Wall clock time and date at job start Tue Mar 31 2020 14:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99921 * 2 1 4 4 C 1.50703 * 109.47105 * 90.00269 * 3 2 1 5 5 H 1.07998 * 119.99979 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00153 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00151 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 119.99910 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.46944 * 270.00182 * 8 6 4 10 10 H 1.48498 * 109.47188 * 29.99967 * 8 6 4 11 11 H 1.48497 * 109.46978 * 150.00231 * 8 6 4 12 12 C 1.34775 * 120.00387 * 180.02562 * 2 1 3 13 13 O 1.21272 * 120.00219 * 180.02562 * 12 2 1 14 14 C 1.50698 * 119.99589 * 359.97438 * 12 2 1 15 15 C 1.53003 * 109.47118 * 180.02562 * 14 12 2 16 16 N 1.46900 * 109.47249 * 179.97438 * 15 14 12 17 17 C 1.46469 * 110.99749 * 299.96201 * 16 15 14 18 18 C 1.53252 * 109.85753 * 162.23490 * 17 16 15 19 19 S 1.81895 * 108.50747 * 62.00322 * 18 17 16 20 20 C 1.81905 * 101.91383 * 308.69767 * 19 18 17 21 21 C 1.46467 * 110.99820 * 173.98643 * 16 15 14 22 22 H 1.08998 * 109.40674 * 77.64684 * 21 16 15 23 23 C 1.52993 * 109.40491 * 317.80043 * 21 16 15 24 24 C 1.53782 * 113.61949 * 281.11670 * 23 21 16 25 25 C 1.53777 * 87.08503 * 220.01934 * 24 23 21 26 26 C 1.53785 * 113.61409 * 183.62034 * 23 21 16 27 27 H 1.08999 * 109.47437 * 89.99472 * 1 2 3 28 28 H 1.09002 * 109.46710 * 209.99865 * 1 2 3 29 29 H 1.09010 * 109.46966 * 329.99604 * 1 2 3 30 30 H 1.09001 * 109.47026 * 330.00480 * 3 2 1 31 31 H 1.08998 * 109.47483 * 210.00463 * 3 2 1 32 32 H 0.96995 * 120.00315 * 180.02562 * 7 6 4 33 33 H 1.09003 * 109.47310 * 299.99906 * 14 12 2 34 34 H 1.08994 * 109.47464 * 60.00131 * 14 12 2 35 35 H 1.08993 * 109.46918 * 300.00185 * 15 14 12 36 36 H 1.09001 * 109.46841 * 60.00034 * 15 14 12 37 37 H 1.08997 * 109.41297 * 282.35057 * 17 16 15 38 38 H 1.09002 * 109.40873 * 42.11872 * 17 16 15 39 39 H 1.09003 * 109.63154 * 302.30059 * 18 17 16 40 40 H 1.09002 * 109.79416 * 181.80712 * 18 17 16 41 41 H 1.09001 * 109.62862 * 291.59511 * 20 19 18 42 42 H 1.08997 * 109.79117 * 171.10492 * 20 19 18 43 43 H 1.09007 * 112.85153 * 52.42987 * 23 21 16 44 44 H 1.09002 * 113.61282 * 334.57130 * 24 23 21 45 45 H 1.09003 * 113.61012 * 105.46879 * 24 23 21 46 46 H 1.09005 * 113.61566 * 270.88522 * 25 24 23 47 47 H 1.09000 * 113.69117 * 139.98940 * 25 24 23 48 48 H 1.09005 * 113.61409 * 254.52912 * 26 23 21 49 49 H 1.08994 * 113.61862 * 25.35256 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 1.4208 5 1 2.0982 1.0958 2.2417 6 6 3.1260 2.8780 1.6728 7 7 3.3457 3.2573 2.9128 8 14 3.7329 3.9293 0.2530 9 1 5.1065 3.5082 -0.1229 10 1 2.8270 3.7593 -0.9113 11 1 3.7477 5.3560 0.6646 12 6 2.1390 -1.1671 -0.0005 13 8 3.3517 -1.1671 -0.0001 14 6 1.3855 -2.4722 -0.0005 15 6 2.3797 -3.6352 -0.0005 16 7 1.6452 -4.9074 0.0001 17 6 0.7918 -5.0201 1.1851 18 6 -0.2697 -6.1025 0.9611 19 16 0.5729 -7.6960 0.7175 20 6 1.7814 -7.2874 -0.5793 21 6 2.5605 -6.0419 -0.1431 22 1 3.0488 -6.2361 0.8118 23 6 3.6187 -5.7113 -1.1974 24 6 3.1178 -5.8664 -2.6430 25 6 4.4926 -6.4721 -2.9713 26 6 4.5815 -6.8743 -1.4896 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6084 2.0284 -0.5138 31 1 3.1499 1.1385 -0.5139 32 1 3.8218 4.0836 3.0901 33 1 0.7591 -2.5302 0.8897 34 1 0.7585 -2.5298 -0.8902 35 1 3.0063 -3.5774 -0.8904 36 1 3.0063 -3.5774 0.8895 37 1 1.4029 -5.2853 2.0478 38 1 0.3011 -4.0645 1.3703 39 1 -0.8584 -5.8606 0.0761 40 1 -0.9241 -6.1634 1.8307 41 1 1.2600 -7.0843 -1.5148 42 1 2.4704 -8.1206 -0.7175 43 1 4.1234 -4.7638 -1.0080 44 1 2.2937 -6.5723 -2.7462 45 1 2.9282 -4.9168 -3.1436 46 1 5.2360 -5.7323 -3.2683 47 1 4.4455 -7.3218 -3.6523 48 1 5.5737 -6.7384 -1.0592 49 1 4.1583 -7.8557 -1.2761 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419372456.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:27 Heat of formation + Delta-G solvation = -18.561174 kcal Electronic energy + Delta-G solvation = -26629.961399 eV Core-core repulsion = 23104.484758 eV Total energy + Delta-G solvation = -3525.476642 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.25370 -40.49720 -38.19105 -36.64485 -34.74494 -33.51883 -32.54510 -30.88137 -29.29551 -27.32215 -26.93041 -26.53205 -25.18246 -23.99688 -23.12444 -21.57702 -19.95407 -19.57000 -19.16534 -18.41072 -17.68587 -17.20302 -16.97161 -16.45579 -16.26789 -16.20822 -16.07072 -15.49447 -15.11420 -15.03926 -14.76557 -14.58115 -14.15209 -14.05102 -13.69043 -13.64034 -13.37090 -13.30710 -13.28374 -12.88900 -12.83419 -12.77218 -12.66996 -12.47537 -12.38601 -12.30674 -12.04411 -11.77496 -11.74296 -11.24828 -11.13044 -10.97047 -10.85052 -10.67127 -10.60561 -9.47884 -9.39114 -8.67889 -8.35912 -6.41183 0.84157 1.31576 1.35595 1.44168 1.56454 1.79595 2.22135 2.29564 2.72377 2.98692 3.55241 3.64027 3.74522 3.81851 3.86780 3.95641 3.99171 4.02985 4.08762 4.18421 4.28789 4.29305 4.37440 4.44822 4.54894 4.55919 4.67050 4.76777 4.78754 4.81141 4.85744 4.87777 4.92680 4.94309 4.94338 4.99401 4.99908 5.02282 5.11014 5.20428 5.38310 5.44408 5.60921 5.61732 5.85989 6.01627 6.21864 6.60143 6.69901 7.19822 7.41539 8.81091 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016477 B = 0.002964 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.897349 B = 9445.977603 C =10428.793122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.608 5.608 3 C 0.223 3.777 4 C -0.537 4.537 5 H 0.027 0.973 6 C 0.010 3.990 7 N -0.946 5.946 8 Si 0.949 3.051 9 H -0.277 1.277 10 H -0.237 1.237 11 H -0.275 1.275 12 C 0.496 3.504 13 O -0.598 6.598 14 C -0.119 4.119 15 C 0.082 3.918 16 N -0.534 5.534 17 C 0.043 3.957 18 C -0.059 4.059 19 S -0.315 6.315 20 C -0.056 4.056 21 C 0.101 3.899 22 H 0.039 0.961 23 C -0.118 4.118 24 C -0.125 4.125 25 C -0.140 4.140 26 C -0.134 4.134 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.018 0.982 32 H 0.268 0.732 33 H 0.108 0.892 34 H 0.126 0.874 35 H 0.085 0.915 36 H 0.014 0.986 37 H 0.035 0.965 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.120 0.880 41 H 0.104 0.896 42 H 0.119 0.881 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.058 0.942 46 H 0.072 0.928 47 H 0.081 0.919 48 H 0.062 0.938 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.281 -22.515 -12.109 26.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.339 5.339 3 C 0.100 3.900 4 C -0.576 4.576 5 H 0.046 0.954 6 C -0.188 4.188 7 N -0.586 5.586 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.160 1.160 11 H -0.200 1.200 12 C 0.285 3.715 13 O -0.479 6.479 14 C -0.159 4.159 15 C -0.046 4.046 16 N -0.259 5.259 17 C -0.086 4.086 18 C -0.207 4.207 19 S -0.088 6.088 20 C -0.204 4.204 21 C -0.009 4.009 22 H 0.057 0.943 23 C -0.138 4.138 24 C -0.162 4.162 25 C -0.177 4.177 26 C -0.172 4.172 27 H 0.099 0.901 28 H 0.109 0.891 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.036 0.964 32 H 0.077 0.923 33 H 0.126 0.874 34 H 0.144 0.856 35 H 0.103 0.897 36 H 0.032 0.968 37 H 0.053 0.947 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.138 0.862 41 H 0.122 0.878 42 H 0.137 0.863 43 H 0.098 0.902 44 H 0.116 0.884 45 H 0.076 0.924 46 H 0.091 0.909 47 H 0.100 0.900 48 H 0.081 0.919 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.144 -23.383 -11.867 27.458 hybrid contribution 1.454 2.122 0.529 2.626 sum -6.690 -21.261 -11.338 25.007 Atomic orbital electron populations 1.21984 0.77475 1.04005 1.03037 1.47977 1.08533 1.05940 1.71464 1.19322 0.92750 0.82717 0.95186 1.21576 1.36823 1.06696 0.92464 0.95418 1.25878 0.95299 0.99006 0.98656 1.70049 1.42747 1.24495 1.21320 0.85699 0.79546 0.77739 0.79871 1.20261 1.15980 1.19975 1.21331 0.87794 0.86702 0.75623 1.90635 1.16624 1.88224 1.52449 1.21655 0.98945 0.88966 1.06330 1.21691 0.94534 0.87236 1.01170 1.61232 1.23299 1.01431 1.39926 1.22430 0.94936 1.00376 0.90848 1.23496 0.98898 0.91420 1.06922 1.87060 1.46681 1.21159 1.53890 1.23706 0.98302 0.99752 0.98641 1.21622 0.91588 0.89910 0.97748 0.94332 1.22807 0.96282 0.99456 0.95266 1.22959 0.97653 1.01348 0.94254 1.22788 0.97416 1.01082 0.96406 1.23028 0.99074 0.98179 0.96883 0.90115 0.89077 0.91752 0.93188 0.96431 0.92258 0.87439 0.85550 0.89716 0.96773 0.94687 0.88027 0.87986 0.86169 0.87811 0.86338 0.90229 0.88396 0.92360 0.90892 0.90028 0.91889 0.88605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.06 10.24 127.77 1.31 3.37 16 2 N -0.61 -23.96 2.86 -851.12 -2.43 -26.39 16 3 C 0.22 10.79 4.23 85.63 0.36 11.15 16 4 C -0.54 -31.67 9.94 25.60 0.25 -31.42 16 5 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 6 C 0.01 0.56 5.47 84.65 0.46 1.03 16 7 N -0.95 -60.06 13.96 21.45 0.30 -59.76 16 8 Si 0.95 44.47 27.47 68.60 1.88 46.35 16 9 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 10 H -0.24 -9.90 6.54 99.48 0.65 -9.24 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 C 0.50 19.34 7.67 87.66 0.67 20.01 16 13 O -0.60 -29.46 15.56 -3.01 -0.05 -29.51 16 14 C -0.12 -3.03 4.08 29.85 0.12 -2.90 16 15 C 0.08 2.13 3.62 86.30 0.31 2.44 16 16 N -0.53 -10.67 4.36 -872.23 -3.80 -14.47 16 17 C 0.04 0.79 5.28 86.47 0.46 1.24 16 18 C -0.06 -0.89 6.69 72.07 0.48 -0.41 16 19 S -0.32 -5.80 22.40 -56.49 -1.27 -7.06 16 20 C -0.06 -0.87 5.04 72.07 0.36 -0.51 16 21 C 0.10 1.92 2.03 45.08 0.09 2.01 16 22 H 0.04 0.87 7.91 -2.39 -0.02 0.85 16 23 C -0.12 -2.19 2.83 -10.27 -0.03 -2.22 16 24 C -0.12 -1.96 7.37 31.12 0.23 -1.73 16 25 C -0.14 -2.00 8.08 31.12 0.25 -1.75 16 26 C -0.13 -2.02 7.45 31.12 0.23 -1.78 16 27 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.09 1.85 6.44 -2.39 -0.02 1.84 16 29 H 0.06 1.88 8.07 -2.38 -0.02 1.86 16 30 H 0.05 2.21 7.13 -2.39 -0.02 2.20 16 31 H 0.02 0.92 6.85 -2.39 -0.02 0.90 16 32 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 33 H 0.11 2.35 5.33 -2.39 -0.01 2.33 16 34 H 0.13 2.48 8.11 -2.39 -0.02 2.46 16 35 H 0.08 2.38 5.60 -2.39 -0.01 2.37 16 36 H 0.01 0.45 8.10 -2.39 -0.02 0.43 16 37 H 0.03 0.75 7.91 -2.39 -0.02 0.73 16 38 H 0.10 1.66 5.56 -2.39 -0.01 1.65 16 39 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.10 1.50 6.19 -2.39 -0.01 1.49 16 42 H 0.12 1.56 6.20 -2.39 -0.01 1.55 16 43 H 0.08 1.90 5.96 -2.38 -0.01 1.89 16 44 H 0.10 1.29 5.59 -2.39 -0.01 1.28 16 45 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 47 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 49 H 0.10 1.17 6.13 -2.39 -0.01 1.15 16 Total: -1.00 -76.29 377.85 1.09 -75.20 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.88 Total: 17.11 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: 5.57 Total: -1.48 kcal Atomic # 7 Polarization: -94.68 SS G_CDS: -5.93 Total: -100.61 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.05 Total: -29.51 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.35 kcal Atomic # 16 Polarization: -5.80 SS G_CDS: -1.27 Total: -7.06 kcal Total: -76.29 1.09 -75.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419372456.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.639 kcal (2) G-P(sol) polarization free energy of solvation -76.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds