Wall clock time and date at job start Tue Mar 31 2020 14:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 120.00209 * 2 1 4 4 C 1.50704 * 109.46947 * 94.86271 * 3 2 1 5 5 C 1.36126 * 120.17628 * 354.88559 * 4 3 2 6 6 C 1.39338 * 120.98671 * 179.97438 * 5 4 3 7 7 C 1.36122 * 120.99196 * 0.02562 * 6 5 4 8 8 C 1.40500 * 119.65557 * 359.97438 * 7 6 5 9 9 C 1.40545 * 121.29915 * 180.02562 * 8 7 6 10 10 C 1.36095 * 119.65453 * 179.97438 * 9 8 7 11 11 C 1.39379 * 120.99620 * 359.97438 * 10 9 8 12 12 C 1.36095 * 120.99025 * 0.02562 * 11 10 9 13 13 C 1.40501 * 120.17137 * 174.86345 * 4 3 2 14 14 C 1.34775 * 119.99755 * 179.97438 * 2 1 3 15 15 O 1.21287 * 119.99806 * 185.18544 * 14 2 1 16 16 C 1.50698 * 119.99994 * 5.18365 * 14 2 1 17 17 H 1.09001 * 109.47413 * 319.99977 * 16 14 2 18 18 N 1.46903 * 109.47076 * 199.99702 * 16 14 2 19 19 C 1.53004 * 109.47106 * 80.00245 * 16 14 2 20 20 C 1.53002 * 109.47205 * 184.99995 * 19 16 14 21 21 C 1.50692 * 109.46926 * 179.97438 * 20 19 16 22 22 H 1.08000 * 120.00534 * 359.97438 * 21 20 19 23 23 C 1.37885 * 119.99962 * 179.97438 * 21 20 19 24 24 N 1.31511 * 119.99646 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99958 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47345 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47117 * 120.00230 * 25 23 21 28 28 H 1.48500 * 109.46864 * 239.99717 * 25 23 21 29 29 H 1.09004 * 109.46896 * 89.99555 * 1 2 3 30 30 H 1.08995 * 109.47289 * 210.00056 * 1 2 3 31 31 H 1.09005 * 109.47072 * 329.99835 * 1 2 3 32 32 H 1.09000 * 109.47119 * 334.86632 * 3 2 1 33 33 H 1.09000 * 109.47259 * 214.86258 * 3 2 1 34 34 H 1.08004 * 119.50214 * 0.02562 * 5 4 3 35 35 H 1.07999 * 119.50145 * 180.02562 * 6 5 4 36 36 H 1.08003 * 120.16721 * 180.27631 * 7 6 5 37 37 H 1.07994 * 120.17525 * 359.97438 * 9 8 7 38 38 H 1.07994 * 119.50309 * 179.97438 * 10 9 8 39 39 H 1.07997 * 119.50786 * 180.02562 * 11 10 9 40 40 H 1.07998 * 120.17239 * 180.02562 * 12 11 10 41 41 H 1.00896 * 111.00550 * 300.00233 * 18 16 14 42 42 H 1.00909 * 110.99864 * 63.95986 * 18 16 14 43 43 H 1.09001 * 109.46983 * 305.00125 * 19 16 14 44 44 H 1.09000 * 109.46771 * 64.99583 * 19 16 14 45 45 H 1.08998 * 109.46810 * 299.99727 * 20 19 16 46 46 H 1.08994 * 109.47060 * 59.99681 * 20 19 16 47 47 H 0.97007 * 119.99796 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5530 1.6435 1.4158 5 6 2.1000 0.8923 2.4567 6 6 2.4188 1.2231 3.7722 7 6 3.1920 2.3072 4.0547 8 6 3.6781 3.1065 3.0064 9 6 4.4796 4.2331 3.2586 10 6 4.9328 4.9837 2.2177 11 6 4.6148 4.6522 0.9018 12 6 3.8413 3.5686 0.6194 13 6 3.3542 2.7698 1.6681 14 6 2.1388 -1.1672 0.0005 15 8 3.3480 -1.1693 0.0955 16 6 1.3899 -2.4697 -0.1168 17 1 0.4773 -2.4188 0.4770 18 7 2.2343 -3.5662 0.3759 19 6 1.0312 -2.7214 -1.5827 20 6 0.1645 -3.9780 -1.6872 21 6 -0.1893 -4.2255 -3.1309 22 1 0.1678 -3.5537 -3.8974 23 6 -0.9690 -5.3099 -3.4735 24 7 -1.4035 -6.1284 -2.5403 25 14 -1.4082 -5.6164 -5.2631 26 1 -0.8009 -4.5585 -6.1100 27 1 -0.8889 -6.9437 -5.6799 28 1 -2.8844 -5.5903 -5.4219 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.5735 2.0486 -0.4365 33 1 3.1095 1.1617 -0.5874 34 1 1.4850 0.0266 2.2599 35 1 2.0468 0.6101 4.5798 36 1 3.4346 2.5487 5.0790 37 1 4.7345 4.5019 4.2730 38 1 5.5481 5.8491 2.4142 39 1 4.9878 5.2644 0.0940 40 1 3.6034 3.3237 -0.4052 41 1 3.0872 -3.6341 -0.1588 42 1 2.4318 -3.4566 1.3594 43 1 0.4799 -1.8663 -1.9739 44 1 1.9443 -2.8606 -2.1614 45 1 0.7158 -4.8331 -1.2960 46 1 -0.7485 -3.8387 -1.1084 47 1 -1.9523 -6.8911 -2.7812 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424090189.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:34 Heat of formation + Delta-G solvation = -14.409459 kcal Electronic energy + Delta-G solvation = -27088.512302 eV Core-core repulsion = 23427.771741 eV Total energy + Delta-G solvation = -3660.740561 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.78860 -40.89637 -37.80813 -36.83085 -36.60331 -34.84758 -34.01130 -31.93220 -31.24104 -30.67658 -28.65930 -28.06903 -26.99813 -24.99217 -24.16087 -23.84520 -22.43922 -21.62545 -20.13060 -18.59753 -18.44142 -18.21183 -18.01609 -17.44726 -16.95596 -16.83501 -16.40935 -16.14023 -15.48780 -15.13476 -15.04365 -15.00623 -14.64142 -14.36326 -14.29593 -14.18519 -14.02857 -13.74498 -13.65430 -13.54283 -13.34274 -13.04611 -12.81195 -12.77909 -12.49130 -12.18425 -12.17025 -11.88292 -11.76940 -11.72729 -11.59487 -11.21630 -10.97706 -10.73233 -10.48678 -9.82298 -9.63490 -9.55450 -8.77245 -8.13288 -6.23125 -0.41111 0.07081 1.09334 1.41565 1.42648 1.47281 1.55176 1.92686 2.07698 2.44977 3.14659 3.19897 3.47330 3.58590 3.67475 3.85873 3.92978 4.00746 4.02737 4.12844 4.22862 4.26601 4.30489 4.35751 4.37915 4.47344 4.52886 4.62312 4.68257 4.79966 4.83865 4.88302 4.99242 5.00288 5.17327 5.25216 5.29061 5.33151 5.36860 5.52516 5.58241 5.62162 5.73415 5.85170 5.89862 5.99363 6.05476 6.09919 6.27103 6.31438 6.48329 6.95485 7.04216 7.44872 8.98072 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.025333 B = 0.002397 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.028730 B =11677.649112 C =12168.981368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.606 5.606 3 C 0.155 3.845 4 C -0.094 4.094 5 C -0.120 4.120 6 C -0.124 4.124 7 C -0.115 4.115 8 C -0.072 4.072 9 C -0.113 4.113 10 C -0.122 4.122 11 C -0.118 4.118 12 C -0.125 4.125 13 C -0.064 4.064 14 C 0.488 3.512 15 O -0.576 6.576 16 C 0.085 3.915 17 H 0.111 0.889 18 N -0.819 5.819 19 C -0.079 4.079 20 C 0.041 3.959 21 C -0.540 4.540 22 H 0.055 0.945 23 C 0.001 3.999 24 N -0.929 5.929 25 Si 0.959 3.041 26 H -0.264 1.264 27 H -0.282 1.282 28 H -0.277 1.277 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.138 0.862 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.145 0.855 40 H 0.134 0.866 41 H 0.344 0.656 42 H 0.345 0.655 43 H 0.068 0.932 44 H 0.038 0.962 45 H 0.004 0.996 46 H -0.004 1.004 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.096 24.915 12.738 29.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.338 5.338 3 C 0.033 3.967 4 C -0.095 4.095 5 C -0.138 4.138 6 C -0.142 4.142 7 C -0.132 4.132 8 C -0.072 4.072 9 C -0.131 4.131 10 C -0.139 4.139 11 C -0.136 4.136 12 C -0.143 4.143 13 C -0.065 4.065 14 C 0.275 3.725 15 O -0.456 6.456 16 C -0.031 4.031 17 H 0.129 0.871 18 N -0.347 5.347 19 C -0.117 4.117 20 C 0.004 3.996 21 C -0.579 4.579 22 H 0.073 0.927 23 C -0.196 4.196 24 N -0.570 5.570 25 Si 0.784 3.216 26 H -0.188 1.188 27 H -0.208 1.208 28 H -0.202 1.202 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.136 0.864 33 H 0.095 0.905 34 H 0.132 0.868 35 H 0.156 0.844 36 H 0.168 0.832 37 H 0.166 0.834 38 H 0.167 0.833 39 H 0.163 0.837 40 H 0.152 0.848 41 H 0.157 0.843 42 H 0.158 0.842 43 H 0.087 0.913 44 H 0.057 0.943 45 H 0.022 0.978 46 H 0.014 0.986 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.998 24.271 12.592 28.489 hybrid contribution 0.335 -0.030 -0.628 0.713 sum 8.334 24.241 11.964 28.288 Atomic orbital electron populations 1.22173 0.77111 1.04645 1.03563 1.47946 1.08299 1.05084 1.72479 1.20382 0.97678 0.85617 0.93062 1.20163 0.97857 0.95150 0.96323 1.20791 1.00603 0.99490 0.92919 1.21088 0.98675 0.97800 0.96596 1.21312 0.97647 0.94920 0.99353 1.18410 0.99047 0.97036 0.92707 1.21335 0.96982 0.93871 1.00902 1.21233 0.99842 1.00462 0.92388 1.21213 0.97487 0.96965 0.97887 1.21254 0.98713 0.95623 0.98661 1.18086 0.98680 0.95752 0.93973 1.22401 0.88172 0.87337 0.74595 1.90647 1.15775 1.87866 1.51299 1.21707 0.96868 0.85176 0.99315 0.87114 1.59009 1.23766 1.43674 1.08299 1.21353 0.99198 0.99635 0.91535 1.18807 0.93344 0.92775 0.94660 1.21736 1.31239 1.10301 0.94579 0.92715 1.25892 0.96126 0.95933 1.01684 1.70110 1.36611 1.15732 1.34511 0.85496 0.78023 0.78050 0.80043 1.18847 1.20792 1.20233 0.91203 0.90237 0.88582 0.86354 0.90491 0.86759 0.84385 0.83244 0.83383 0.83319 0.83680 0.84772 0.84263 0.84207 0.91343 0.94282 0.97766 0.98564 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.29 9.29 127.77 1.19 2.47 16 2 N -0.61 -14.94 1.72 -851.12 -1.47 -16.41 16 3 C 0.16 3.50 4.45 85.63 0.38 3.88 16 4 C -0.09 -2.25 5.86 -19.80 -0.12 -2.36 16 5 C -0.12 -2.87 9.07 22.04 0.20 -2.67 16 6 C -0.12 -2.55 9.95 22.04 0.22 -2.33 16 7 C -0.11 -2.17 9.77 22.33 0.22 -1.95 16 8 C -0.07 -1.50 5.74 -21.30 -0.12 -1.62 16 9 C -0.11 -1.80 9.77 22.33 0.22 -1.58 16 10 C -0.12 -1.70 9.95 22.05 0.22 -1.48 16 11 C -0.12 -1.80 9.95 22.05 0.22 -1.58 16 12 C -0.12 -2.38 9.37 22.33 0.21 -2.17 16 13 C -0.06 -1.47 5.74 -21.30 -0.12 -1.59 16 14 C 0.49 15.36 6.10 87.66 0.54 15.89 16 15 O -0.58 -21.72 15.97 -3.05 -0.05 -21.77 16 16 C 0.08 2.84 2.46 44.17 0.11 2.95 16 17 H 0.11 3.42 6.21 -2.39 -0.01 3.41 16 18 N -0.82 -28.40 8.44 -171.79 -1.45 -29.85 16 19 C -0.08 -3.18 4.73 30.60 0.14 -3.04 16 20 C 0.04 2.13 4.86 29.85 0.15 2.28 16 21 C -0.54 -30.53 9.11 25.60 0.23 -30.30 16 22 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 23 C 0.00 0.08 5.46 84.66 0.46 0.54 16 24 N -0.93 -56.44 13.29 21.45 0.28 -56.16 16 25 Si 0.96 44.34 29.54 68.60 2.03 46.36 16 26 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 27 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 28 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 29 H 0.07 1.34 7.71 -2.38 -0.02 1.32 16 30 H 0.08 1.56 6.02 -2.39 -0.01 1.55 16 31 H 0.10 1.37 8.07 -2.38 -0.02 1.35 16 32 H 0.12 1.96 8.04 -2.39 -0.02 1.95 16 33 H 0.08 1.99 7.35 -2.39 -0.02 1.97 16 34 H 0.11 2.78 6.14 -2.91 -0.02 2.76 16 35 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 36 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 37 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 38 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 39 H 0.15 1.46 8.06 -2.91 -0.02 1.43 16 40 H 0.13 2.18 6.97 -2.91 -0.02 2.16 16 41 H 0.34 12.32 8.58 -89.70 -0.77 11.55 16 42 H 0.34 10.39 9.06 -89.69 -0.81 9.57 16 43 H 0.07 2.54 7.23 -2.39 -0.02 2.52 16 44 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.00 0.22 7.75 -2.39 -0.02 0.21 16 46 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 47 H 0.26 14.93 8.31 -92.70 -0.77 14.16 16 Total: -1.00 -73.30 383.65 3.10 -70.20 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: -0.59 Total: 32.29 kcal Atomic # 6 Polarization: -29.01 SS G_CDS: 4.34 Total: -24.67 kcal Atomic # 7 Polarization: -99.78 SS G_CDS: -2.63 Total: -102.41 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.05 Total: -21.77 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -73.30 3.10 -70.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424090189.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.795 kcal (2) G-P(sol) polarization free energy of solvation -73.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds