24 H -0.270 1.270 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.189 4.189 28 C -0.078 4.078 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.164 0.836 33 H 0.184 0.816 34 H 0.181 0.819 35 H 0.178 0.822 36 H 0.054 0.946 37 H 0.011 0.989 38 H 0.007 0.993 39 H 0.057 0.943 40 H 0.008 0.992 41 H 0.014 0.986 42 H 0.053 0.947 43 H 0.023 0.977 44 H 0.259 0.741 45 H 0.074 0.926 46 H 0.051 0.949 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.418 19.573 -6.975 25.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.019 3.981 3 N -0.259 5.259 4 C 0.167 3.833 5 C -0.025 4.025 6 C -0.125 4.125 7 C -0.100 4.100 8 C -0.154 4.154 9 C -0.072 4.072 10 N -0.222 5.222 11 N -0.275 5.275 12 H 0.260 0.740 13 C 0.108 3.892 14 N -0.316 5.316 15 C -0.051 4.051 16 C 0.066 3.934 17 C -0.158 4.158 18 C -0.160 4.160 19 C -0.566 4.566 20 H 0.065 0.935 21 C -0.177 4.177 22 N -0.545 5.545 23 Si 0.778 3.222 24 H -0.195 1.195 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.197 4.197 28 C -0.136 4.136 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.181 0.819 33 H 0.202 0.798 34 H 0.199 0.801 35 H 0.195 0.805 36 H 0.072 0.928 37 H 0.029 0.971 38 H 0.026 0.974 39 H 0.076 0.924 40 H 0.027 0.973 41 H 0.033 0.967 42 H 0.072 0.928 43 H 0.042 0.958 44 H 0.068 0.932 45 H 0.093 0.907 46 H 0.071 0.929 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.563 18.247 -6.748 24.302 hybrid contribution 2.534 0.220 0.099 2.546 sum -12.029 18.467 -6.649 23.020 Atomic orbital electron populations 1.20804 0.84904 1.04931 1.04345 1.21104 0.98701 0.85978 0.92361 1.67899 1.03523 1.29269 1.25181 1.21076 0.87798 0.85629 0.88748 1.19027 0.89655 0.90228 1.03601 1.22368 1.02877 0.91207 0.96084 1.22151 0.94852 0.98625 0.94330 1.22831 0.95473 1.00521 0.96582 1.23230 1.01748 0.86975 0.95252 1.67320 1.09294 1.33232 1.12310 1.44436 1.12438 1.05906 1.64769 0.74024 1.20707 0.94288 0.80525 0.93706 1.73183 1.07981 1.21534 1.28909 1.21832 0.87211 0.96807 0.99203 1.18138 0.93012 0.92498 0.89706 1.21474 0.95527 0.96709 1.02073 1.21435 0.96791 0.97759 1.00043 1.21400 0.91791 1.43319 1.00127 0.93530 1.25615 1.02540 0.94637 0.94935 1.69987 1.35771 1.43916 1.04790 0.85595 0.80838 0.77670 0.78048 1.19465 1.20560 1.20625 1.20324 0.88576 0.99148 1.11682 1.20409 0.99039 0.91605 1.02540 0.88871 0.89269 0.88552 0.81879 0.79831 0.80138 0.80458 0.92773 0.97055 0.97402 0.92372 0.97331 0.96680 0.92833 0.95814 0.93161 0.90727 0.92947 0.88773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.53 9.35 71.24 0.67 -0.87 16 2 C 0.14 3.73 6.75 41.75 0.28 4.01 16 3 N -0.53 -15.22 9.27 -176.96 -1.64 -16.86 16 4 C 0.43 13.84 7.67 136.52 1.05 14.89 16 5 C 0.11 3.00 6.75 41.86 0.28 3.29 16 6 C -0.10 -1.92 9.61 22.62 0.22 -1.70 16 7 C -0.07 -0.85 10.17 22.44 0.23 -0.62 16 8 C -0.13 -1.57 10.11 22.44 0.23 -1.35 16 9 C 0.09 1.71 11.18 84.79 0.95 2.65 16 10 N -0.51 -14.50 9.53 -185.00 -1.76 -16.27 16 11 N -0.65 -24.41 5.30 -184.70 -0.98 -25.39 16 12 H 0.42 17.05 5.62 -92.71 -0.52 16.53 16 13 C 0.37 14.90 7.31 134.37 0.98 15.88 16 14 N -0.59 -26.57 8.22 -343.93 -2.83 -29.39 16 15 C 0.08 3.91 5.12 86.38 0.44 4.35 16 16 C 0.07 3.65 0.57 -52.93 -0.03 3.62 16 17 C -0.10 -5.43 8.09 71.98 0.58 -4.85 16 18 C -0.10 -5.61 8.09 71.98 0.58 -5.03 16 19 C -0.53 -30.45 8.01 25.60 0.21 -30.24 16 20 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 21 C 0.02 1.23 5.15 84.66 0.44 1.67 16 22 N -0.91 -53.12 9.35 21.45 0.20 -52.92 16 23 Si 0.95 44.90 29.54 68.60 2.03 46.93 16 24 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 26 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 27 C -0.19 -6.10 5.93 -19.50 -0.12 -6.22 16 28 C -0.08 -2.11 8.99 71.24 0.64 -1.47 16 29 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.10 1.27 6.66 -2.39 -0.02 1.25 16 32 H 0.16 2.61 7.51 -2.91 -0.02 2.59 16 33 H 0.18 0.58 8.06 -2.91 -0.02 0.56 16 34 H 0.18 0.66 8.06 -2.91 -0.02 0.63 16 35 H 0.18 2.71 8.06 -2.91 -0.02 2.68 16 36 H 0.05 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.01 0.55 5.58 -2.39 -0.01 0.53 16 38 H 0.01 0.38 7.45 -2.39 -0.02 0.36 16 39 H 0.06 3.42 6.07 -2.39 -0.01 3.40 16 40 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.01 0.77 8.14 -2.38 -0.02 0.75 16 42 H 0.05 3.14 6.07 -2.39 -0.01 3.12 16 43 H 0.02 1.22 7.60 -2.39 -0.02 1.20 16 44 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 45 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.05 1.72 7.60 -2.39 -0.02 1.70 16 47 H 0.09 1.85 6.69 -2.39 -0.02 1.83 16 Total: -1.00 -74.26 377.31 3.11 -71.15 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 0.47 Total: 24.74 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: 7.62 Total: -1.99 kcal Atomic # 7 Polarization: -133.81 SS G_CDS: -7.01 Total: -140.82 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -74.26 3.11 -71.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413410742.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.369 kcal (2) G-P(sol) polarization free energy of solvation -74.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds