Wall clock time and date at job start Tue Mar 31 2020 14:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86798 * 119.99990 * 2 1 4 4 H 1.48500 * 109.47138 * 240.00043 * 3 2 1 5 5 H 1.48507 * 109.46995 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47185 * 119.99630 * 3 2 1 7 7 C 1.39946 * 119.99744 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99763 * 197.86115 * 7 2 1 9 9 C 1.41394 * 120.00510 * 17.85220 * 7 2 1 10 10 C 1.40719 * 120.23933 * 24.38937 * 9 7 2 11 11 C 1.37621 * 119.74143 * 180.02562 * 10 9 7 12 12 C 1.38642 * 120.24821 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.74502 * 180.02562 * 12 11 10 14 14 N 1.46900 * 109.46949 * 90.00349 * 13 12 11 15 15 C 1.46845 * 111.00272 * 169.99631 * 14 13 12 16 16 C 1.53034 * 109.52538 * 185.83805 * 15 14 13 17 17 C 1.53117 * 109.27780 * 300.81710 * 16 15 14 18 18 C 1.53001 * 109.52041 * 177.55607 * 17 16 15 19 19 N 1.46509 * 109.46813 * 175.00287 * 18 17 16 20 20 C 1.34427 * 126.81822 * 125.00881 * 19 18 17 21 21 N 1.30836 * 108.07530 * 179.97438 * 20 19 18 22 22 C 1.33249 * 109.82623 * 359.97438 * 21 20 19 23 23 N 1.30711 * 108.94627 * 0.26607 * 22 21 20 24 24 C 1.53125 * 109.15933 * 57.65937 * 17 16 15 25 25 C 1.46849 * 111.00123 * 294.20752 * 14 13 12 26 26 C 1.38631 * 120.50163 * 0.29334 * 12 11 10 27 27 C 1.37626 * 120.24625 * 359.45097 * 26 12 11 28 28 H 0.96996 * 119.99994 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.12858 * 0.02562 * 10 9 7 30 30 H 1.08002 * 119.87671 * 180.02562 * 11 10 9 31 31 H 1.08999 * 109.47406 * 330.00113 * 13 12 11 32 32 H 1.09002 * 109.46585 * 210.00102 * 13 12 11 33 33 H 1.09002 * 109.45794 * 65.82041 * 15 14 13 34 34 H 1.09000 * 109.45856 * 305.85751 * 15 14 13 35 35 H 1.08999 * 109.50107 * 180.88217 * 16 15 14 36 36 H 1.09000 * 109.50456 * 60.76472 * 16 15 14 37 37 H 1.08996 * 109.52718 * 297.69112 * 17 16 15 38 38 H 1.09004 * 109.46986 * 55.00877 * 18 17 16 39 39 H 1.09000 * 109.47755 * 295.00314 * 18 17 16 40 40 H 1.07996 * 125.96492 * 359.96659 * 20 19 18 41 41 H 1.07993 * 125.52419 * 179.97438 * 22 21 20 42 42 H 1.08998 * 109.50229 * 62.28144 * 24 17 16 43 43 H 1.08996 * 109.50210 * 182.40336 * 24 17 16 44 44 H 1.09000 * 109.45964 * 294.18174 * 25 14 13 45 45 H 1.09000 * 109.46146 * 54.14251 * 25 14 13 46 46 H 1.07997 * 119.87807 * 179.70465 * 26 12 11 47 47 H 1.08002 * 120.12295 * 180.27683 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0490 -1.2347 0.2863 9 6 1.3521 -2.4069 -0.3764 10 6 0.2209 -2.3617 -1.2121 11 6 -0.4099 -3.5309 -1.5712 12 6 0.0656 -4.7501 -1.1132 13 6 -0.6335 -6.0236 -1.5139 14 7 -0.0423 -6.5363 -2.7571 15 6 -0.5297 -7.8897 -3.0526 16 6 0.2135 -8.4467 -4.2689 17 6 -0.0210 -7.5262 -5.4698 18 6 0.7688 -8.0447 -6.6732 19 7 0.4512 -7.2342 -7.8516 20 6 1.3235 -6.5836 -8.6408 21 7 0.6459 -5.9787 -9.5825 22 6 -0.6556 -6.2193 -9.4285 23 7 -0.8254 -6.9793 -8.3787 24 6 0.4507 -6.1124 -5.1189 25 6 -0.2993 -5.6230 -3.8779 26 6 1.1759 -4.8061 -0.2850 27 6 1.8256 -3.6499 0.0826 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1509 -1.4130 -1.5703 30 1 -1.2780 -3.4988 -2.2128 31 1 -1.6931 -5.8223 -1.6715 32 1 -0.5181 -6.7654 -0.7237 33 1 -1.5981 -7.8524 -3.2654 34 1 -0.3532 -8.5351 -2.1921 35 1 -0.1596 -9.4451 -4.4974 36 1 1.2804 -8.4972 -4.0517 37 1 -1.0835 -7.5071 -5.7121 38 1 0.5001 -9.0838 -6.8638 39 1 1.8363 -7.9780 -6.4634 40 1 2.3963 -6.5635 -8.5188 41 1 -1.4429 -5.8431 -10.0648 42 1 1.5214 -6.1261 -4.9151 43 1 0.2472 -5.4430 -5.9546 44 1 -1.3687 -5.5964 -4.0868 45 1 0.0446 -4.6221 -3.6169 46 1 1.5349 -5.7609 0.0697 47 1 2.6931 -3.6962 0.7243 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426802854.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:38 Heat of formation + Delta-G solvation = 102.310074 kcal Electronic energy + Delta-G solvation = -26984.171513 eV Core-core repulsion = 23360.785042 eV Total energy + Delta-G solvation = -3623.386471 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.22114 -39.25648 -37.52109 -35.50461 -33.79517 -32.53523 -31.35677 -30.84071 -30.14604 -29.26825 -27.85063 -26.00128 -23.85265 -23.18729 -22.39564 -22.16342 -21.25099 -20.86041 -19.78350 -19.58492 -17.45292 -17.29065 -16.15184 -15.75232 -15.33067 -15.13584 -14.90736 -14.66798 -14.45251 -14.32156 -13.94405 -13.66704 -13.57295 -13.17651 -12.98285 -12.67504 -12.49085 -12.18950 -12.07702 -11.89844 -11.60763 -11.33602 -11.21295 -11.07901 -10.99018 -10.86359 -10.63541 -10.55542 -10.37070 -10.30984 -10.13138 -9.94879 -9.76216 -9.54523 -9.37580 -9.11888 -7.97916 -7.42587 -7.29074 -6.76603 -4.34785 1.47160 2.13214 2.74306 2.81395 3.05684 3.07766 3.09159 3.18662 3.92518 4.09915 4.15412 4.24775 4.48966 4.58693 4.67432 4.77959 4.84758 5.02088 5.13899 5.22467 5.39133 5.41861 5.58326 5.66410 5.68750 5.71401 5.79304 5.88601 5.91735 6.02945 6.05015 6.10911 6.24441 6.26479 6.32493 6.36196 6.39036 6.42026 6.61879 6.94371 7.07473 7.25584 7.37850 7.44420 7.46381 7.62017 7.89128 7.91189 8.05523 8.14400 8.30711 8.64061 8.89860 8.98168 10.17917 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013331 B = 0.002741 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.911521 B =10213.333405 C =11637.984524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.113 3.887 10 C -0.166 4.166 11 C -0.095 4.095 12 C -0.207 4.207 13 C 0.120 3.880 14 N -0.530 5.530 15 C 0.055 3.945 16 C -0.106 4.106 17 C -0.100 4.100 18 C 0.133 3.867 19 N -0.372 5.372 20 C 0.253 3.747 21 N -0.550 5.550 22 C 0.193 3.807 23 N -0.317 5.317 24 C -0.106 4.106 25 C 0.058 3.942 26 C -0.069 4.069 27 C -0.229 4.229 28 H 0.281 0.719 29 H 0.116 0.884 30 H 0.081 0.919 31 H 0.022 0.978 32 H 0.064 0.936 33 H 0.026 0.974 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.217 0.783 41 H 0.214 0.786 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.023 0.977 45 H 0.091 0.909 46 H 0.086 0.914 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.099 -14.318 -12.117 18.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.185 4.185 11 C -0.114 4.114 12 C -0.209 4.209 13 C -0.006 4.006 14 N -0.255 5.255 15 C -0.073 4.073 16 C -0.145 4.145 17 C -0.119 4.119 18 C 0.012 3.988 19 N -0.162 5.162 20 C -0.044 4.044 21 N -0.277 5.277 22 C -0.109 4.109 23 N -0.145 5.145 24 C -0.144 4.144 25 C -0.070 4.070 26 C -0.088 4.088 27 C -0.249 4.249 28 H 0.091 0.909 29 H 0.134 0.866 30 H 0.099 0.901 31 H 0.041 0.959 32 H 0.083 0.917 33 H 0.045 0.955 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.121 0.879 40 H 0.233 0.767 41 H 0.231 0.769 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.041 0.959 45 H 0.110 0.890 46 H 0.104 0.896 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.155 -14.293 -11.964 18.640 hybrid contribution -0.380 0.849 0.052 0.931 sum -0.534 -13.444 -11.912 17.970 Atomic orbital electron populations 1.69823 1.07584 1.29274 1.35201 1.25908 0.94705 1.01284 0.92237 0.86390 0.80181 0.80298 0.79989 1.18814 1.20360 1.19013 1.19568 0.98117 0.91356 1.40271 0.90540 1.17607 0.91032 0.92003 0.88333 1.21275 0.99396 0.96618 1.01200 1.20512 0.98376 0.92920 0.99574 1.18813 1.01678 0.92203 1.08216 1.20714 0.94472 0.95344 0.90034 1.62062 1.59198 1.01016 1.03204 1.22023 0.96256 0.91560 0.97489 1.21558 1.01949 0.97399 0.93563 1.21538 1.00697 0.96615 0.93057 1.22009 1.01207 0.93967 0.81661 1.50569 1.04411 1.38100 1.23157 1.26068 0.98863 0.91455 0.88013 1.70540 1.04522 1.26602 1.26074 1.25983 0.94030 0.95996 0.94937 1.78021 1.00873 1.22019 1.13572 1.21593 1.01072 0.94542 0.97198 1.22055 0.96919 0.98200 0.89842 1.20304 0.94931 0.96204 0.97324 1.20958 1.03761 0.92975 1.07163 0.90859 0.86623 0.90055 0.95935 0.91722 0.95541 0.90830 0.91613 0.90658 0.90053 0.89417 0.87888 0.76669 0.76930 0.90993 0.92442 0.95912 0.89034 0.89559 0.89164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.54 10.95 55.55 0.61 -19.93 16 2 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 3 Si 0.91 18.68 29.60 -169.99 -5.03 13.65 16 4 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.46 -12.30 9.05 -37.74 -0.34 -12.64 16 8 H 0.08 1.95 7.91 -52.48 -0.42 1.54 16 9 C 0.11 2.99 5.58 -106.83 -0.60 2.40 16 10 C -0.17 -4.27 8.70 -38.87 -0.34 -4.60 16 11 C -0.09 -2.17 7.83 -39.66 -0.31 -2.48 16 12 C -0.21 -4.39 4.91 -104.33 -0.51 -4.91 16 13 C 0.12 2.08 5.11 -4.97 -0.03 2.06 16 14 N -0.53 -8.09 4.65 -236.11 -1.10 -9.19 16 15 C 0.06 0.66 5.46 -3.84 -0.02 0.63 16 16 C -0.11 -0.98 5.38 -26.65 -0.14 -1.12 16 17 C -0.10 -0.98 2.35 -90.49 -0.21 -1.20 16 18 C 0.13 1.01 5.95 -4.04 -0.02 0.99 16 19 N -0.37 -3.69 3.21 -62.62 -0.20 -3.89 16 20 C 0.25 2.36 12.63 -90.65 -1.14 1.21 16 21 N -0.55 -6.40 11.19 -15.83 -0.18 -6.57 16 22 C 0.19 2.13 13.03 -91.81 -1.20 0.93 16 23 N -0.32 -3.80 12.52 29.29 0.37 -3.43 16 24 C -0.11 -1.32 5.24 -26.65 -0.14 -1.46 16 25 C 0.06 0.89 5.15 -3.83 -0.02 0.87 16 26 C -0.07 -1.52 9.67 -39.66 -0.38 -1.91 16 27 C -0.23 -5.60 9.80 -38.87 -0.38 -5.98 16 28 H 0.28 6.63 8.30 -40.82 -0.34 6.30 16 29 H 0.12 3.10 6.16 -52.49 -0.32 2.78 16 30 H 0.08 1.73 7.94 -52.49 -0.42 1.31 16 31 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 32 H 0.06 1.05 7.92 -51.93 -0.41 0.63 16 33 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.82 8.02 -51.93 -0.42 0.41 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.55 8.09 -51.93 -0.42 0.13 16 40 H 0.22 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.21 1.62 8.06 -52.49 -0.42 1.20 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 0.77 7.84 -51.93 -0.41 0.36 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.09 1.67 5.74 -51.93 -0.30 1.38 16 46 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 47 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 379.54 15.07 5.72 5.72 Total: -1.00 -30.23 379.54 -13.00 -43.23 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -7.31 Total: 5.79 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -5.88 Total: -25.38 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: -0.50 Total: -43.01 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.23 -13.00 -43.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426802854.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.543 kcal (2) G-P(sol) polarization free energy of solvation -30.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds