Wall clock time and date at job start Tue Mar 31 2020 15:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.36750 * 120.35307 * 2 1 4 4 H 0.97000 * 119.44410 * 359.95433 * 3 2 1 5 5 C 1.36166 * 121.12294 * 179.97438 * 3 2 1 6 6 C 1.48066 * 119.07530 * 180.02562 * 5 3 2 7 7 C 1.39855 * 120.92226 * 359.71799 * 6 5 3 8 8 C 1.38090 * 118.99853 * 179.71149 * 7 6 5 9 9 N 1.31851 * 120.89628 * 0.57615 * 8 7 6 10 10 C 1.31851 * 122.05084 * 359.72183 * 9 8 7 11 11 C 1.38088 * 120.89783 * 359.97178 * 10 9 8 12 12 N 1.31142 * 121.84383 * 359.70866 * 5 3 2 13 13 C 1.35082 * 120.54989 * 0.57868 * 12 5 3 14 14 N 1.31944 * 120.56654 * 179.70824 * 13 12 5 15 15 C 1.46499 * 120.00031 * 359.72658 * 14 13 12 16 16 C 1.52998 * 109.47194 * 119.99594 * 15 14 13 17 17 C 1.52996 * 109.47216 * 300.00380 * 16 15 14 18 18 C 1.53004 * 109.46876 * 60.00013 * 16 15 14 19 19 C 1.50700 * 109.47092 * 179.97438 * 16 15 14 20 20 H 1.07992 * 119.99981 * 0.02562 * 19 16 15 21 21 C 1.37873 * 119.99870 * 179.97438 * 19 16 15 22 22 N 1.31512 * 120.00354 * 0.02562 * 21 19 16 23 23 Si 1.86800 * 120.00080 * 179.97438 * 21 19 16 24 24 H 1.48499 * 109.47028 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47032 * 120.00213 * 23 21 19 26 26 H 1.48495 * 109.47422 * 240.00305 * 23 21 19 27 27 C 1.34860 * 120.35404 * 179.97438 * 2 1 3 28 28 C 1.50702 * 120.84043 * 359.97438 * 27 2 1 29 29 H 1.09000 * 109.47043 * 270.02117 * 1 2 3 30 30 H 1.08997 * 109.47157 * 30.01831 * 1 2 3 31 31 H 1.09001 * 109.47271 * 150.01920 * 1 2 3 32 32 H 1.08005 * 120.50415 * 359.97438 * 7 6 5 33 33 H 1.07996 * 119.55455 * 180.30039 * 8 7 6 34 34 H 1.07998 * 119.55008 * 179.97438 * 10 9 8 35 35 H 1.08003 * 120.50121 * 180.02562 * 11 10 9 36 36 H 1.08998 * 109.47023 * 239.99620 * 15 14 13 37 37 H 1.09004 * 109.46973 * 0.02562 * 15 14 13 38 38 H 1.08996 * 109.47637 * 59.99765 * 17 16 15 39 39 H 1.09003 * 109.47528 * 180.02562 * 17 16 15 40 40 H 1.09004 * 109.47216 * 299.99700 * 17 16 15 41 41 H 1.08998 * 109.46846 * 60.00315 * 18 16 15 42 42 H 1.09009 * 109.46730 * 179.97438 * 18 16 15 43 43 H 1.08996 * 109.47095 * 299.99694 * 18 16 15 44 44 H 0.97003 * 120.00631 * 180.02562 * 22 21 19 45 45 H 1.09004 * 109.46838 * 270.02211 * 28 27 2 46 46 H 1.08995 * 109.47030 * 30.01887 * 28 27 2 47 47 H 1.08998 * 109.47559 * 150.02372 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1980 1.1801 0.0000 4 1 1.7101 2.0184 -0.0007 5 6 3.5596 1.1983 0.0005 6 6 4.2617 2.5020 0.0011 7 6 3.5461 3.7036 -0.0048 8 6 4.2413 4.8967 0.0020 9 7 5.5597 4.9121 0.0026 10 6 6.2724 3.8028 0.0021 11 6 5.6588 2.5658 0.0016 12 7 4.2664 0.0937 0.0067 13 6 3.6566 -1.1116 0.0011 14 7 4.3675 -2.2232 0.0015 15 6 5.8310 -2.1568 0.0021 16 6 6.3726 -2.8539 1.2517 17 6 5.8299 -2.1563 2.5005 18 6 5.9285 -4.3181 1.2518 19 6 7.8781 -2.7861 1.2519 20 1 8.3966 -2.2946 0.4421 21 6 8.5934 -3.3507 2.2866 22 7 7.9620 -3.9488 3.2731 23 14 10.4595 -3.2673 2.2866 24 1 10.9228 -2.5466 1.0737 25 1 10.9227 -2.5446 3.4984 26 1 11.0166 -4.6438 2.2880 27 6 2.1885 -1.1637 0.0005 28 6 1.4624 -2.4843 0.0017 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3634 -0.8902 -0.5135 32 1 2.4661 3.6985 -0.0103 33 1 3.6978 5.8299 0.0024 34 1 7.3508 3.8626 0.0022 35 1 6.2489 1.6612 0.0016 36 1 6.2175 -2.6538 -0.8876 37 1 6.1473 -1.1137 0.0025 38 1 4.7411 -2.2057 2.5002 39 1 6.2162 -2.6527 3.3908 40 1 6.1463 -1.1132 2.5005 41 1 6.3152 -4.8150 0.3620 42 1 6.3149 -4.8148 2.1418 43 1 4.8397 -4.3675 1.2514 44 1 8.4652 -4.3457 4.0012 45 1 1.2874 -2.8017 1.0297 46 1 0.5074 -2.3742 -0.5121 47 1 2.0671 -3.2320 -0.5115 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413412799.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:32 Heat of formation + Delta-G solvation = 74.681846 kcal Electronic energy + Delta-G solvation = -27731.233866 eV Core-core repulsion = 24106.649345 eV Total energy + Delta-G solvation = -3624.584521 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.14244 -40.77332 -38.40331 -36.36291 -36.17587 -33.79473 -33.22299 -32.41988 -31.74667 -29.89565 -27.98122 -27.56354 -27.29259 -26.23318 -25.28514 -24.48146 -22.60839 -22.15635 -20.36563 -19.43646 -18.56243 -18.01811 -17.78583 -16.93845 -16.75010 -16.67775 -16.40488 -16.12422 -15.17151 -14.98781 -14.96103 -14.68295 -14.58752 -14.34565 -14.13600 -14.03765 -13.85385 -13.71185 -13.34132 -13.14628 -13.00625 -12.76629 -12.73338 -12.55729 -12.52365 -12.35905 -12.15456 -12.13136 -11.54833 -11.41444 -11.13307 -10.92002 -10.77346 -10.63020 -10.40669 -10.20520 -10.14914 -9.83195 -8.32280 -7.97841 -6.17967 -0.63264 0.09952 0.49921 0.86039 1.38517 1.39487 1.51718 1.66854 2.43589 2.66622 2.79581 2.95943 3.20779 3.36191 3.50041 3.64588 3.89218 3.93338 4.04579 4.16595 4.24203 4.38300 4.50458 4.54303 4.66078 4.71212 4.74959 4.78785 4.80242 4.85977 4.94003 4.98575 5.05738 5.09252 5.12887 5.16215 5.19455 5.35584 5.39808 5.46406 5.55192 5.60185 5.62773 5.63186 5.66884 6.11851 6.22596 6.26940 6.47080 6.87388 6.90298 7.08172 7.31163 7.49298 8.99509 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.009996 B = 0.004254 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.544911 B = 6580.197214 C = 8994.885597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.148 3.852 3 N -0.613 5.613 4 H 0.433 0.567 5 C 0.437 3.563 6 C -0.030 4.030 7 C -0.132 4.132 8 C 0.102 3.898 9 N -0.491 5.491 10 C 0.095 3.905 11 C -0.131 4.131 12 N -0.581 5.581 13 C 0.324 3.676 14 N -0.555 5.555 15 C 0.081 3.919 16 C 0.070 3.930 17 C -0.090 4.090 18 C -0.101 4.101 19 C -0.525 4.525 20 H 0.042 0.958 21 C 0.020 3.980 22 N -0.907 5.907 23 Si 0.953 3.047 24 H -0.271 1.271 25 H -0.278 1.278 26 H -0.278 1.278 27 C -0.202 4.202 28 C -0.077 4.077 29 H 0.102 0.898 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.182 0.818 33 H 0.203 0.797 34 H 0.173 0.827 35 H 0.124 0.876 36 H 0.032 0.968 37 H 0.031 0.969 38 H 0.005 0.995 39 H 0.055 0.945 40 H 0.003 0.997 41 H 0.010 0.990 42 H 0.053 0.947 43 H 0.022 0.978 44 H 0.259 0.741 45 H 0.060 0.940 46 H 0.100 0.900 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.788 19.452 -7.170 29.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.042 3.958 3 N -0.236 5.236 4 H 0.275 0.725 5 C 0.164 3.836 6 C -0.041 4.041 7 C -0.154 4.154 8 C -0.055 4.055 9 N -0.201 5.201 10 C -0.060 4.060 11 C -0.153 4.153 12 N -0.308 5.308 13 C 0.048 3.952 14 N -0.276 5.276 15 C -0.050 4.050 16 C 0.069 3.931 17 C -0.148 4.148 18 C -0.159 4.159 19 C -0.564 4.564 20 H 0.060 0.940 21 C -0.178 4.178 22 N -0.547 5.547 23 Si 0.779 3.221 24 H -0.196 1.196 25 H -0.204 1.204 26 H -0.204 1.204 27 C -0.214 4.214 28 C -0.134 4.134 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.199 0.801 33 H 0.220 0.780 34 H 0.190 0.810 35 H 0.142 0.858 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.024 0.976 39 H 0.074 0.926 40 H 0.022 0.978 41 H 0.029 0.971 42 H 0.072 0.928 43 H 0.041 0.959 44 H 0.068 0.932 45 H 0.079 0.921 46 H 0.119 0.881 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -19.392 18.763 -7.005 27.878 hybrid contribution 0.916 -0.485 0.174 1.051 sum -18.476 18.278 -6.831 26.872 Atomic orbital electron populations 1.21144 0.83402 1.06564 1.05574 1.20683 0.96406 0.83216 0.95530 1.42058 1.04571 1.10074 1.66905 0.72482 1.20807 0.81097 0.93136 0.88601 1.18737 0.93660 0.89753 1.01934 1.22550 1.03014 0.90724 0.99084 1.23426 0.89366 0.99182 0.93574 1.67664 1.09765 1.31721 1.10918 1.22968 1.01568 0.86554 0.94947 1.22357 0.94704 1.00340 0.97921 1.69294 1.37703 0.98658 1.25129 1.21584 0.92786 0.86604 0.94228 1.73235 1.07813 1.24515 1.22011 1.21736 0.87591 0.98093 0.97545 1.18073 0.93044 0.91946 0.89999 1.21357 0.95114 0.96787 1.01564 1.21440 0.96560 0.98619 0.99304 1.21407 0.92140 1.36004 1.06816 0.93979 1.25625 1.02445 0.94735 0.95034 1.69994 1.36002 1.37805 1.10852 0.85591 0.80821 0.77806 0.77919 1.19599 1.20422 1.20414 1.20817 0.90292 0.97253 1.13048 1.20362 0.99315 0.91848 1.01892 0.87929 0.87455 0.87843 0.80055 0.78015 0.80951 0.85765 0.94945 0.95068 0.97582 0.92624 0.97763 0.97096 0.92805 0.95893 0.93181 0.92139 0.88144 0.93499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 9.74 71.24 0.69 0.02 16 2 C 0.15 2.68 6.85 41.02 0.28 2.96 16 3 N -0.61 -9.91 5.27 -175.90 -0.93 -10.84 16 4 H 0.43 2.38 6.72 -92.71 -0.62 1.76 16 5 C 0.44 11.42 7.64 136.77 1.04 12.47 16 6 C -0.03 -0.66 5.91 -19.88 -0.12 -0.78 16 7 C -0.13 -1.51 9.59 22.63 0.22 -1.30 16 8 C 0.10 1.26 11.17 84.65 0.95 2.20 16 9 N -0.49 -9.67 10.34 -196.05 -2.03 -11.70 16 10 C 0.10 2.10 11.17 84.65 0.95 3.05 16 11 C -0.13 -3.42 9.64 22.63 0.22 -3.21 16 12 N -0.58 -22.11 7.94 -182.45 -1.45 -23.56 16 13 C 0.32 13.18 7.59 136.55 1.04 14.22 16 14 N -0.56 -26.88 8.36 -341.18 -2.85 -29.74 16 15 C 0.08 4.35 5.18 86.38 0.45 4.80 16 16 C 0.07 4.05 0.57 -52.93 -0.03 4.02 16 17 C -0.09 -5.20 8.09 71.98 0.58 -4.62 16 18 C -0.10 -5.82 8.09 71.98 0.58 -5.24 16 19 C -0.53 -31.96 8.01 25.60 0.21 -31.76 16 20 H 0.04 2.57 7.74 -2.91 -0.02 2.55 16 21 C 0.02 1.19 5.15 84.65 0.44 1.62 16 22 N -0.91 -54.91 9.35 21.45 0.20 -54.71 16 23 Si 0.95 46.50 29.54 68.60 2.03 48.53 16 24 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 25 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 26 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 27 C -0.20 -5.90 6.06 -18.37 -0.11 -6.01 16 28 C -0.08 -1.96 9.47 71.24 0.67 -1.28 16 29 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.10 0.56 5.98 -2.39 -0.01 0.54 16 32 H 0.18 0.20 6.45 -2.91 -0.02 0.18 16 33 H 0.20 0.77 8.06 -2.91 -0.02 0.75 16 34 H 0.17 3.26 8.06 -2.91 -0.02 3.24 16 35 H 0.12 4.07 7.61 -2.91 -0.02 4.04 16 36 H 0.03 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.03 1.70 6.70 -2.38 -0.02 1.69 16 38 H 0.01 0.29 7.60 -2.39 -0.02 0.28 16 39 H 0.05 3.40 6.07 -2.39 -0.01 3.38 16 40 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 41 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.05 3.27 6.07 -2.38 -0.01 3.25 16 43 H 0.02 1.23 7.60 -2.39 -0.02 1.22 16 44 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 45 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.10 1.58 5.99 -2.39 -0.01 1.57 16 47 H 0.05 1.50 7.71 -2.39 -0.02 1.48 16 Total: -1.00 -87.16 377.58 3.39 -83.77 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: 0.37 Total: 7.09 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: 8.05 Total: -8.84 kcal Atomic # 7 Polarization: -123.49 SS G_CDS: -7.06 Total: -130.54 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -87.16 3.39 -83.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413412799.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.451 kcal (2) G-P(sol) polarization free energy of solvation -87.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds