Wall clock time and date at job start Tue Mar 31 2020 14:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86798 * 119.99990 * 2 1 4 4 H 1.48500 * 109.47138 * 240.00043 * 3 2 1 5 5 H 1.48507 * 109.46995 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47185 * 119.99630 * 3 2 1 7 7 C 1.39946 * 119.99744 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99763 * 197.86115 * 7 2 1 9 9 C 1.41394 * 120.00510 * 17.85220 * 7 2 1 10 10 C 1.40719 * 120.23933 * 24.38937 * 9 7 2 11 11 C 1.37621 * 119.74143 * 180.02562 * 10 9 7 12 12 C 1.38642 * 120.24821 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.74502 * 180.02562 * 12 11 10 14 14 N 1.46900 * 109.46949 * 90.00349 * 13 12 11 15 15 C 1.46845 * 111.00272 * 169.99631 * 14 13 12 16 16 C 1.53034 * 109.52538 * 185.83805 * 15 14 13 17 17 C 1.53117 * 109.27780 * 300.81710 * 16 15 14 18 18 C 1.53001 * 109.52041 * 177.55607 * 17 16 15 19 19 N 1.46509 * 109.46813 * 175.00287 * 18 17 16 20 20 C 1.34427 * 126.81822 * 125.00881 * 19 18 17 21 21 N 1.30836 * 108.07530 * 179.97438 * 20 19 18 22 22 C 1.33249 * 109.82623 * 359.97438 * 21 20 19 23 23 N 1.30711 * 108.94627 * 0.26607 * 22 21 20 24 24 C 1.53125 * 109.15933 * 57.65937 * 17 16 15 25 25 C 1.46849 * 111.00123 * 294.20752 * 14 13 12 26 26 C 1.38631 * 120.50163 * 0.29334 * 12 11 10 27 27 C 1.37626 * 120.24625 * 359.45097 * 26 12 11 28 28 H 0.96996 * 119.99994 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.12858 * 0.02562 * 10 9 7 30 30 H 1.08002 * 119.87671 * 180.02562 * 11 10 9 31 31 H 1.08999 * 109.47406 * 330.00113 * 13 12 11 32 32 H 1.09002 * 109.46585 * 210.00102 * 13 12 11 33 33 H 1.09002 * 109.45794 * 65.82041 * 15 14 13 34 34 H 1.09000 * 109.45856 * 305.85751 * 15 14 13 35 35 H 1.08999 * 109.50107 * 180.88217 * 16 15 14 36 36 H 1.09000 * 109.50456 * 60.76472 * 16 15 14 37 37 H 1.08996 * 109.52718 * 297.69112 * 17 16 15 38 38 H 1.09004 * 109.46986 * 55.00877 * 18 17 16 39 39 H 1.09000 * 109.47755 * 295.00314 * 18 17 16 40 40 H 1.07996 * 125.96492 * 359.96659 * 20 19 18 41 41 H 1.07993 * 125.52419 * 179.97438 * 22 21 20 42 42 H 1.08998 * 109.50229 * 62.28144 * 24 17 16 43 43 H 1.08996 * 109.50210 * 182.40336 * 24 17 16 44 44 H 1.09000 * 109.45964 * 294.18174 * 25 14 13 45 45 H 1.09000 * 109.46146 * 54.14251 * 25 14 13 46 46 H 1.07997 * 119.87807 * 179.70465 * 26 12 11 47 47 H 1.08002 * 120.12295 * 180.27683 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0490 -1.2347 0.2863 9 6 1.3521 -2.4069 -0.3764 10 6 0.2209 -2.3617 -1.2121 11 6 -0.4099 -3.5309 -1.5712 12 6 0.0656 -4.7501 -1.1132 13 6 -0.6335 -6.0236 -1.5139 14 7 -0.0423 -6.5363 -2.7571 15 6 -0.5297 -7.8897 -3.0526 16 6 0.2135 -8.4467 -4.2689 17 6 -0.0210 -7.5262 -5.4698 18 6 0.7688 -8.0447 -6.6732 19 7 0.4512 -7.2342 -7.8516 20 6 1.3235 -6.5836 -8.6408 21 7 0.6459 -5.9787 -9.5825 22 6 -0.6556 -6.2193 -9.4285 23 7 -0.8254 -6.9793 -8.3787 24 6 0.4507 -6.1124 -5.1189 25 6 -0.2993 -5.6230 -3.8779 26 6 1.1759 -4.8061 -0.2850 27 6 1.8256 -3.6499 0.0826 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1509 -1.4130 -1.5703 30 1 -1.2780 -3.4988 -2.2128 31 1 -1.6931 -5.8223 -1.6715 32 1 -0.5181 -6.7654 -0.7237 33 1 -1.5981 -7.8524 -3.2654 34 1 -0.3532 -8.5351 -2.1921 35 1 -0.1596 -9.4451 -4.4974 36 1 1.2804 -8.4972 -4.0517 37 1 -1.0835 -7.5071 -5.7121 38 1 0.5001 -9.0838 -6.8638 39 1 1.8363 -7.9780 -6.4634 40 1 2.3963 -6.5635 -8.5188 41 1 -1.4429 -5.8431 -10.0648 42 1 1.5214 -6.1261 -4.9151 43 1 0.2472 -5.4430 -5.9546 44 1 -1.3687 -5.5964 -4.0868 45 1 0.0446 -4.6221 -3.6169 46 1 1.5349 -5.7609 0.0697 47 1 2.6931 -3.6962 0.7243 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426802854.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:37 Heat of formation + Delta-G solvation = 88.043154 kcal Electronic energy + Delta-G solvation = -26984.790173 eV Core-core repulsion = 23360.785042 eV Total energy + Delta-G solvation = -3624.005131 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.95966 -40.43112 -39.16841 -36.62245 -35.45425 -33.64142 -32.13766 -31.95904 -31.65396 -31.11243 -29.08973 -27.36918 -25.25783 -24.20214 -23.55944 -22.90237 -22.74499 -22.06464 -21.48901 -20.53936 -19.21339 -18.14926 -17.20981 -17.06717 -16.63338 -16.31616 -16.04419 -15.85384 -15.66196 -15.25581 -15.21194 -15.08824 -14.87076 -14.32336 -14.22966 -13.91821 -13.82632 -13.55135 -13.33866 -13.22543 -13.01403 -12.78224 -12.68556 -12.43848 -12.35411 -12.19835 -12.05692 -11.77398 -11.56784 -11.45566 -11.27771 -11.18921 -10.98803 -10.93174 -10.74754 -10.48462 -9.38112 -9.24422 -9.09901 -8.63946 -6.32631 0.74608 0.95089 1.16816 1.36440 1.47581 1.49427 1.52373 2.04857 2.19704 2.67024 3.14031 3.44297 3.56076 3.71080 3.75525 3.82964 4.01640 4.12625 4.20175 4.28336 4.29207 4.33730 4.44108 4.50506 4.55494 4.62871 4.65030 4.67124 4.77663 4.84785 4.85390 4.98746 5.02708 5.05957 5.13891 5.15918 5.17952 5.34817 5.38158 5.44166 5.48659 5.51269 5.71656 5.96881 5.97574 6.10920 6.12124 6.27278 6.36050 6.40833 6.71317 6.95134 7.05395 7.16540 8.32844 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013331 B = 0.002741 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.911521 B =10213.333405 C =11637.984524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.035 3.965 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.258 1.258 7 C -0.503 4.503 8 H 0.075 0.925 9 C 0.080 3.920 10 C -0.190 4.190 11 C -0.097 4.097 12 C -0.192 4.192 13 C 0.124 3.876 14 N -0.533 5.533 15 C 0.051 3.949 16 C -0.098 4.098 17 C -0.090 4.090 18 C 0.132 3.868 19 N -0.375 5.375 20 C 0.256 3.744 21 N -0.583 5.583 22 C 0.185 3.815 23 N -0.349 5.349 24 C -0.095 4.095 25 C 0.060 3.940 26 C -0.070 4.070 27 C -0.243 4.243 28 H 0.287 0.713 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.021 0.979 32 H 0.085 0.915 33 H 0.023 0.977 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.107 0.893 39 H 0.134 0.866 40 H 0.255 0.745 41 H 0.233 0.767 42 H 0.075 0.925 43 H 0.042 0.958 44 H 0.013 0.987 45 H 0.055 0.945 46 H 0.118 0.882 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.205 -16.729 -12.614 20.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.180 4.180 3 Si 0.801 3.199 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.182 1.182 7 C -0.533 4.533 8 H 0.093 0.907 9 C 0.078 3.922 10 C -0.210 4.210 11 C -0.115 4.115 12 C -0.194 4.194 13 C -0.003 4.003 14 N -0.258 5.258 15 C -0.077 4.077 16 C -0.136 4.136 17 C -0.109 4.109 18 C 0.012 3.988 19 N -0.165 5.165 20 C -0.041 4.041 21 N -0.311 5.311 22 C -0.118 4.118 23 N -0.178 5.178 24 C -0.133 4.133 25 C -0.068 4.068 26 C -0.088 4.088 27 C -0.263 4.263 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.039 0.961 32 H 0.103 0.897 33 H 0.041 0.959 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.125 0.875 39 H 0.152 0.848 40 H 0.271 0.729 41 H 0.249 0.751 42 H 0.094 0.906 43 H 0.060 0.940 44 H 0.031 0.969 45 H 0.074 0.926 46 H 0.136 0.864 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.948 -16.737 -12.455 20.884 hybrid contribution -0.794 1.445 0.190 1.660 sum 0.154 -15.292 -12.265 19.603 Atomic orbital electron populations 1.69886 1.09043 1.30466 1.36014 1.26759 0.95462 1.04529 0.91238 0.85281 0.78813 0.75699 0.80093 1.18568 1.19269 1.18194 1.19814 0.98352 0.92658 1.42434 0.90730 1.17938 0.91854 0.93163 0.89275 1.21207 1.00422 0.96798 1.02558 1.20675 0.98458 0.92996 0.99416 1.19241 1.00728 0.93309 1.06073 1.20658 0.93889 0.93892 0.91839 1.62002 1.59216 1.02448 1.02126 1.22199 0.96476 0.89489 0.99523 1.21541 1.02282 0.98218 0.91568 1.21396 0.99796 0.95040 0.94684 1.22213 1.02547 0.94344 0.79706 1.50704 1.03848 1.38320 1.23665 1.26824 1.00242 0.90001 0.86991 1.70540 1.05001 1.27941 1.27596 1.26457 0.94592 0.95706 0.94996 1.77948 1.02539 1.23016 1.14285 1.21464 1.00741 0.96109 0.95009 1.21955 0.96616 0.96869 0.91355 1.20628 0.94658 0.96716 0.96822 1.21178 1.04350 0.93231 1.07504 0.90283 0.88735 0.89147 0.96078 0.89664 0.95871 0.89330 0.88695 0.89657 0.92094 0.87519 0.84821 0.72944 0.75055 0.90644 0.93972 0.96896 0.92643 0.86443 0.88587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.59 10.95 21.83 0.24 -44.36 16 2 C 0.03 1.79 5.14 85.26 0.44 2.23 16 3 Si 0.98 39.11 29.60 68.60 2.03 41.14 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 6 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 7 C -0.50 -27.81 9.05 23.46 0.21 -27.60 16 8 H 0.07 3.97 7.91 -2.91 -0.02 3.94 16 9 C 0.08 4.42 5.58 -21.29 -0.12 4.30 16 10 C -0.19 -10.29 8.70 22.73 0.20 -10.10 16 11 C -0.10 -4.55 7.83 22.22 0.17 -4.37 16 12 C -0.19 -8.03 4.91 -19.67 -0.10 -8.12 16 13 C 0.12 4.06 5.11 85.56 0.44 4.50 16 14 N -0.53 -15.20 4.65 -900.93 -4.19 -19.39 16 15 C 0.05 1.04 5.46 86.33 0.47 1.51 16 16 C -0.10 -1.41 5.38 30.64 0.16 -1.25 16 17 C -0.09 -1.54 2.35 -10.71 -0.03 -1.56 16 18 C 0.13 1.55 5.95 86.38 0.51 2.06 16 19 N -0.38 -6.66 3.21 -352.04 -1.13 -7.79 16 20 C 0.26 4.23 12.63 180.36 2.28 6.51 16 21 N -0.58 -13.00 11.19 -204.01 -2.28 -15.28 16 22 C 0.19 3.99 13.03 180.76 2.36 6.35 16 23 N -0.35 -8.10 12.52 -61.25 -0.77 -8.87 16 24 C -0.10 -2.26 5.24 30.65 0.16 -2.10 16 25 C 0.06 1.84 5.15 86.32 0.44 2.28 16 26 C -0.07 -3.01 9.67 22.22 0.21 -2.80 16 27 C -0.24 -12.06 9.80 22.73 0.22 -11.84 16 28 H 0.29 14.02 8.30 -92.71 -0.77 13.25 16 29 H 0.09 5.42 6.16 -2.91 -0.02 5.40 16 30 H 0.09 3.98 7.94 -2.91 -0.02 3.96 16 31 H 0.02 0.70 8.06 -2.39 -0.02 0.68 16 32 H 0.09 2.47 7.92 -2.39 -0.02 2.45 16 33 H 0.02 0.50 8.14 -2.39 -0.02 0.49 16 34 H 0.09 1.60 8.02 -2.39 -0.02 1.59 16 35 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.06 1.33 8.09 -2.39 -0.02 1.31 16 38 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.13 0.78 8.09 -2.39 -0.02 0.76 16 40 H 0.25 1.75 8.06 -2.91 -0.02 1.73 16 41 H 0.23 3.50 8.06 -2.91 -0.02 3.48 16 42 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.04 1.12 7.84 -2.39 -0.02 1.10 16 44 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 45 H 0.06 2.08 5.74 -2.39 -0.01 2.07 16 46 H 0.12 4.32 8.06 -2.91 -0.02 4.29 16 47 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -69.54 379.54 2.90 -66.64 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: 0.95 Total: 27.90 kcal Atomic # 6 Polarization: -48.04 SS G_CDS: 8.04 Total: -39.99 kcal Atomic # 7 Polarization: -87.56 SS G_CDS: -8.13 Total: -95.69 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -69.54 2.90 -66.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426802854.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.684 kcal (2) G-P(sol) polarization free energy of solvation -69.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds