Wall clock time and date at job start Tue Mar 31 2020 15:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.36750 * 120.35307 * 2 1 4 4 H 0.97000 * 119.44410 * 359.95433 * 3 2 1 5 5 C 1.36166 * 121.12294 * 179.97438 * 3 2 1 6 6 C 1.48066 * 119.07530 * 180.02562 * 5 3 2 7 7 C 1.39855 * 120.92226 * 359.71799 * 6 5 3 8 8 C 1.38090 * 118.99853 * 179.71149 * 7 6 5 9 9 N 1.31851 * 120.89628 * 0.57615 * 8 7 6 10 10 C 1.31851 * 122.05084 * 359.72183 * 9 8 7 11 11 C 1.38088 * 120.89783 * 359.97178 * 10 9 8 12 12 N 1.31142 * 121.84383 * 359.70866 * 5 3 2 13 13 C 1.35082 * 120.54989 * 0.57868 * 12 5 3 14 14 N 1.31944 * 120.56654 * 179.70824 * 13 12 5 15 15 C 1.46499 * 120.00031 * 359.72658 * 14 13 12 16 16 C 1.52998 * 109.47194 * 119.99594 * 15 14 13 17 17 C 1.52996 * 109.47216 * 300.00380 * 16 15 14 18 18 C 1.53004 * 109.46876 * 60.00013 * 16 15 14 19 19 C 1.50700 * 109.47092 * 179.97438 * 16 15 14 20 20 H 1.07992 * 119.99981 * 0.02562 * 19 16 15 21 21 C 1.37873 * 119.99870 * 179.97438 * 19 16 15 22 22 N 1.31512 * 120.00354 * 0.02562 * 21 19 16 23 23 Si 1.86800 * 120.00080 * 179.97438 * 21 19 16 24 24 H 1.48499 * 109.47028 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47032 * 120.00213 * 23 21 19 26 26 H 1.48495 * 109.47422 * 240.00305 * 23 21 19 27 27 C 1.34860 * 120.35404 * 179.97438 * 2 1 3 28 28 C 1.50702 * 120.84043 * 359.97438 * 27 2 1 29 29 H 1.09000 * 109.47043 * 270.02117 * 1 2 3 30 30 H 1.08997 * 109.47157 * 30.01831 * 1 2 3 31 31 H 1.09001 * 109.47271 * 150.01920 * 1 2 3 32 32 H 1.08005 * 120.50415 * 359.97438 * 7 6 5 33 33 H 1.07996 * 119.55455 * 180.30039 * 8 7 6 34 34 H 1.07998 * 119.55008 * 179.97438 * 10 9 8 35 35 H 1.08003 * 120.50121 * 180.02562 * 11 10 9 36 36 H 1.08998 * 109.47023 * 239.99620 * 15 14 13 37 37 H 1.09004 * 109.46973 * 0.02562 * 15 14 13 38 38 H 1.08996 * 109.47637 * 59.99765 * 17 16 15 39 39 H 1.09003 * 109.47528 * 180.02562 * 17 16 15 40 40 H 1.09004 * 109.47216 * 299.99700 * 17 16 15 41 41 H 1.08998 * 109.46846 * 60.00315 * 18 16 15 42 42 H 1.09009 * 109.46730 * 179.97438 * 18 16 15 43 43 H 1.08996 * 109.47095 * 299.99694 * 18 16 15 44 44 H 0.97003 * 120.00631 * 180.02562 * 22 21 19 45 45 H 1.09004 * 109.46838 * 270.02211 * 28 27 2 46 46 H 1.08995 * 109.47030 * 30.01887 * 28 27 2 47 47 H 1.08998 * 109.47559 * 150.02372 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1980 1.1801 0.0000 4 1 1.7101 2.0184 -0.0007 5 6 3.5596 1.1983 0.0005 6 6 4.2617 2.5020 0.0011 7 6 3.5461 3.7036 -0.0048 8 6 4.2413 4.8967 0.0020 9 7 5.5597 4.9121 0.0026 10 6 6.2724 3.8028 0.0021 11 6 5.6588 2.5658 0.0016 12 7 4.2664 0.0937 0.0067 13 6 3.6566 -1.1116 0.0011 14 7 4.3675 -2.2232 0.0015 15 6 5.8310 -2.1568 0.0021 16 6 6.3726 -2.8539 1.2517 17 6 5.8299 -2.1563 2.5005 18 6 5.9285 -4.3181 1.2518 19 6 7.8781 -2.7861 1.2519 20 1 8.3966 -2.2946 0.4421 21 6 8.5934 -3.3507 2.2866 22 7 7.9620 -3.9488 3.2731 23 14 10.4595 -3.2673 2.2866 24 1 10.9228 -2.5466 1.0737 25 1 10.9227 -2.5446 3.4984 26 1 11.0166 -4.6438 2.2880 27 6 2.1885 -1.1637 0.0005 28 6 1.4624 -2.4843 0.0017 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3634 -0.8902 -0.5135 32 1 2.4661 3.6985 -0.0103 33 1 3.6978 5.8299 0.0024 34 1 7.3508 3.8626 0.0022 35 1 6.2489 1.6612 0.0016 36 1 6.2175 -2.6538 -0.8876 37 1 6.1473 -1.1137 0.0025 38 1 4.7411 -2.2057 2.5002 39 1 6.2162 -2.6527 3.3908 40 1 6.1463 -1.1132 2.5005 41 1 6.3152 -4.8150 0.3620 42 1 6.3149 -4.8148 2.1418 43 1 4.8397 -4.3675 1.2514 44 1 8.4652 -4.3457 4.0012 45 1 1.2874 -2.8017 1.0297 46 1 0.5074 -2.3742 -0.5121 47 1 2.0671 -3.2320 -0.5115 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413412799.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:33 Heat of formation + Delta-G solvation = 96.855099 kcal Electronic energy + Delta-G solvation = -27730.272361 eV Core-core repulsion = 24106.649345 eV Total energy + Delta-G solvation = -3623.623017 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.08743 -39.87444 -36.62028 -35.21191 -34.76288 -32.32475 -32.03589 -31.42381 -30.14342 -29.08299 -26.82217 -25.38215 -25.14487 -24.60561 -24.30980 -23.60508 -21.58594 -20.82630 -18.63479 -18.39200 -17.33603 -16.81395 -16.09219 -15.87335 -15.77309 -15.39187 -14.79949 -14.58407 -14.17495 -13.97056 -13.75779 -13.53949 -13.36554 -13.28270 -13.02339 -12.73680 -12.35302 -12.20189 -11.98640 -11.91127 -11.71232 -11.44019 -11.06020 -10.94196 -10.65332 -10.51441 -10.46356 -10.05776 -9.99406 -9.81268 -9.74418 -9.44050 -9.31019 -9.25559 -8.93282 -8.70229 -8.23792 -8.12769 -6.95345 -5.80563 -3.90873 0.34145 0.88455 1.58264 1.93262 2.67514 3.36233 3.43971 3.48113 3.56487 3.80886 4.15021 4.19000 4.30616 4.48323 4.54166 4.66319 4.77246 4.86275 5.02884 5.16352 5.20177 5.27875 5.38707 5.42427 5.44092 5.57666 5.60845 5.74718 5.93637 5.96440 6.05135 6.35652 6.40019 6.53449 6.61258 6.76196 6.84516 6.94160 7.08313 7.20143 7.30614 7.37814 7.54206 7.66797 7.69072 7.88866 7.90800 8.23588 8.32206 8.45144 8.63419 8.77814 9.11260 9.73085 11.19571 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.009996 B = 0.004254 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.544911 B = 6580.197214 C = 8994.885597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.104 3.896 3 N -0.639 5.639 4 H 0.407 0.593 5 C 0.423 3.577 6 C -0.008 4.008 7 C -0.159 4.159 8 C 0.098 3.902 9 N -0.477 5.477 10 C 0.102 3.898 11 C -0.109 4.109 12 N -0.520 5.520 13 C 0.310 3.690 14 N -0.488 5.488 15 C 0.056 3.944 16 C 0.079 3.921 17 C -0.118 4.118 18 C -0.120 4.120 19 C -0.501 4.501 20 H 0.052 0.948 21 C 0.064 3.936 22 N -0.886 5.886 23 Si 0.887 3.113 24 H -0.274 1.274 25 H -0.286 1.286 26 H -0.285 1.285 27 C -0.144 4.144 28 C -0.087 4.087 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.133 0.867 33 H 0.160 0.840 34 H 0.165 0.835 35 H 0.158 0.842 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.004 0.996 39 H 0.077 0.923 40 H 0.015 0.985 41 H 0.017 0.983 42 H 0.074 0.926 43 H 0.017 0.983 44 H 0.256 0.744 45 H 0.067 0.933 46 H 0.059 0.941 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.039 15.675 -6.909 24.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.000 4.000 3 N -0.263 5.263 4 H 0.243 0.757 5 C 0.148 3.852 6 C -0.019 4.019 7 C -0.181 4.181 8 C -0.059 4.059 9 N -0.186 5.186 10 C -0.055 4.055 11 C -0.131 4.131 12 N -0.244 5.244 13 C 0.032 3.968 14 N -0.205 5.205 15 C -0.073 4.073 16 C 0.078 3.922 17 C -0.176 4.176 18 C -0.178 4.178 19 C -0.540 4.540 20 H 0.071 0.929 21 C -0.137 4.137 22 N -0.525 5.525 23 Si 0.716 3.284 24 H -0.199 1.199 25 H -0.212 1.212 26 H -0.212 1.212 27 C -0.156 4.156 28 C -0.145 4.145 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.151 0.849 33 H 0.177 0.823 34 H 0.182 0.818 35 H 0.176 0.824 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.023 0.977 39 H 0.096 0.904 40 H 0.035 0.965 41 H 0.036 0.964 42 H 0.093 0.907 43 H 0.036 0.964 44 H 0.066 0.934 45 H 0.086 0.914 46 H 0.077 0.923 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.599 14.899 -6.739 22.600 hybrid contribution 0.035 0.281 0.125 0.309 sum -15.564 15.180 -6.614 22.725 Atomic orbital electron populations 1.20880 0.88189 1.04097 1.03618 1.19900 0.93968 0.84618 1.01563 1.41896 1.05507 1.08601 1.70261 0.75690 1.20422 0.79786 0.93301 0.91673 1.18628 0.93932 0.89377 0.99934 1.22110 1.00865 0.92792 1.02326 1.22641 0.90135 0.97382 0.95758 1.67596 1.08115 1.32184 1.10702 1.22897 1.00887 0.87010 0.94696 1.22518 0.93795 1.00886 0.95903 1.69313 1.35913 0.97809 1.21341 1.20868 0.90686 0.86680 0.98518 1.73234 1.10467 1.22983 1.13809 1.22308 0.84707 1.00212 1.00106 1.18050 0.93630 0.91832 0.88672 1.21675 0.95436 0.98051 1.02454 1.21663 0.96535 0.98669 1.00931 1.21169 0.90823 1.35347 1.06612 0.92938 1.24888 0.97876 0.95316 0.95572 1.69866 1.34382 1.37713 1.10563 0.86611 0.86436 0.77584 0.77780 1.19901 1.21224 1.21174 1.20676 0.92310 0.94685 1.07928 1.20445 0.98301 0.93512 1.02215 0.89991 0.91236 0.88958 0.84916 0.82270 0.81753 0.82432 0.92264 0.93371 0.97655 0.90417 0.96535 0.96395 0.90723 0.96374 0.93387 0.91422 0.92281 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 9.74 36.01 0.35 -0.34 16 2 C 0.10 1.14 6.85 -81.60 -0.56 0.58 16 3 N -0.64 -6.53 5.27 -6.95 -0.04 -6.56 16 4 H 0.41 2.50 6.72 -40.82 -0.27 2.22 16 5 C 0.42 5.79 7.64 -155.09 -1.18 4.60 16 6 C -0.01 -0.10 5.91 -104.65 -0.62 -0.72 16 7 C -0.16 -1.29 9.59 -39.03 -0.37 -1.66 16 8 C 0.10 0.82 11.17 -17.60 -0.20 0.63 16 9 N -0.48 -5.23 10.34 -13.32 -0.14 -5.37 16 10 C 0.10 1.12 11.17 -17.60 -0.20 0.92 16 11 C -0.11 -1.36 9.64 -39.03 -0.38 -1.74 16 12 N -0.52 -9.43 7.94 -9.02 -0.07 -9.50 16 13 C 0.31 6.02 7.59 -155.93 -1.18 4.83 16 14 N -0.49 -10.90 8.36 -59.19 -0.49 -11.39 16 15 C 0.06 1.38 5.18 -4.04 -0.02 1.36 16 16 C 0.08 2.12 0.57 -155.66 -0.09 2.03 16 17 C -0.12 -3.19 8.09 37.16 0.30 -2.89 16 18 C -0.12 -3.23 8.09 37.16 0.30 -2.93 16 19 C -0.50 -14.35 8.01 -34.44 -0.28 -14.63 16 20 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 21 C 0.06 1.82 5.15 -17.82 -0.09 1.72 16 22 N -0.89 -25.83 9.35 55.43 0.52 -25.31 16 23 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 24 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 C -0.14 -2.16 6.06 -102.31 -0.62 -2.78 16 28 C -0.09 -1.13 9.47 36.01 0.34 -0.79 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.53 5.98 -51.93 -0.31 0.22 16 32 H 0.13 0.59 6.45 -52.48 -0.34 0.25 16 33 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.17 1.47 8.06 -52.49 -0.42 1.04 16 35 H 0.16 2.25 7.61 -52.48 -0.40 1.85 16 36 H 0.06 1.48 8.14 -51.93 -0.42 1.05 16 37 H 0.05 1.18 6.70 -51.93 -0.35 0.84 16 38 H 0.00 0.12 7.60 -51.93 -0.39 -0.28 16 39 H 0.08 2.25 6.07 -51.93 -0.32 1.94 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 2.15 6.07 -51.92 -0.32 1.83 16 43 H 0.02 0.45 7.60 -51.93 -0.39 0.05 16 44 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 45 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.06 0.55 5.99 -51.93 -0.31 0.24 16 47 H 0.08 1.21 7.71 -51.93 -0.40 0.81 16 LS Contribution 377.58 15.07 5.69 5.69 Total: -1.00 -35.36 377.58 -10.77 -46.13 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.73 Total: 1.20 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -4.49 Total: -11.80 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: -0.22 Total: -58.14 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.36 -10.77 -46.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413412799.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.988 kcal (2) G-P(sol) polarization free energy of solvation -35.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds