Wall clock time and date at job start Tue Mar 31 2020 14:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 120.00209 * 2 1 4 4 C 1.50704 * 109.46947 * 94.86271 * 3 2 1 5 5 C 1.36126 * 120.17628 * 354.88559 * 4 3 2 6 6 C 1.39338 * 120.98671 * 179.97438 * 5 4 3 7 7 C 1.36122 * 120.99196 * 0.02562 * 6 5 4 8 8 C 1.40500 * 119.65557 * 359.97438 * 7 6 5 9 9 C 1.40545 * 121.29915 * 180.02562 * 8 7 6 10 10 C 1.36095 * 119.65453 * 179.97438 * 9 8 7 11 11 C 1.39379 * 120.99620 * 359.97438 * 10 9 8 12 12 C 1.36095 * 120.99025 * 0.02562 * 11 10 9 13 13 C 1.40501 * 120.17137 * 174.86345 * 4 3 2 14 14 C 1.34775 * 119.99755 * 179.97438 * 2 1 3 15 15 O 1.21287 * 119.99806 * 185.18544 * 14 2 1 16 16 C 1.50698 * 119.99994 * 5.18365 * 14 2 1 17 17 H 1.09001 * 109.47413 * 319.99977 * 16 14 2 18 18 N 1.46903 * 109.47076 * 199.99702 * 16 14 2 19 19 C 1.53004 * 109.47106 * 80.00245 * 16 14 2 20 20 C 1.53002 * 109.47205 * 184.99995 * 19 16 14 21 21 C 1.50692 * 109.46926 * 179.97438 * 20 19 16 22 22 H 1.08000 * 120.00534 * 359.97438 * 21 20 19 23 23 C 1.37885 * 119.99962 * 179.97438 * 21 20 19 24 24 N 1.31511 * 119.99646 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99958 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47345 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47117 * 120.00230 * 25 23 21 28 28 H 1.48500 * 109.46864 * 239.99717 * 25 23 21 29 29 H 1.09004 * 109.46896 * 89.99555 * 1 2 3 30 30 H 1.08995 * 109.47289 * 210.00056 * 1 2 3 31 31 H 1.09005 * 109.47072 * 329.99835 * 1 2 3 32 32 H 1.09000 * 109.47119 * 334.86632 * 3 2 1 33 33 H 1.09000 * 109.47259 * 214.86258 * 3 2 1 34 34 H 1.08004 * 119.50214 * 0.02562 * 5 4 3 35 35 H 1.07999 * 119.50145 * 180.02562 * 6 5 4 36 36 H 1.08003 * 120.16721 * 180.27631 * 7 6 5 37 37 H 1.07994 * 120.17525 * 359.97438 * 9 8 7 38 38 H 1.07994 * 119.50309 * 179.97438 * 10 9 8 39 39 H 1.07997 * 119.50786 * 180.02562 * 11 10 9 40 40 H 1.07998 * 120.17239 * 180.02562 * 12 11 10 41 41 H 1.00896 * 111.00550 * 300.00233 * 18 16 14 42 42 H 1.00909 * 110.99864 * 63.95986 * 18 16 14 43 43 H 1.09001 * 109.46983 * 305.00125 * 19 16 14 44 44 H 1.09000 * 109.46771 * 64.99583 * 19 16 14 45 45 H 1.08998 * 109.46810 * 299.99727 * 20 19 16 46 46 H 1.08994 * 109.47060 * 59.99681 * 20 19 16 47 47 H 0.97007 * 119.99796 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5530 1.6435 1.4158 5 6 2.1000 0.8923 2.4567 6 6 2.4188 1.2231 3.7722 7 6 3.1920 2.3072 4.0547 8 6 3.6781 3.1065 3.0064 9 6 4.4796 4.2331 3.2586 10 6 4.9328 4.9837 2.2177 11 6 4.6148 4.6522 0.9018 12 6 3.8413 3.5686 0.6194 13 6 3.3542 2.7698 1.6681 14 6 2.1388 -1.1672 0.0005 15 8 3.3480 -1.1693 0.0955 16 6 1.3899 -2.4697 -0.1168 17 1 0.4773 -2.4188 0.4770 18 7 2.2343 -3.5662 0.3759 19 6 1.0312 -2.7214 -1.5827 20 6 0.1645 -3.9780 -1.6872 21 6 -0.1893 -4.2255 -3.1309 22 1 0.1678 -3.5537 -3.8974 23 6 -0.9690 -5.3099 -3.4735 24 7 -1.4035 -6.1284 -2.5403 25 14 -1.4082 -5.6164 -5.2631 26 1 -0.8009 -4.5585 -6.1100 27 1 -0.8889 -6.9437 -5.6799 28 1 -2.8844 -5.5903 -5.4219 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.5735 2.0486 -0.4365 33 1 3.1095 1.1617 -0.5874 34 1 1.4850 0.0266 2.2599 35 1 2.0468 0.6101 4.5798 36 1 3.4346 2.5487 5.0790 37 1 4.7345 4.5019 4.2730 38 1 5.5481 5.8491 2.4142 39 1 4.9878 5.2644 0.0940 40 1 3.6034 3.3237 -0.4052 41 1 3.0872 -3.6341 -0.1588 42 1 2.4318 -3.4566 1.3594 43 1 0.4799 -1.8663 -1.9739 44 1 1.9443 -2.8606 -2.1614 45 1 0.7158 -4.8331 -1.2960 46 1 -0.7485 -3.8387 -1.1084 47 1 -1.9523 -6.8911 -2.7812 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424090189.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:35 Heat of formation + Delta-G solvation = 4.663976 kcal Electronic energy + Delta-G solvation = -27087.685216 eV Core-core repulsion = 23427.771741 eV Total energy + Delta-G solvation = -3659.913475 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.89294 -39.83822 -36.94204 -35.67142 -35.25502 -33.25419 -32.77679 -30.51324 -30.13503 -29.86553 -27.62088 -26.80493 -25.55607 -23.63131 -23.32835 -22.97952 -21.18178 -20.24588 -18.94438 -17.71551 -17.30942 -17.16865 -16.61384 -16.23211 -15.85208 -15.51602 -15.13876 -14.59526 -14.38867 -14.25428 -14.14752 -13.91826 -13.54799 -13.41400 -13.31497 -13.02974 -12.79256 -12.72262 -12.32133 -12.26371 -12.08629 -11.94411 -11.48257 -11.42794 -11.15673 -11.03784 -10.91442 -10.66534 -10.51141 -10.08815 -9.97733 -9.78588 -9.37492 -8.99670 -8.80529 -8.76786 -8.35921 -8.21175 -8.02644 -5.94765 -3.96717 0.32303 0.82486 1.84407 2.72771 2.80900 2.97916 3.33110 3.40896 3.44593 3.90167 4.33510 4.49023 4.58362 4.63824 4.69160 4.75828 4.79319 4.94757 4.95746 5.07032 5.11063 5.18678 5.20678 5.29948 5.34405 5.38009 5.41241 5.56370 5.62355 5.73390 5.75980 5.86732 5.88897 6.01448 6.05123 6.22278 6.26522 6.36319 6.43678 6.56358 6.61830 6.66821 6.81418 7.06737 7.28940 7.49729 7.75291 7.78860 7.95363 8.12351 8.25209 8.47783 9.11470 9.66506 11.16140 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.025333 B = 0.002397 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.028730 B =11677.649112 C =12168.981368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.616 5.616 3 C 0.153 3.847 4 C -0.080 4.080 5 C -0.104 4.104 6 C -0.108 4.108 7 C -0.115 4.115 8 C -0.050 4.050 9 C -0.107 4.107 10 C -0.119 4.119 11 C -0.119 4.119 12 C -0.105 4.105 13 C -0.044 4.044 14 C 0.483 3.517 15 O -0.545 6.545 16 C 0.077 3.923 17 H 0.099 0.901 18 N -0.807 5.807 19 C -0.094 4.094 20 C 0.032 3.968 21 C -0.521 4.521 22 H 0.052 0.948 23 C 0.057 3.943 24 N -0.892 5.892 25 Si 0.888 3.112 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.285 1.285 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.348 0.652 42 H 0.333 0.667 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.035 0.965 46 H 0.012 0.988 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.948 22.571 12.803 27.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.350 5.350 3 C 0.030 3.970 4 C -0.081 4.081 5 C -0.122 4.122 6 C -0.126 4.126 7 C -0.133 4.133 8 C -0.050 4.050 9 C -0.125 4.125 10 C -0.137 4.137 11 C -0.137 4.137 12 C -0.123 4.123 13 C -0.044 4.044 14 C 0.270 3.730 15 O -0.421 6.421 16 C -0.038 4.038 17 H 0.116 0.884 18 N -0.335 5.335 19 C -0.132 4.132 20 C -0.005 4.005 21 C -0.559 4.559 22 H 0.070 0.930 23 C -0.144 4.144 24 N -0.532 5.532 25 Si 0.716 3.284 26 H -0.199 1.199 27 H -0.211 1.211 28 H -0.211 1.211 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.145 0.855 41 H 0.162 0.838 42 H 0.145 0.855 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.053 0.947 46 H 0.031 0.969 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.874 21.891 12.650 26.481 hybrid contribution 0.352 0.614 -0.698 0.994 sum 8.226 22.504 11.952 26.776 Atomic orbital electron populations 1.21979 0.78727 1.03294 1.03001 1.47970 1.07307 1.05485 1.74241 1.20292 0.97894 0.85842 0.92945 1.20108 0.97069 0.94511 0.96394 1.20705 0.99990 0.99489 0.92024 1.20870 0.98079 0.97040 0.96660 1.20984 0.98566 0.95549 0.98230 1.18059 0.98289 0.95984 0.92689 1.21011 0.97569 0.94544 0.99343 1.20840 1.00203 0.99910 0.92780 1.20843 0.98588 0.97481 0.96751 1.21060 0.97792 0.94967 0.98501 1.17840 0.98214 0.95428 0.92956 1.22808 0.88815 0.86897 0.74452 1.90662 1.14574 1.87433 1.49455 1.21917 0.96163 0.84366 1.01366 0.88364 1.59021 1.23881 1.43188 1.07421 1.21641 1.00773 1.01651 0.89163 1.19009 0.93722 0.91522 0.96261 1.21306 1.31282 1.10096 0.93239 0.92970 1.24995 0.96199 0.96154 0.97023 1.69984 1.35866 1.15137 1.32175 0.86601 0.78034 0.78104 0.85623 1.19874 1.21057 1.21109 0.91496 0.90166 0.91209 0.89011 0.88937 0.86059 0.85979 0.85720 0.85711 0.86095 0.85990 0.85549 0.83840 0.85533 0.92738 0.92949 0.94704 0.96917 0.93158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 9.29 59.85 0.56 1.30 16 2 N -0.62 -7.77 1.72 -182.95 -0.32 -8.09 16 3 C 0.15 1.77 4.45 -5.19 -0.02 1.74 16 4 C -0.08 -0.96 5.86 -104.53 -0.61 -1.57 16 5 C -0.10 -1.25 9.07 -39.93 -0.36 -1.61 16 6 C -0.11 -1.15 9.95 -39.93 -0.40 -1.55 16 7 C -0.12 -1.16 9.77 -39.49 -0.39 -1.55 16 8 C -0.05 -0.55 5.74 -106.83 -0.61 -1.17 16 9 C -0.11 -0.96 9.77 -39.48 -0.39 -1.35 16 10 C -0.12 -0.99 9.95 -39.93 -0.40 -1.39 16 11 C -0.12 -1.03 9.95 -39.93 -0.40 -1.43 16 12 C -0.11 -1.06 9.37 -39.48 -0.37 -1.43 16 13 C -0.04 -0.51 5.74 -106.83 -0.61 -1.13 16 14 C 0.48 7.57 6.10 -10.99 -0.07 7.51 16 15 O -0.54 -10.09 15.97 5.55 0.09 -10.00 16 16 C 0.08 1.29 2.46 -68.86 -0.17 1.12 16 17 H 0.10 1.52 6.21 -51.93 -0.32 1.20 16 18 N -0.81 -13.66 8.44 -5.65 -0.05 -13.71 16 19 C -0.09 -1.88 4.73 -26.73 -0.13 -2.00 16 20 C 0.03 0.81 4.86 -27.89 -0.14 0.67 16 21 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 16 22 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 23 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 24 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 25 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 26 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 28 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 29 H 0.07 0.70 7.71 -51.93 -0.40 0.30 16 30 H 0.08 0.83 6.02 -51.93 -0.31 0.52 16 31 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 32 H 0.09 0.83 8.04 -51.93 -0.42 0.41 16 33 H 0.09 1.18 7.35 -51.93 -0.38 0.80 16 34 H 0.12 1.47 6.14 -52.48 -0.32 1.14 16 35 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 37 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.13 1.07 6.97 -52.49 -0.37 0.70 16 41 H 0.35 6.02 8.58 -39.29 -0.34 5.68 16 42 H 0.33 4.92 9.06 -39.29 -0.36 4.57 16 43 H 0.05 1.02 7.23 -51.93 -0.38 0.65 16 44 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.03 0.96 7.75 -51.93 -0.40 0.56 16 46 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 383.65 15.07 5.78 5.78 Total: -1.00 -33.61 383.65 -10.60 -44.21 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -6.91 Total: 8.37 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -4.91 Total: -17.18 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 0.37 Total: -47.79 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.61 -10.60 -44.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424090189.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.877 kcal (2) G-P(sol) polarization free energy of solvation -33.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds