Wall clock time and date at job start Tue Mar 31 2020 14:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46491 * 120.00211 * 2 1 4 4 C 1.50700 * 109.47370 * 90.00080 * 3 2 1 5 5 C 1.39374 * 119.50598 * 269.97878 * 4 3 2 6 6 C 1.36087 * 120.98902 * 179.97438 * 5 4 3 7 7 C 1.40545 * 119.65544 * 0.03915 * 6 5 4 8 8 C 1.40533 * 121.28541 * 179.97438 * 7 6 5 9 9 C 1.36093 * 119.65526 * 179.97438 * 8 7 6 10 10 C 1.39378 * 120.98927 * 359.94849 * 9 8 7 11 11 C 1.36095 * 120.98758 * 0.06983 * 10 9 8 12 12 C 1.40545 * 119.65358 * 359.95511 * 11 10 9 13 13 C 1.36093 * 119.50416 * 89.99782 * 4 3 2 14 14 C 1.34774 * 119.99752 * 179.97438 * 2 1 3 15 15 O 1.21280 * 120.00273 * 179.97438 * 14 2 1 16 16 C 1.50710 * 120.00032 * 0.02562 * 14 2 1 17 17 H 1.08999 * 109.46599 * 320.00142 * 16 14 2 18 18 N 1.46902 * 109.46982 * 199.99761 * 16 14 2 19 19 C 1.52998 * 109.47020 * 79.99722 * 16 14 2 20 20 C 1.53002 * 109.47114 * 185.00071 * 19 16 14 21 21 C 1.50702 * 109.47219 * 180.02562 * 20 19 16 22 22 H 1.08003 * 119.99906 * 359.97438 * 21 20 19 23 23 C 1.37875 * 119.99880 * 180.02562 * 21 20 19 24 24 N 1.31522 * 119.99625 * 180.02562 * 23 21 20 25 25 Si 1.86793 * 120.00045 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47290 * 90.00550 * 25 23 21 27 27 H 1.48504 * 109.47014 * 210.00384 * 25 23 21 28 28 H 1.48505 * 109.47317 * 330.00033 * 25 23 21 29 29 H 1.08993 * 109.47332 * 89.99891 * 1 2 3 30 30 H 1.08998 * 109.47092 * 210.00729 * 1 2 3 31 31 H 1.09004 * 109.46383 * 329.99973 * 1 2 3 32 32 H 1.09001 * 109.47152 * 330.00160 * 3 2 1 33 33 H 1.08999 * 109.47226 * 209.99950 * 3 2 1 34 34 H 1.07996 * 119.50518 * 0.02562 * 5 4 3 35 35 H 1.08001 * 120.17917 * 179.97438 * 6 5 4 36 36 H 1.07996 * 120.17302 * 359.95478 * 8 7 6 37 37 H 1.08000 * 119.50630 * 179.97438 * 9 8 7 38 38 H 1.07996 * 119.50867 * 180.02562 * 10 9 8 39 39 H 1.07998 * 120.16921 * 180.22554 * 11 10 9 40 40 H 1.08005 * 120.17341 * 359.96274 * 13 4 3 41 41 H 1.00902 * 110.99796 * 299.99485 * 18 16 14 42 42 H 1.00898 * 110.99936 * 63.95272 * 18 16 14 43 43 H 1.09003 * 109.47214 * 305.00148 * 19 16 14 44 44 H 1.09001 * 109.47231 * 65.00104 * 19 16 14 45 45 H 1.08998 * 109.46707 * 299.99965 * 20 19 16 46 46 H 1.09001 * 109.47045 * 59.99918 * 20 19 16 47 47 H 0.96995 * 119.99338 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4488 1.7037 1.4208 5 6 1.5130 2.5088 2.0678 6 6 1.7090 2.9187 3.3506 7 6 2.8719 2.5269 4.0358 8 6 3.1093 2.9308 5.3607 9 6 4.2464 2.5315 5.9929 10 6 5.1817 1.7253 5.3464 11 6 4.9855 1.3152 4.0636 12 6 3.8232 1.7078 3.3781 13 6 3.5862 1.3049 2.0527 14 6 2.1389 -1.1672 0.0005 15 8 3.3517 -1.1673 0.0001 16 6 1.3853 -2.4724 0.0005 17 1 0.5216 -2.3931 0.6607 18 7 2.2674 -3.5471 0.4748 19 6 0.9138 -2.7890 -1.4201 20 6 0.0438 -4.0475 -1.4002 21 6 -0.4200 -4.3598 -2.7996 22 1 -0.1242 -3.7240 -3.6211 23 6 -1.2228 -5.4565 -3.0311 24 7 -1.6272 -5.7293 -4.2525 25 14 -1.7349 -6.5557 -1.6103 26 1 -3.0086 -6.0566 -1.0325 27 1 -1.9249 -7.9440 -2.1021 28 1 -0.6784 -6.5404 -0.5668 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3632 0.8901 0.5139 32 1 1.6085 2.0283 -0.5138 33 1 3.1500 1.1383 -0.5138 34 1 0.6185 2.8111 1.5436 35 1 0.9754 3.5428 3.8393 36 1 2.3933 3.5551 5.8745 37 1 4.4266 2.8437 7.0110 38 1 6.0757 1.4222 5.8709 39 1 5.7172 0.6876 3.5766 40 1 4.3024 0.6808 1.5388 41 1 3.0761 -3.6405 -0.1213 42 1 2.5407 -3.3938 1.4338 43 1 0.3323 -1.9513 -1.8052 44 1 1.7793 -2.9558 -2.0615 45 1 0.6254 -4.8851 -1.0152 46 1 -0.8216 -3.8807 -0.7589 47 1 -2.1917 -6.5011 -4.4154 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424060890.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:31 Heat of formation + Delta-G solvation = -19.095532 kcal Electronic energy + Delta-G solvation = -26951.695928 eV Core-core repulsion = 23290.752163 eV Total energy + Delta-G solvation = -3660.943764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.60956 -40.94079 -38.07486 -36.85935 -36.31944 -34.79594 -33.73619 -32.28978 -32.01448 -30.42368 -28.77562 -28.02160 -27.02333 -24.85620 -24.14149 -22.99156 -22.81677 -21.89499 -20.25072 -18.87713 -18.46097 -18.25987 -17.66450 -17.45404 -17.18102 -16.82103 -16.20449 -15.96670 -15.63530 -15.49910 -15.06166 -14.80732 -14.67371 -14.52776 -14.38450 -14.23038 -14.16156 -13.82391 -13.63492 -13.52044 -13.26528 -12.93312 -12.76711 -12.61866 -12.45169 -12.21852 -11.97101 -11.95448 -11.74489 -11.70831 -11.58380 -11.27051 -11.10356 -10.91910 -10.69917 -9.79623 -9.69593 -9.47205 -8.83092 -8.24108 -6.27118 -0.42046 0.00910 1.08585 1.40034 1.43956 1.50278 1.57926 1.83602 2.28819 2.42315 3.12413 3.17317 3.45178 3.61335 3.67639 3.75973 3.92761 3.98486 4.03917 4.09870 4.19914 4.24868 4.33129 4.33847 4.42985 4.48629 4.58404 4.62856 4.70230 4.75359 4.82934 4.87592 4.97687 5.01569 5.14244 5.15774 5.28403 5.31819 5.44523 5.50322 5.52511 5.60502 5.65632 5.67230 5.74435 5.91063 6.03059 6.07729 6.29870 6.33603 6.46018 6.81163 7.06498 7.37331 8.92688 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.021531 B = 0.002472 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.153253 B =11321.877763 C =11632.582290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.603 5.603 3 C 0.150 3.850 4 C -0.105 4.105 5 C -0.106 4.106 6 C -0.109 4.109 7 C -0.070 4.070 8 C -0.112 4.112 9 C -0.122 4.122 10 C -0.120 4.120 11 C -0.127 4.127 12 C -0.075 4.075 13 C -0.103 4.103 14 C 0.484 3.516 15 O -0.578 6.578 16 C 0.083 3.917 17 H 0.116 0.884 18 N -0.818 5.818 19 C -0.076 4.076 20 C 0.004 3.996 21 C -0.529 4.529 22 H 0.028 0.972 23 C 0.003 3.997 24 N -0.954 5.954 25 Si 0.951 3.049 26 H -0.263 1.263 27 H -0.290 1.290 28 H -0.247 1.247 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.070 0.930 34 H 0.150 0.850 35 H 0.156 0.844 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.143 0.857 39 H 0.125 0.875 40 H 0.110 0.890 41 H 0.345 0.655 42 H 0.346 0.654 43 H 0.068 0.932 44 H 0.037 0.963 45 H 0.027 0.973 46 H 0.022 0.978 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.419 22.138 22.671 32.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.335 5.335 3 C 0.027 3.973 4 C -0.106 4.106 5 C -0.124 4.124 6 C -0.126 4.126 7 C -0.071 4.071 8 C -0.130 4.130 9 C -0.140 4.140 10 C -0.137 4.137 11 C -0.145 4.145 12 C -0.075 4.075 13 C -0.121 4.121 14 C 0.271 3.729 15 O -0.458 6.458 16 C -0.032 4.032 17 H 0.134 0.866 18 N -0.347 5.347 19 C -0.115 4.115 20 C -0.034 4.034 21 C -0.567 4.567 22 H 0.047 0.953 23 C -0.194 4.194 24 N -0.596 5.596 25 Si 0.774 3.226 26 H -0.188 1.188 27 H -0.216 1.216 28 H -0.170 1.170 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.133 0.867 33 H 0.088 0.912 34 H 0.168 0.832 35 H 0.173 0.827 36 H 0.170 0.830 37 H 0.167 0.833 38 H 0.161 0.839 39 H 0.143 0.857 40 H 0.128 0.872 41 H 0.159 0.841 42 H 0.159 0.841 43 H 0.086 0.914 44 H 0.056 0.944 45 H 0.045 0.955 46 H 0.041 0.959 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.315 21.529 22.415 31.929 hybrid contribution 0.706 -0.127 -0.256 0.762 sum 8.022 21.401 22.159 31.834 Atomic orbital electron populations 1.22175 0.77258 1.04898 1.03289 1.48048 1.08293 1.05034 1.72128 1.20480 0.98328 0.85597 0.92852 1.20002 0.94967 0.98570 0.97054 1.21010 0.99117 0.97046 0.95253 1.21348 0.96505 0.99977 0.94818 1.18463 0.95210 0.98003 0.95382 1.21381 0.98545 0.99994 0.93059 1.21238 0.93957 0.97533 1.01259 1.21188 1.00380 0.97692 0.94491 1.21247 0.96708 1.00564 0.96006 1.18357 0.95894 0.98859 0.94354 1.21049 0.98083 0.99066 0.93947 1.22400 0.88377 0.87502 0.74649 1.90611 1.15341 1.87945 1.51873 1.21712 0.96556 0.85592 0.99389 0.86613 1.59048 1.24106 1.43918 1.07651 1.21232 0.98777 0.99108 0.92356 1.19356 0.94964 0.94866 0.94167 1.21534 1.30039 1.10787 0.94317 0.95324 1.26001 0.95814 0.99162 0.98387 1.70084 1.37488 1.29427 1.22556 0.85642 0.79783 0.77341 0.79798 1.18751 1.21600 1.17000 0.91521 0.90340 0.88158 0.86667 0.91162 0.83233 0.82682 0.83014 0.83265 0.83948 0.85733 0.87222 0.84128 0.84127 0.91374 0.94406 0.95510 0.95931 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.17 9.57 127.77 1.22 2.39 16 2 N -0.60 -14.20 2.86 -851.14 -2.43 -16.63 16 3 C 0.15 3.13 5.50 85.63 0.47 3.60 16 4 C -0.10 -2.20 5.43 -20.09 -0.11 -2.31 16 5 C -0.11 -1.70 9.58 22.04 0.21 -1.49 16 6 C -0.11 -1.69 9.77 22.33 0.22 -1.47 16 7 C -0.07 -1.36 5.74 -21.30 -0.12 -1.48 16 8 C -0.11 -1.65 9.77 22.33 0.22 -1.43 16 9 C -0.12 -1.67 9.95 22.05 0.22 -1.45 16 10 C -0.12 -1.91 9.95 22.05 0.22 -1.69 16 11 C -0.13 -2.62 9.77 22.33 0.22 -2.41 16 12 C -0.07 -1.72 5.74 -21.30 -0.12 -1.84 16 13 C -0.10 -2.54 9.37 22.33 0.21 -2.33 16 14 C 0.48 14.58 6.91 87.66 0.61 15.19 16 15 O -0.58 -20.50 15.27 -3.03 -0.05 -20.55 16 16 C 0.08 2.57 2.42 44.17 0.11 2.68 16 17 H 0.12 3.18 6.31 -2.39 -0.02 3.16 16 18 N -0.82 -25.67 8.44 -171.79 -1.45 -27.12 16 19 C -0.08 -2.93 4.71 30.59 0.14 -2.79 16 20 C 0.00 0.18 3.93 29.85 0.12 0.30 16 21 C -0.53 -30.53 9.66 25.60 0.25 -30.28 16 22 H 0.03 1.82 7.99 -2.91 -0.02 1.80 16 23 C 0.00 0.15 5.47 84.65 0.46 0.61 16 24 N -0.95 -60.43 13.96 21.45 0.30 -60.13 16 25 Si 0.95 44.76 27.47 68.60 1.88 46.64 16 26 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 27 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 28 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 29 H 0.07 1.23 7.65 -2.39 -0.02 1.21 16 30 H 0.08 1.43 5.94 -2.39 -0.01 1.41 16 31 H 0.10 1.16 8.04 -2.38 -0.02 1.14 16 32 H 0.12 1.69 8.01 -2.39 -0.02 1.67 16 33 H 0.07 1.77 7.35 -2.39 -0.02 1.75 16 34 H 0.15 1.49 8.02 -2.91 -0.02 1.47 16 35 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 36 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 37 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 38 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 39 H 0.12 2.42 8.06 -2.91 -0.02 2.40 16 40 H 0.11 3.12 7.49 -2.91 -0.02 3.10 16 41 H 0.35 11.35 8.58 -89.69 -0.77 10.58 16 42 H 0.35 9.43 9.06 -89.70 -0.81 8.62 16 43 H 0.07 2.48 6.94 -2.39 -0.02 2.46 16 44 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.03 1.28 6.81 -2.39 -0.02 1.26 16 46 H 0.02 0.98 7.57 -2.39 -0.02 0.96 16 47 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -75.46 384.48 2.15 -73.32 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: -0.65 Total: 30.68 kcal Atomic # 6 Polarization: -30.74 SS G_CDS: 4.54 Total: -26.21 kcal Atomic # 7 Polarization: -100.31 SS G_CDS: -3.58 Total: -103.89 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.05 Total: -20.55 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.88 Total: 46.64 kcal Total: -75.46 2.15 -73.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424060890.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.222 kcal (2) G-P(sol) polarization free energy of solvation -75.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds