Wall clock time and date at job start Tue Mar 31 2020 14:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46494 * 120.00444 * 2 1 4 4 C 1.50694 * 109.47248 * 270.27463 * 3 2 1 5 5 C 1.39377 * 119.50817 * 89.99863 * 4 3 2 6 6 C 1.36096 * 120.99335 * 179.97438 * 5 4 3 7 7 C 1.40536 * 119.65018 * 0.02562 * 6 5 4 8 8 C 1.40541 * 121.28974 * 180.02562 * 7 6 5 9 9 C 1.36095 * 119.65723 * 179.97438 * 8 7 6 10 10 C 1.39369 * 120.98785 * 0.02562 * 9 8 7 11 11 C 1.36097 * 120.99183 * 0.02562 * 10 9 8 12 12 C 1.40543 * 119.65039 * 359.95978 * 11 10 9 13 13 C 1.36093 * 119.50869 * 269.72691 * 4 3 2 14 14 C 1.34784 * 119.99864 * 180.27290 * 2 1 3 15 15 O 1.21279 * 119.99925 * 179.72608 * 14 2 1 16 16 C 1.50700 * 119.99961 * 359.72839 * 14 2 1 17 17 H 1.09000 * 109.47153 * 39.99352 * 16 14 2 18 18 N 1.46893 * 109.47248 * 160.00051 * 16 14 2 19 19 C 1.53005 * 109.47080 * 280.00010 * 16 14 2 20 20 C 1.52996 * 109.47310 * 174.99812 * 19 16 14 21 21 C 1.50699 * 109.47433 * 180.02562 * 20 19 16 22 22 H 1.07999 * 119.99582 * 359.97438 * 21 20 19 23 23 C 1.37873 * 120.00248 * 180.02562 * 21 20 19 24 24 N 1.31512 * 120.00360 * 180.02562 * 23 21 20 25 25 Si 1.86806 * 120.00005 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.46752 * 90.00219 * 25 23 21 27 27 H 1.48500 * 109.47325 * 210.00105 * 25 23 21 28 28 H 1.48499 * 109.47124 * 330.00719 * 25 23 21 29 29 H 1.09000 * 109.47297 * 269.72722 * 1 2 3 30 30 H 1.09002 * 109.47192 * 29.72648 * 1 2 3 31 31 H 1.08996 * 109.47342 * 149.72358 * 1 2 3 32 32 H 1.09003 * 109.47006 * 30.27410 * 3 2 1 33 33 H 1.09004 * 109.47665 * 150.27102 * 3 2 1 34 34 H 1.08003 * 119.50626 * 359.97438 * 5 4 3 35 35 H 1.07999 * 120.17279 * 179.97438 * 6 5 4 36 36 H 1.08005 * 120.17237 * 359.96324 * 8 7 6 37 37 H 1.07994 * 119.50526 * 180.02562 * 9 8 7 38 38 H 1.08009 * 119.50666 * 179.97438 * 10 9 8 39 39 H 1.07996 * 120.17600 * 179.97438 * 11 10 9 40 40 H 1.08005 * 120.16762 * 359.97277 * 13 4 3 41 41 H 1.00899 * 110.99966 * 59.99880 * 18 16 14 42 42 H 1.00906 * 111.00310 * 183.95601 * 18 16 14 43 43 H 1.08999 * 109.46842 * 294.99900 * 19 16 14 44 44 H 1.08999 * 109.46967 * 54.99875 * 19 16 14 45 45 H 1.09005 * 109.47136 * 300.00285 * 20 19 16 46 46 H 1.09002 * 109.46992 * 59.99600 * 20 19 16 47 47 H 0.96999 * 120.00622 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4428 1.7070 -1.4207 5 6 1.5041 2.5133 -2.0621 6 6 1.6953 2.9272 -3.3445 7 6 2.8553 2.5371 -4.0353 8 6 3.0879 2.9450 -5.3600 9 6 4.2230 2.5481 -5.9974 10 6 5.1611 1.7410 -5.3563 11 6 4.9691 1.3258 -4.0745 12 6 3.8089 1.7158 -3.3838 13 6 3.5802 1.3144 -2.0565 14 6 2.1388 -1.1673 -0.0056 15 8 3.3516 -1.1673 -0.0106 16 6 1.3853 -2.4724 -0.0056 17 1 0.5191 -2.3918 -0.6623 18 7 2.2655 -3.5460 -0.4854 19 6 0.9192 -2.7922 1.4162 20 6 0.0491 -4.0505 1.3968 21 6 -0.4105 -4.3652 2.7971 22 1 -0.1115 -3.7313 3.6187 23 6 -1.2117 -5.4629 3.0294 24 7 -1.6132 -5.7372 4.2513 25 14 -1.7282 -6.5598 1.6082 26 1 -0.7259 -7.6405 1.4275 27 1 -3.0548 -7.1590 1.9021 28 1 -1.8144 -5.7518 0.3652 29 1 -0.3634 -0.0049 1.0276 30 1 -0.3634 0.8924 -0.5096 31 1 -0.3634 -0.8874 -0.5181 32 1 1.6106 2.0271 0.5181 33 1 3.1521 1.1371 0.5096 34 1 0.6116 2.8142 -1.5336 35 1 0.9590 3.5514 -3.8289 36 1 2.3694 3.5700 -5.8696 37 1 4.3994 2.8633 -7.0151 38 1 6.0535 1.4397 -5.8850 39 1 5.7045 0.7003 -3.5906 40 1 4.3011 0.6936 -1.5452 41 1 3.0765 -3.6407 0.1073 42 1 1.7652 -4.4194 -0.5560 43 1 1.7871 -2.9603 2.0539 44 1 0.3391 -1.9554 1.8052 45 1 -0.8187 -3.8824 0.7591 46 1 0.6292 -4.8873 1.0077 47 1 -2.1773 -6.5093 4.4147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424060885.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:29 Heat of formation + Delta-G solvation = 1.530290 kcal Electronic energy + Delta-G solvation = -26942.956669 eV Core-core repulsion = 23282.907308 eV Total energy + Delta-G solvation = -3660.049362 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.68681 -39.80566 -37.17495 -35.64222 -35.25583 -32.98758 -32.79378 -31.19086 -30.32263 -29.66480 -27.63501 -26.92780 -25.69116 -23.68577 -23.28720 -22.14261 -21.91528 -20.33660 -18.98638 -17.61525 -17.48857 -16.97260 -16.66859 -16.41615 -16.14431 -15.09382 -14.89513 -14.60810 -14.36078 -14.22732 -14.17226 -13.79333 -13.67102 -13.53733 -13.42401 -13.00303 -12.85246 -12.67470 -12.54463 -12.47883 -12.17478 -11.81745 -11.75461 -11.43254 -11.31644 -11.19270 -10.98475 -10.96122 -10.34041 -10.14057 -10.10115 -9.87447 -9.39774 -9.32374 -8.77389 -8.64543 -8.62682 -8.30227 -8.04215 -6.12609 -4.12152 0.36562 0.79523 1.89207 2.66457 2.86627 3.21343 3.24301 3.32637 3.33798 3.97940 4.36730 4.38634 4.56264 4.61819 4.67682 4.71691 4.89005 5.01487 5.06150 5.08589 5.08759 5.18868 5.20385 5.21934 5.33666 5.35694 5.51847 5.60758 5.61988 5.66624 5.79460 5.80195 5.89397 6.05075 6.06528 6.14822 6.26888 6.31539 6.37103 6.46436 6.51409 6.65280 6.67416 6.82873 7.08108 7.20921 7.27872 7.51648 7.66069 7.78147 8.36173 8.43772 8.91348 9.48695 11.00555 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.021550 B = 0.002470 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.991213 B =11332.597366 C =11641.988306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.614 5.614 3 C 0.154 3.846 4 C -0.105 4.105 5 C -0.099 4.099 6 C -0.115 4.115 7 C -0.050 4.050 8 C -0.110 4.110 9 C -0.117 4.117 10 C -0.123 4.123 11 C -0.098 4.098 12 C -0.054 4.054 13 C -0.075 4.075 14 C 0.529 3.471 15 O -0.535 6.535 16 C 0.071 3.929 17 H 0.097 0.903 18 N -0.831 5.831 19 C -0.129 4.129 20 C -0.010 4.010 21 C -0.523 4.523 22 H 0.071 0.929 23 C 0.067 3.933 24 N -0.901 5.901 25 Si 0.880 3.120 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.265 1.265 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.135 0.865 41 H 0.347 0.653 42 H 0.350 0.650 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.018 0.982 46 H 0.011 0.989 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.749 19.376 -17.938 27.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.348 5.348 3 C 0.032 3.968 4 C -0.106 4.106 5 C -0.117 4.117 6 C -0.133 4.133 7 C -0.050 4.050 8 C -0.128 4.128 9 C -0.135 4.135 10 C -0.141 4.141 11 C -0.116 4.116 12 C -0.054 4.054 13 C -0.094 4.094 14 C 0.318 3.682 15 O -0.410 6.410 16 C -0.044 4.044 17 H 0.115 0.885 18 N -0.363 5.363 19 C -0.169 4.169 20 C -0.047 4.047 21 C -0.561 4.561 22 H 0.089 0.911 23 C -0.135 4.135 24 N -0.539 5.539 25 Si 0.708 3.292 26 H -0.202 1.202 27 H -0.213 1.213 28 H -0.190 1.190 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.152 0.848 41 H 0.161 0.839 42 H 0.164 0.836 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.036 0.964 46 H 0.029 0.971 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.355 19.671 -18.473 28.249 hybrid contribution -0.766 -1.113 0.267 1.377 sum 7.589 18.558 -18.206 27.082 Atomic orbital electron populations 1.21927 0.79139 1.03224 1.02562 1.47847 1.07081 1.05269 1.74630 1.20335 0.98759 0.85380 0.92370 1.19961 0.94877 0.98352 0.97420 1.20759 0.98604 0.97399 0.94977 1.20955 0.96698 1.00718 0.94886 1.18118 0.94843 0.97745 0.94304 1.21012 0.97865 1.00245 0.93722 1.20842 0.94448 0.98258 0.99963 1.20845 0.99563 0.98547 0.95183 1.21113 0.96478 0.99134 0.94906 1.18149 0.94910 0.97983 0.94370 1.21143 0.97536 0.97608 0.93105 1.20791 0.87944 0.85147 0.74362 1.90602 1.14046 1.87224 1.49152 1.21568 0.95167 0.89508 0.98160 0.88533 1.58743 1.10856 1.09093 1.57571 1.22194 1.00663 1.00855 0.93171 1.19566 0.94484 0.92300 0.98368 1.21055 1.30919 1.11718 0.92378 0.91083 1.25042 0.95532 0.97352 0.95524 1.69908 1.35882 1.28226 1.19898 0.86776 0.78158 0.81063 0.83248 1.20233 1.21333 1.18974 0.91704 0.91356 0.90474 0.89677 0.88993 0.86029 0.85657 0.85752 0.86137 0.86042 0.85457 0.84761 0.83901 0.83571 0.92130 0.91772 0.96418 0.97100 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.79 9.58 59.84 0.57 1.36 16 2 N -0.61 -7.92 2.86 -182.96 -0.52 -8.44 16 3 C 0.15 1.73 5.50 -5.20 -0.03 1.70 16 4 C -0.10 -1.20 5.43 -104.97 -0.57 -1.77 16 5 C -0.10 -0.97 9.58 -39.93 -0.38 -1.35 16 6 C -0.11 -1.11 9.77 -39.49 -0.39 -1.49 16 7 C -0.05 -0.55 5.74 -106.83 -0.61 -1.16 16 8 C -0.11 -1.02 9.77 -39.48 -0.39 -1.40 16 9 C -0.12 -1.01 9.95 -39.93 -0.40 -1.40 16 10 C -0.12 -1.13 9.95 -39.93 -0.40 -1.53 16 11 C -0.10 -1.06 9.77 -39.48 -0.39 -1.44 16 12 C -0.05 -0.65 5.74 -106.83 -0.61 -1.27 16 13 C -0.08 -0.95 9.37 -39.49 -0.37 -1.32 16 14 C 0.53 8.50 6.92 -10.98 -0.08 8.42 16 15 O -0.53 -9.82 15.29 5.56 0.09 -9.74 16 16 C 0.07 1.15 2.48 -68.87 -0.17 0.98 16 17 H 0.10 1.48 6.30 -51.93 -0.33 1.15 16 18 N -0.83 -13.58 8.94 -5.66 -0.05 -13.63 16 19 C -0.13 -2.41 4.71 -26.73 -0.13 -2.54 16 20 C -0.01 -0.22 3.81 -27.89 -0.11 -0.32 16 21 C -0.52 -14.36 9.66 -34.44 -0.33 -14.70 16 22 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 23 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 24 N -0.90 -27.22 13.96 55.43 0.77 -26.44 16 25 Si 0.88 20.99 27.47 -169.99 -4.67 16.32 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 29 H 0.06 0.68 7.65 -51.93 -0.40 0.28 16 30 H 0.07 0.55 8.02 -51.93 -0.42 0.14 16 31 H 0.08 0.84 5.95 -51.93 -0.31 0.53 16 32 H 0.08 0.73 8.01 -51.93 -0.42 0.32 16 33 H 0.09 1.13 7.35 -51.93 -0.38 0.75 16 34 H 0.12 0.90 8.00 -52.48 -0.42 0.48 16 35 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 36 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 37 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 38 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 39 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.13 1.82 7.52 -52.48 -0.39 1.42 16 41 H 0.35 5.76 8.58 -39.29 -0.34 5.42 16 42 H 0.35 5.52 7.55 -39.29 -0.30 5.22 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.06 1.16 6.95 -51.93 -0.36 0.80 16 45 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 46 H 0.01 0.24 6.30 -51.93 -0.33 -0.09 16 47 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 382.56 15.07 5.77 5.77 Total: -1.00 -32.93 382.56 -10.36 -43.29 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -6.88 Total: 10.30 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -4.87 Total: -17.42 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: 0.20 Total: -48.52 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.93 -10.36 -43.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424060885.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.821 kcal (2) G-P(sol) polarization free energy of solvation -32.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds