Wall clock time and date at job start Tue Mar 31 2020 14:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46494 * 120.00444 * 2 1 4 4 C 1.50694 * 109.47248 * 270.27463 * 3 2 1 5 5 C 1.39377 * 119.50817 * 89.99863 * 4 3 2 6 6 C 1.36096 * 120.99335 * 179.97438 * 5 4 3 7 7 C 1.40536 * 119.65018 * 0.02562 * 6 5 4 8 8 C 1.40541 * 121.28974 * 180.02562 * 7 6 5 9 9 C 1.36095 * 119.65723 * 179.97438 * 8 7 6 10 10 C 1.39369 * 120.98785 * 0.02562 * 9 8 7 11 11 C 1.36097 * 120.99183 * 0.02562 * 10 9 8 12 12 C 1.40543 * 119.65039 * 359.95978 * 11 10 9 13 13 C 1.36093 * 119.50869 * 269.72691 * 4 3 2 14 14 C 1.34784 * 119.99864 * 180.27290 * 2 1 3 15 15 O 1.21279 * 119.99925 * 179.72608 * 14 2 1 16 16 C 1.50700 * 119.99961 * 359.72839 * 14 2 1 17 17 H 1.09000 * 109.47153 * 39.99352 * 16 14 2 18 18 N 1.46893 * 109.47248 * 160.00051 * 16 14 2 19 19 C 1.53005 * 109.47080 * 280.00010 * 16 14 2 20 20 C 1.52996 * 109.47310 * 174.99812 * 19 16 14 21 21 C 1.50699 * 109.47433 * 180.02562 * 20 19 16 22 22 H 1.07999 * 119.99582 * 359.97438 * 21 20 19 23 23 C 1.37873 * 120.00248 * 180.02562 * 21 20 19 24 24 N 1.31512 * 120.00360 * 180.02562 * 23 21 20 25 25 Si 1.86806 * 120.00005 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.46752 * 90.00219 * 25 23 21 27 27 H 1.48500 * 109.47325 * 210.00105 * 25 23 21 28 28 H 1.48499 * 109.47124 * 330.00719 * 25 23 21 29 29 H 1.09000 * 109.47297 * 269.72722 * 1 2 3 30 30 H 1.09002 * 109.47192 * 29.72648 * 1 2 3 31 31 H 1.08996 * 109.47342 * 149.72358 * 1 2 3 32 32 H 1.09003 * 109.47006 * 30.27410 * 3 2 1 33 33 H 1.09004 * 109.47665 * 150.27102 * 3 2 1 34 34 H 1.08003 * 119.50626 * 359.97438 * 5 4 3 35 35 H 1.07999 * 120.17279 * 179.97438 * 6 5 4 36 36 H 1.08005 * 120.17237 * 359.96324 * 8 7 6 37 37 H 1.07994 * 119.50526 * 180.02562 * 9 8 7 38 38 H 1.08009 * 119.50666 * 179.97438 * 10 9 8 39 39 H 1.07996 * 120.17600 * 179.97438 * 11 10 9 40 40 H 1.08005 * 120.16762 * 359.97277 * 13 4 3 41 41 H 1.00899 * 110.99966 * 59.99880 * 18 16 14 42 42 H 1.00906 * 111.00310 * 183.95601 * 18 16 14 43 43 H 1.08999 * 109.46842 * 294.99900 * 19 16 14 44 44 H 1.08999 * 109.46967 * 54.99875 * 19 16 14 45 45 H 1.09005 * 109.47136 * 300.00285 * 20 19 16 46 46 H 1.09002 * 109.46992 * 59.99600 * 20 19 16 47 47 H 0.96999 * 120.00622 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4428 1.7070 -1.4207 5 6 1.5041 2.5133 -2.0621 6 6 1.6953 2.9272 -3.3445 7 6 2.8553 2.5371 -4.0353 8 6 3.0879 2.9450 -5.3600 9 6 4.2230 2.5481 -5.9974 10 6 5.1611 1.7410 -5.3563 11 6 4.9691 1.3258 -4.0745 12 6 3.8089 1.7158 -3.3838 13 6 3.5802 1.3144 -2.0565 14 6 2.1388 -1.1673 -0.0056 15 8 3.3516 -1.1673 -0.0106 16 6 1.3853 -2.4724 -0.0056 17 1 0.5191 -2.3918 -0.6623 18 7 2.2655 -3.5460 -0.4854 19 6 0.9192 -2.7922 1.4162 20 6 0.0491 -4.0505 1.3968 21 6 -0.4105 -4.3652 2.7971 22 1 -0.1115 -3.7313 3.6187 23 6 -1.2117 -5.4629 3.0294 24 7 -1.6132 -5.7372 4.2513 25 14 -1.7282 -6.5598 1.6082 26 1 -0.7259 -7.6405 1.4275 27 1 -3.0548 -7.1590 1.9021 28 1 -1.8144 -5.7518 0.3652 29 1 -0.3634 -0.0049 1.0276 30 1 -0.3634 0.8924 -0.5096 31 1 -0.3634 -0.8874 -0.5181 32 1 1.6106 2.0271 0.5181 33 1 3.1521 1.1371 0.5096 34 1 0.6116 2.8142 -1.5336 35 1 0.9590 3.5514 -3.8289 36 1 2.3694 3.5700 -5.8696 37 1 4.3994 2.8633 -7.0151 38 1 6.0535 1.4397 -5.8850 39 1 5.7045 0.7003 -3.5906 40 1 4.3011 0.6936 -1.5452 41 1 3.0765 -3.6407 0.1073 42 1 1.7652 -4.4194 -0.5560 43 1 1.7871 -2.9603 2.0539 44 1 0.3391 -1.9554 1.8052 45 1 -0.8187 -3.8824 0.7591 46 1 0.6292 -4.8873 1.0077 47 1 -2.1773 -6.5093 4.4147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424060885.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:28 Heat of formation + Delta-G solvation = -18.433533 kcal Electronic energy + Delta-G solvation = -26943.822366 eV Core-core repulsion = 23282.907308 eV Total energy + Delta-G solvation = -3660.915058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.55290 -40.87356 -38.05845 -37.09210 -36.26191 -34.82431 -33.71043 -32.09698 -31.99894 -30.39970 -28.81869 -27.99288 -26.99491 -25.02105 -24.12956 -22.99012 -22.79835 -21.96570 -20.18673 -19.03353 -18.50869 -18.25103 -17.69080 -17.36717 -17.13399 -16.28866 -16.08124 -15.88716 -15.61112 -15.56518 -15.19362 -14.94609 -14.65148 -14.55194 -14.41956 -14.25433 -14.14181 -13.79137 -13.67386 -13.55986 -13.29418 -13.00008 -12.90125 -12.58139 -12.54490 -12.18938 -12.05255 -11.93367 -11.89557 -11.70944 -11.65892 -11.40779 -10.93450 -10.77726 -10.69124 -9.78277 -9.61844 -9.47603 -8.80220 -8.29640 -6.34996 -0.38970 0.03840 1.11594 1.38478 1.39392 1.50918 1.60253 1.84862 2.29071 2.36035 3.05839 3.20070 3.51503 3.65911 3.71131 3.79177 3.95520 4.01063 4.06410 4.12730 4.14215 4.27303 4.33205 4.35680 4.45745 4.51289 4.56123 4.61482 4.67399 4.69082 4.80563 4.90386 4.92832 4.98823 5.04732 5.17973 5.31370 5.34606 5.36247 5.45668 5.49953 5.55137 5.62326 5.62968 5.70588 5.94289 6.02740 6.10717 6.25235 6.35531 6.47073 6.73192 7.16768 7.29726 8.87012 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.021550 B = 0.002470 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.991213 B =11332.597366 C =11641.988306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.607 5.607 3 C 0.153 3.847 4 C -0.106 4.106 5 C -0.105 4.105 6 C -0.110 4.110 7 C -0.070 4.070 8 C -0.112 4.112 9 C -0.122 4.122 10 C -0.120 4.120 11 C -0.127 4.127 12 C -0.075 4.075 13 C -0.102 4.102 14 C 0.521 3.479 15 O -0.567 6.567 16 C 0.080 3.920 17 H 0.115 0.885 18 N -0.832 5.832 19 C -0.116 4.116 20 C -0.004 4.004 21 C -0.532 4.532 22 H 0.027 0.973 23 C 0.003 3.997 24 N -0.952 5.952 25 Si 0.952 3.048 26 H -0.270 1.270 27 H -0.287 1.287 28 H -0.237 1.237 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.118 0.882 33 H 0.071 0.929 34 H 0.151 0.849 35 H 0.156 0.844 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.143 0.857 39 H 0.124 0.876 40 H 0.109 0.891 41 H 0.344 0.656 42 H 0.354 0.646 43 H 0.039 0.961 44 H 0.067 0.933 45 H 0.032 0.968 46 H 0.021 0.979 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.175 20.818 -21.391 30.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.340 5.340 3 C 0.031 3.969 4 C -0.107 4.107 5 C -0.123 4.123 6 C -0.127 4.127 7 C -0.071 4.071 8 C -0.130 4.130 9 C -0.140 4.140 10 C -0.138 4.138 11 C -0.145 4.145 12 C -0.075 4.075 13 C -0.121 4.121 14 C 0.310 3.690 15 O -0.446 6.446 16 C -0.035 4.035 17 H 0.132 0.868 18 N -0.363 5.363 19 C -0.156 4.156 20 C -0.042 4.042 21 C -0.570 4.570 22 H 0.045 0.955 23 C -0.194 4.194 24 N -0.592 5.592 25 Si 0.775 3.225 26 H -0.195 1.195 27 H -0.213 1.213 28 H -0.160 1.160 29 H 0.085 0.915 30 H 0.119 0.881 31 H 0.094 0.906 32 H 0.136 0.864 33 H 0.090 0.910 34 H 0.169 0.831 35 H 0.174 0.826 36 H 0.170 0.830 37 H 0.168 0.832 38 H 0.160 0.840 39 H 0.142 0.858 40 H 0.127 0.873 41 H 0.158 0.842 42 H 0.169 0.831 43 H 0.058 0.942 44 H 0.085 0.915 45 H 0.050 0.950 46 H 0.039 0.961 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.772 21.151 -21.940 31.218 hybrid contribution -0.224 -1.460 1.379 2.021 sum 6.548 19.691 -20.561 29.212 Atomic orbital electron populations 1.22154 0.77352 1.04849 1.03160 1.47902 1.08217 1.04877 1.72972 1.20468 0.98369 0.85281 0.92809 1.20020 0.94895 0.98591 0.97215 1.21018 0.99072 0.96949 0.95305 1.21346 0.96524 1.00078 0.94795 1.18464 0.95235 0.97940 0.95425 1.21384 0.98565 1.00019 0.93017 1.21231 0.93961 0.97569 1.01241 1.21181 1.00411 0.97727 0.94504 1.21253 0.96751 1.00488 0.96055 1.18366 0.95946 0.98859 0.94364 1.21064 0.98186 0.98861 0.93942 1.20798 0.87609 0.86037 0.74590 1.90595 1.15352 1.87745 1.50860 1.21482 0.95730 0.89810 0.96499 0.86754 1.58757 1.10819 1.09402 1.57368 1.21990 0.99264 0.99535 0.94787 1.19485 0.95473 0.94077 0.95146 1.21405 1.30647 1.11006 0.93943 0.95479 1.26059 0.95621 0.99179 0.98536 1.70075 1.37225 1.29279 1.22665 0.85628 0.77573 0.79007 0.80243 1.19497 1.21321 1.16000 0.91550 0.88114 0.90573 0.86436 0.91047 0.83114 0.82623 0.82952 0.83228 0.83964 0.85842 0.87302 0.84241 0.83114 0.94216 0.91454 0.94993 0.96114 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.23 9.58 127.77 1.22 2.46 16 2 N -0.61 -15.02 2.86 -851.16 -2.43 -17.45 16 3 C 0.15 3.32 5.50 85.63 0.47 3.79 16 4 C -0.11 -2.36 5.43 -20.09 -0.11 -2.46 16 5 C -0.11 -1.78 9.58 22.05 0.21 -1.57 16 6 C -0.11 -1.81 9.77 22.33 0.22 -1.59 16 7 C -0.07 -1.44 5.74 -21.30 -0.12 -1.56 16 8 C -0.11 -1.76 9.77 22.33 0.22 -1.54 16 9 C -0.12 -1.80 9.95 22.04 0.22 -1.58 16 10 C -0.12 -2.08 9.95 22.04 0.22 -1.86 16 11 C -0.13 -2.84 9.77 22.33 0.22 -2.62 16 12 C -0.08 -1.86 5.74 -21.30 -0.12 -1.98 16 13 C -0.10 -2.70 9.37 22.33 0.21 -2.49 16 14 C 0.52 16.74 6.92 87.66 0.61 17.34 16 15 O -0.57 -21.62 15.29 -3.03 -0.05 -21.67 16 16 C 0.08 2.51 2.48 44.17 0.11 2.62 16 17 H 0.11 3.22 6.30 -2.39 -0.02 3.20 16 18 N -0.83 -26.60 8.94 -171.81 -1.54 -28.14 16 19 C -0.12 -4.30 4.71 30.59 0.14 -4.16 16 20 C 0.00 -0.19 3.81 29.85 0.11 -0.07 16 21 C -0.53 -29.70 9.66 25.60 0.25 -29.46 16 22 H 0.03 1.69 7.99 -2.91 -0.02 1.67 16 23 C 0.00 0.16 5.47 84.65 0.46 0.62 16 24 N -0.95 -58.95 13.96 21.45 0.30 -58.65 16 25 Si 0.95 42.49 27.47 68.60 1.88 44.38 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 28 H -0.24 -9.43 6.54 99.48 0.65 -8.78 16 29 H 0.07 1.24 7.65 -2.39 -0.02 1.22 16 30 H 0.10 1.23 8.02 -2.39 -0.02 1.21 16 31 H 0.08 1.45 5.95 -2.39 -0.01 1.43 16 32 H 0.12 1.76 8.01 -2.39 -0.02 1.74 16 33 H 0.07 1.85 7.35 -2.38 -0.02 1.83 16 34 H 0.15 1.58 8.00 -2.91 -0.02 1.56 16 35 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 36 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 37 H 0.15 1.28 8.06 -2.91 -0.02 1.25 16 38 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 39 H 0.12 2.64 8.06 -2.91 -0.02 2.61 16 40 H 0.11 3.32 7.52 -2.91 -0.02 3.30 16 41 H 0.34 11.50 8.58 -89.69 -0.77 10.73 16 42 H 0.35 10.59 7.55 -89.69 -0.68 9.92 16 43 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.07 2.43 6.95 -2.39 -0.02 2.41 16 45 H 0.03 1.31 7.20 -2.38 -0.02 1.29 16 46 H 0.02 0.86 6.30 -2.39 -0.02 0.85 16 47 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -74.59 382.56 2.20 -72.39 By element: Atomic # 1 Polarization: 35.76 SS G_CDS: -0.51 Total: 35.25 kcal Atomic # 6 Polarization: -30.65 SS G_CDS: 4.54 Total: -26.11 kcal Atomic # 7 Polarization: -100.57 SS G_CDS: -3.67 Total: -104.24 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.05 Total: -21.67 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.88 Total: 44.38 kcal Total: -74.59 2.20 -72.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424060885.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.959 kcal (2) G-P(sol) polarization free energy of solvation -74.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds