Wall clock time and date at job start Tue Mar 31 2020 14:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99921 * 2 1 4 4 C 1.50703 * 109.47105 * 90.00269 * 3 2 1 5 5 H 1.07998 * 119.99979 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00153 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00151 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 119.99910 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.46944 * 270.00182 * 8 6 4 10 10 H 1.48498 * 109.47188 * 29.99967 * 8 6 4 11 11 H 1.48497 * 109.46978 * 150.00231 * 8 6 4 12 12 C 1.34775 * 120.00387 * 180.02562 * 2 1 3 13 13 O 1.21272 * 120.00219 * 180.02562 * 12 2 1 14 14 C 1.50698 * 119.99589 * 359.97438 * 12 2 1 15 15 C 1.53003 * 109.47118 * 180.02562 * 14 12 2 16 16 N 1.46900 * 109.47249 * 179.97438 * 15 14 12 17 17 C 1.46469 * 110.99749 * 299.96201 * 16 15 14 18 18 C 1.53252 * 109.85753 * 162.23490 * 17 16 15 19 19 S 1.81895 * 108.50747 * 62.00322 * 18 17 16 20 20 C 1.81905 * 101.91383 * 308.69767 * 19 18 17 21 21 C 1.46467 * 110.99820 * 173.98643 * 16 15 14 22 22 H 1.08998 * 109.40674 * 77.64684 * 21 16 15 23 23 C 1.52993 * 109.40491 * 317.80043 * 21 16 15 24 24 C 1.53782 * 113.61949 * 281.11670 * 23 21 16 25 25 C 1.53777 * 87.08503 * 220.01934 * 24 23 21 26 26 C 1.53785 * 113.61409 * 183.62034 * 23 21 16 27 27 H 1.08999 * 109.47437 * 89.99472 * 1 2 3 28 28 H 1.09002 * 109.46710 * 209.99865 * 1 2 3 29 29 H 1.09010 * 109.46966 * 329.99604 * 1 2 3 30 30 H 1.09001 * 109.47026 * 330.00480 * 3 2 1 31 31 H 1.08998 * 109.47483 * 210.00463 * 3 2 1 32 32 H 0.96995 * 120.00315 * 180.02562 * 7 6 4 33 33 H 1.09003 * 109.47310 * 299.99906 * 14 12 2 34 34 H 1.08994 * 109.47464 * 60.00131 * 14 12 2 35 35 H 1.08993 * 109.46918 * 300.00185 * 15 14 12 36 36 H 1.09001 * 109.46841 * 60.00034 * 15 14 12 37 37 H 1.08997 * 109.41297 * 282.35057 * 17 16 15 38 38 H 1.09002 * 109.40873 * 42.11872 * 17 16 15 39 39 H 1.09003 * 109.63154 * 302.30059 * 18 17 16 40 40 H 1.09002 * 109.79416 * 181.80712 * 18 17 16 41 41 H 1.09001 * 109.62862 * 291.59511 * 20 19 18 42 42 H 1.08997 * 109.79117 * 171.10492 * 20 19 18 43 43 H 1.09007 * 112.85153 * 52.42987 * 23 21 16 44 44 H 1.09002 * 113.61282 * 334.57130 * 24 23 21 45 45 H 1.09003 * 113.61012 * 105.46879 * 24 23 21 46 46 H 1.09005 * 113.61566 * 270.88522 * 25 24 23 47 47 H 1.09000 * 113.69117 * 139.98940 * 25 24 23 48 48 H 1.09005 * 113.61409 * 254.52912 * 26 23 21 49 49 H 1.08994 * 113.61862 * 25.35256 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 1.4208 5 1 2.0982 1.0958 2.2417 6 6 3.1260 2.8780 1.6728 7 7 3.3457 3.2573 2.9128 8 14 3.7329 3.9293 0.2530 9 1 5.1065 3.5082 -0.1229 10 1 2.8270 3.7593 -0.9113 11 1 3.7477 5.3560 0.6646 12 6 2.1390 -1.1671 -0.0005 13 8 3.3517 -1.1671 -0.0001 14 6 1.3855 -2.4722 -0.0005 15 6 2.3797 -3.6352 -0.0005 16 7 1.6452 -4.9074 0.0001 17 6 0.7918 -5.0201 1.1851 18 6 -0.2697 -6.1025 0.9611 19 16 0.5729 -7.6960 0.7175 20 6 1.7814 -7.2874 -0.5793 21 6 2.5605 -6.0419 -0.1431 22 1 3.0488 -6.2361 0.8118 23 6 3.6187 -5.7113 -1.1974 24 6 3.1178 -5.8664 -2.6430 25 6 4.4926 -6.4721 -2.9713 26 6 4.5815 -6.8743 -1.4896 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6084 2.0284 -0.5138 31 1 3.1499 1.1385 -0.5139 32 1 3.8218 4.0836 3.0901 33 1 0.7591 -2.5302 0.8897 34 1 0.7585 -2.5298 -0.8902 35 1 3.0063 -3.5774 -0.8904 36 1 3.0063 -3.5774 0.8895 37 1 1.4029 -5.2853 2.0478 38 1 0.3011 -4.0645 1.3703 39 1 -0.8584 -5.8606 0.0761 40 1 -0.9241 -6.1634 1.8307 41 1 1.2600 -7.0843 -1.5148 42 1 2.4704 -8.1206 -0.7175 43 1 4.1234 -4.7638 -1.0080 44 1 2.2937 -6.5723 -2.7462 45 1 2.9282 -4.9168 -3.1436 46 1 5.2360 -5.7323 -3.2683 47 1 4.4455 -7.3218 -3.6523 48 1 5.5737 -6.7384 -1.0592 49 1 4.1583 -7.8557 -1.2761 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419372456.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:28 Heat of formation + Delta-G solvation = 2.629283 kcal Electronic energy + Delta-G solvation = -26629.042512 eV Core-core repulsion = 23104.484758 eV Total energy + Delta-G solvation = -3524.557754 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.34282 -39.09387 -37.32004 -34.97172 -32.77069 -32.27480 -31.78360 -29.36349 -27.93240 -26.20377 -25.91488 -25.84464 -23.76135 -23.03492 -21.72546 -20.70908 -18.83303 -18.45852 -17.43767 -16.99258 -16.51023 -16.04733 -15.55461 -15.48591 -15.20446 -15.16392 -14.78506 -14.37216 -14.13026 -13.94968 -13.75821 -13.16507 -12.80520 -12.68925 -12.57464 -12.41987 -12.27307 -12.08675 -12.05727 -11.95808 -11.84230 -11.65024 -11.55514 -11.35517 -10.99696 -10.88894 -10.54046 -10.46581 -10.36414 -10.25699 -10.16130 -9.85604 -9.57161 -9.04766 -8.61409 -8.53837 -7.89504 -7.73376 -6.11235 -4.10202 1.56810 2.28891 3.27096 3.30900 3.32991 3.34693 3.38523 3.93036 4.31510 4.37318 4.44035 4.48477 4.60336 4.72986 4.74971 4.86862 4.89034 4.95943 5.03615 5.09221 5.18852 5.23028 5.28018 5.33164 5.44721 5.50840 5.54282 5.55364 5.60922 5.63690 5.68678 5.72282 5.78994 5.81700 5.85449 5.98891 6.07204 6.09507 6.13601 6.30796 6.66697 6.82261 6.88627 6.92798 7.30303 7.58492 8.21576 8.44254 8.89501 8.95354 9.49002 11.02175 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016477 B = 0.002964 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.897349 B = 9445.977603 C =10428.793122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.598 5.598 3 C 0.215 3.785 4 C -0.529 4.529 5 H 0.073 0.927 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.266 1.266 11 H -0.285 1.285 12 C 0.507 3.493 13 O -0.544 6.544 14 C -0.137 4.137 15 C 0.071 3.929 16 N -0.545 5.545 17 C 0.046 3.954 18 C -0.070 4.070 19 S -0.284 6.284 20 C -0.069 4.069 21 C 0.099 3.901 22 H 0.056 0.944 23 C -0.113 4.113 24 C -0.131 4.131 25 C -0.143 4.143 26 C -0.138 4.138 27 H 0.045 0.955 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.029 0.971 31 H 0.036 0.964 32 H 0.265 0.735 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.045 0.955 37 H 0.049 0.951 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.096 0.904 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.085 0.915 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.374 -21.480 -9.680 24.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.330 5.330 3 C 0.095 3.905 4 C -0.568 4.568 5 H 0.091 0.909 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.191 1.191 11 H -0.210 1.210 12 C 0.294 3.706 13 O -0.422 6.422 14 C -0.178 4.178 15 C -0.056 4.056 16 N -0.270 5.270 17 C -0.083 4.083 18 C -0.219 4.219 19 S -0.057 6.057 20 C -0.217 4.217 21 C -0.011 4.011 22 H 0.074 0.926 23 C -0.133 4.133 24 C -0.168 4.168 25 C -0.181 4.181 26 C -0.176 4.176 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.124 0.876 41 H 0.114 0.886 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.103 0.897 45 H 0.087 0.913 46 H 0.098 0.902 47 H 0.084 0.916 48 H 0.086 0.914 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.173 -22.320 -9.430 25.004 hybrid contribution 0.870 1.858 -0.340 2.079 sum -5.303 -20.463 -9.770 23.287 Atomic orbital electron populations 1.21660 0.80926 1.02945 1.00472 1.47840 1.06293 1.07166 1.71718 1.19658 0.92451 0.80101 0.98327 1.21325 1.37055 1.07135 0.91265 0.90852 1.24867 0.95223 0.97365 0.95601 1.69894 1.41478 1.23562 1.18673 0.86836 0.80125 0.79745 0.82902 1.19897 1.19060 1.21044 1.20287 0.88041 0.85110 0.77182 1.90664 1.13985 1.87336 1.50176 1.21723 0.99361 0.92661 1.04031 1.21900 0.94814 0.85900 1.02946 1.61174 1.23759 1.02358 1.39725 1.22355 0.94882 0.99384 0.91693 1.23499 0.99487 0.93138 1.05787 1.86910 1.45948 1.19755 1.53038 1.23748 0.98637 1.00259 0.99088 1.21620 0.91458 0.89623 0.98351 0.92613 1.22868 0.95930 0.99884 0.94602 1.22972 0.96870 1.01487 0.95483 1.22812 0.98111 1.00800 0.96343 1.23017 0.99650 0.98183 0.96772 0.93610 0.92176 0.90614 0.95271 0.94582 0.92540 0.89390 0.88760 0.88858 0.93670 0.93291 0.88912 0.88995 0.87598 0.88579 0.87569 0.87716 0.89675 0.91344 0.90167 0.91603 0.91370 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 10.24 59.85 0.61 1.85 16 2 N -0.60 -12.04 2.86 -182.95 -0.52 -12.57 16 3 C 0.22 5.24 4.23 -5.19 -0.02 5.21 16 4 C -0.53 -15.18 9.94 -34.44 -0.34 -15.52 16 5 H 0.07 2.31 8.06 -52.49 -0.42 1.88 16 6 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 7 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 8 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 9 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 C 0.51 9.91 7.67 -10.99 -0.08 9.83 16 13 O -0.54 -12.93 15.56 5.56 0.09 -12.85 16 14 C -0.14 -1.86 4.08 -27.88 -0.11 -1.98 16 15 C 0.07 0.93 3.62 -3.82 -0.01 0.92 16 16 N -0.55 -5.78 4.36 -227.04 -0.99 -6.77 16 17 C 0.05 0.46 5.28 -3.93 -0.02 0.44 16 18 C -0.07 -0.62 6.69 37.29 0.25 -0.37 16 19 S -0.28 -2.86 22.40 -107.50 -2.41 -5.27 16 20 C -0.07 -0.61 5.04 37.29 0.19 -0.42 16 21 C 0.10 0.98 2.03 -67.82 -0.14 0.84 16 22 H 0.06 0.62 7.91 -51.93 -0.41 0.21 16 23 C -0.11 -1.07 2.83 -89.81 -0.25 -1.32 16 24 C -0.13 -1.12 7.37 -25.92 -0.19 -1.31 16 25 C -0.14 -1.13 8.08 -25.92 -0.21 -1.34 16 26 C -0.14 -1.11 7.45 -25.91 -0.19 -1.30 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.72 6.44 -51.93 -0.33 0.39 16 29 H 0.08 1.18 8.07 -51.92 -0.42 0.76 16 30 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 31 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 32 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.09 1.08 5.33 -51.93 -0.28 0.80 16 34 H 0.09 1.11 8.11 -51.93 -0.42 0.69 16 35 H 0.09 1.28 5.60 -51.93 -0.29 0.99 16 36 H 0.04 0.68 8.10 -51.93 -0.42 0.26 16 37 H 0.05 0.53 7.91 -51.93 -0.41 0.12 16 38 H 0.09 0.88 5.56 -51.93 -0.29 0.59 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.10 0.84 6.19 -51.93 -0.32 0.52 16 42 H 0.11 0.83 6.20 -51.93 -0.32 0.51 16 43 H 0.10 1.18 5.96 -51.93 -0.31 0.87 16 44 H 0.08 0.68 5.59 -51.93 -0.29 0.39 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.08 0.58 6.13 -51.93 -0.32 0.26 16 LS Contribution 377.85 15.07 5.69 5.69 Total: -1.00 -33.13 377.85 -10.77 -43.91 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -8.11 Total: 0.36 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -0.63 Total: -2.48 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: -0.74 Total: -46.21 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.09 Total: -12.85 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Atomic # 16 Polarization: -2.86 SS G_CDS: -2.41 Total: -5.27 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.13 -10.77 -43.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419372456.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.538 kcal (2) G-P(sol) polarization free energy of solvation -33.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds