Wall clock time and date at job start Tue Mar 31 2020 15:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35373 * 126.97196 * 2 1 4 4 C 1.50694 * 126.73610 * 359.95152 * 3 2 1 5 5 H 1.09005 * 109.47073 * 344.94471 * 4 3 2 6 6 C 1.52998 * 109.47367 * 104.94349 * 4 3 2 7 7 N 1.46901 * 109.47352 * 224.94789 * 4 3 2 8 8 C 1.46898 * 111.00463 * 155.42010 * 7 4 3 9 9 C 1.52997 * 109.47053 * 182.68864 * 8 7 4 10 10 C 1.50695 * 115.56637 * 328.53667 * 9 8 7 11 11 H 1.08004 * 119.99862 * 271.63102 * 10 9 8 12 12 C 1.37873 * 119.99960 * 91.62078 * 10 9 8 13 13 N 1.31513 * 120.00209 * 186.09492 * 12 10 9 14 14 Si 1.86809 * 120.00041 * 6.10256 * 12 10 9 15 15 H 1.48494 * 109.47006 * 85.32620 * 14 12 10 16 16 H 1.48500 * 109.46813 * 205.32812 * 14 12 10 17 17 H 1.48494 * 109.46731 * 325.32654 * 14 12 10 18 18 C 1.53004 * 117.49432 * 182.84709 * 9 8 7 19 19 C 1.53004 * 60.03055 * 252.50259 * 18 9 8 20 20 N 1.33776 * 106.53142 * 180.20919 * 3 2 1 21 21 N 1.28608 * 109.06672 * 359.62457 * 20 3 2 22 22 N 1.28728 * 110.23042 * 0.38974 * 21 20 3 23 23 C 1.40242 * 125.93995 * 179.73748 * 22 21 20 24 24 C 1.38825 * 120.06778 * 41.13822 * 23 22 21 25 25 C 1.38120 * 119.93364 * 179.71824 * 24 23 22 26 26 C 1.38276 * 120.06768 * 0.55270 * 25 24 23 27 27 C 1.38276 * 120.12806 * 359.72380 * 26 25 24 28 28 C 1.38125 * 120.06872 * 359.97438 * 27 26 25 29 29 H 1.08995 * 109.47266 * 94.77198 * 1 2 3 30 30 H 1.08999 * 109.47286 * 214.77393 * 1 2 3 31 31 H 1.09000 * 109.46739 * 334.77199 * 1 2 3 32 32 H 1.08992 * 109.47167 * 60.00251 * 6 4 3 33 33 H 1.08999 * 109.47014 * 180.02562 * 6 4 3 34 34 H 1.09004 * 109.46864 * 300.00148 * 6 4 3 35 35 H 1.00903 * 110.99988 * 31.46129 * 7 4 3 36 36 H 1.09004 * 109.46995 * 62.68883 * 8 7 4 37 37 H 1.08999 * 109.46743 * 302.69485 * 8 7 4 38 38 H 0.96997 * 120.00370 * 180.02562 * 13 12 10 39 39 H 1.08994 * 117.50036 * 0.02562 * 18 9 8 40 40 H 1.08998 * 117.49484 * 144.99938 * 18 9 8 41 41 H 1.08995 * 117.50052 * 107.50862 * 19 18 9 42 42 H 1.09005 * 117.49478 * 252.52448 * 19 18 9 43 43 H 1.08002 * 120.02692 * 359.97438 * 24 23 22 44 44 H 1.07997 * 119.96502 * 180.27564 * 25 24 23 45 45 H 1.08001 * 119.93632 * 179.73905 * 26 25 24 46 46 H 1.07998 * 119.96658 * 180.02562 * 27 26 25 47 47 H 1.07997 * 120.03079 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3212 1.0815 0.0000 4 6 1.8984 2.5280 -0.0010 5 1 0.8441 2.5982 -0.2687 6 6 2.1114 3.1226 1.3925 7 7 2.7026 3.2725 -0.9793 8 6 1.9918 4.4723 -1.4411 9 6 2.8297 5.1834 -2.5055 10 6 4.3232 5.0546 -2.3506 11 1 4.8669 5.7666 -1.7474 12 6 4.9954 4.0278 -2.9789 13 7 6.2770 3.8432 -2.7489 14 14 4.0857 2.8988 -4.1568 15 1 4.0614 3.5108 -5.5096 16 1 4.7786 1.5869 -4.2194 17 1 2.6941 2.7013 -3.6777 18 6 2.2886 6.4996 -3.0675 19 6 2.2687 5.2352 -3.9288 20 7 3.5747 0.6144 -0.0047 21 7 3.5439 -0.6713 0.0005 22 7 2.3257 -1.0874 0.0003 23 6 1.9138 -2.4280 0.0000 24 6 2.5743 -3.3588 0.7902 25 6 2.1625 -4.6772 0.7922 26 6 1.1009 -5.0726 -0.0006 27 6 0.4447 -4.1489 -0.7931 28 6 0.8479 -2.8278 -0.7946 29 1 -0.3633 -0.0855 -1.0240 30 1 -0.3634 -0.8441 0.5861 31 1 -0.3633 0.9297 0.4380 32 1 3.1656 3.0525 1.6602 33 1 1.8052 4.1687 1.3918 34 1 1.5147 2.5701 2.1183 35 1 2.9620 2.6841 -1.7569 36 1 1.8280 5.1444 -0.5987 37 1 1.0311 4.1837 -1.8677 38 1 6.7501 3.1210 -3.1912 39 1 1.3360 6.8591 -2.6786 40 1 3.0129 7.2725 -3.3247 41 1 1.3028 4.7627 -4.1069 42 1 2.9801 5.1762 -4.7526 43 1 3.4066 -3.0514 1.4060 44 1 2.6732 -5.4009 1.4102 45 1 0.7834 -6.1049 -0.0006 46 1 -0.3845 -4.4605 -1.4110 47 1 0.3346 -2.1067 -1.4135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430749125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:08 Heat of formation + Delta-G solvation = 166.591761 kcal Electronic energy + Delta-G solvation = -27819.425710 eV Core-core repulsion = 24198.826702 eV Total energy + Delta-G solvation = -3620.599008 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.37214 -39.61198 -37.57801 -35.79820 -34.53538 -32.76500 -31.84061 -31.41076 -30.23094 -29.36547 -27.38795 -25.67976 -24.75293 -24.21747 -23.41302 -22.38456 -21.59877 -20.86422 -19.98706 -18.76436 -18.01854 -16.79302 -16.63525 -16.43065 -15.30705 -15.09521 -14.99153 -14.78451 -14.44484 -14.03681 -13.91359 -13.64600 -13.53960 -13.33805 -13.24695 -12.92048 -12.57718 -12.39062 -12.17999 -11.96912 -11.85758 -11.77285 -11.56342 -11.38360 -11.06124 -10.79326 -10.73744 -10.65864 -10.39231 -10.16266 -9.99073 -9.51464 -9.30606 -9.03713 -8.98792 -8.84517 -8.37928 -8.26496 -7.42283 -5.86896 -3.83268 0.45144 0.82538 1.72343 2.22506 2.70136 3.20516 3.34865 3.42630 3.49921 4.23142 4.33296 4.40820 4.57130 4.59533 4.64820 4.66823 4.84549 4.86012 4.93041 5.02155 5.14809 5.21068 5.34106 5.43693 5.45658 5.54639 5.62788 5.63243 5.74285 5.80419 5.94660 5.95341 6.01637 6.05487 6.09778 6.16352 6.25054 6.27378 6.29091 6.39438 6.50934 6.66694 6.74049 6.78191 6.81423 7.13847 7.16603 7.85474 8.07447 8.26621 8.66761 8.73399 9.16918 9.78018 11.27163 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016646 B = 0.003518 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.644123 B = 7956.775526 C = 8347.317634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.022 4.022 3 C -0.007 4.007 4 C 0.166 3.834 5 H 0.048 0.952 6 C -0.131 4.131 7 N -0.643 5.643 8 C 0.099 3.901 9 C 0.004 3.996 10 C -0.462 4.462 11 H 0.078 0.922 12 C 0.090 3.910 13 N -0.893 5.893 14 Si 0.879 3.121 15 H -0.285 1.285 16 H -0.299 1.299 17 H -0.272 1.272 18 C -0.179 4.179 19 C -0.215 4.215 20 N -0.218 5.218 21 N -0.083 5.083 22 N -0.256 5.256 23 C 0.127 3.873 24 C -0.096 4.096 25 C -0.104 4.104 26 C -0.111 4.111 27 C -0.104 4.104 28 C -0.112 4.112 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.045 0.955 35 H 0.345 0.655 36 H 0.065 0.935 37 H 0.003 0.997 38 H 0.262 0.738 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.138 0.862 44 H 0.136 0.864 45 H 0.132 0.868 46 H 0.135 0.865 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.283 -16.794 7.175 25.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.151 4.151 3 C -0.144 4.144 4 C 0.054 3.946 5 H 0.065 0.935 6 C -0.190 4.190 7 N -0.277 5.277 8 C -0.030 4.030 9 C 0.003 3.997 10 C -0.500 4.500 11 H 0.096 0.904 12 C -0.112 4.112 13 N -0.531 5.531 14 Si 0.710 3.290 15 H -0.212 1.212 16 H -0.226 1.226 17 H -0.198 1.198 18 C -0.217 4.217 19 C -0.252 4.252 20 N -0.084 5.084 21 N -0.060 5.060 22 N -0.045 5.045 23 C 0.037 3.963 24 C -0.116 4.116 25 C -0.122 4.122 26 C -0.129 4.129 27 C -0.122 4.122 28 C -0.133 4.133 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.167 0.833 36 H 0.083 0.917 37 H 0.021 0.979 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.087 0.913 42 H 0.104 0.896 43 H 0.155 0.845 44 H 0.154 0.846 45 H 0.150 0.850 46 H 0.153 0.847 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.206 -16.936 7.604 23.997 hybrid contribution -2.096 -0.977 -1.458 2.734 sum -17.302 -17.913 6.146 25.652 Atomic orbital electron populations 1.20401 0.85988 1.04349 1.03164 1.22096 0.96144 0.86119 1.10757 1.21975 0.89246 0.96753 1.06408 1.19872 0.94607 0.83959 0.96127 0.93452 1.21739 1.03126 1.00241 0.93851 1.60497 1.40901 1.07902 1.18436 1.21618 0.92114 0.91900 0.97370 1.19561 0.96268 0.94922 0.88956 1.20005 0.86799 1.12808 1.30356 0.90434 1.24777 0.94355 0.95946 0.96100 1.69846 1.08691 1.31651 1.42883 0.87059 0.79711 0.80337 0.81930 1.21152 1.22618 1.19847 1.22836 1.00854 0.92145 1.05819 1.23107 1.00853 1.03756 0.97484 1.75265 1.20318 0.99235 1.13600 1.78537 1.00168 1.07430 1.19880 1.44626 1.05740 1.05218 1.48876 1.17602 0.98118 0.80355 1.00259 1.21126 0.99803 0.92817 0.97841 1.21118 0.96935 0.95023 0.99158 1.21352 0.95599 1.00070 0.95919 1.21057 1.00148 0.91868 0.99141 1.21141 0.96647 0.97429 0.98056 0.90321 0.90750 0.89040 0.91044 0.91899 0.93639 0.83262 0.91667 0.97907 0.92836 0.91161 0.89457 0.91323 0.89612 0.84459 0.84633 0.85042 0.84668 0.84824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 8.50 36.01 0.31 -0.48 16 2 C -0.02 -0.33 6.82 -81.71 -0.56 -0.88 16 3 C -0.01 -0.12 5.74 -82.77 -0.47 -0.60 16 4 C 0.17 2.97 2.95 -68.87 -0.20 2.77 16 5 H 0.05 0.73 6.82 -51.93 -0.35 0.37 16 6 C -0.13 -2.12 9.39 37.16 0.35 -1.77 16 7 N -0.64 -14.38 5.43 -107.96 -0.59 -14.97 16 8 C 0.10 2.09 5.67 -3.83 -0.02 2.07 16 9 C 0.00 0.10 1.44 -155.62 -0.22 -0.13 16 10 C -0.46 -13.27 8.68 -34.44 -0.30 -13.57 16 11 H 0.08 2.45 8.06 -52.48 -0.42 2.03 16 12 C 0.09 2.68 5.21 -17.82 -0.09 2.59 16 13 N -0.89 -28.50 13.96 55.43 0.77 -27.72 16 14 Si 0.88 23.26 22.67 -169.99 -3.85 19.41 16 15 H -0.28 -7.35 6.87 56.52 0.39 -6.96 16 16 H -0.30 -8.20 7.11 56.52 0.40 -7.80 16 17 H -0.27 -6.79 5.88 56.52 0.33 -6.46 16 18 C -0.18 -3.70 9.95 -26.73 -0.27 -3.96 16 19 C -0.21 -4.75 7.14 -26.69 -0.19 -4.94 16 20 N -0.22 -4.74 12.39 33.29 0.41 -4.32 16 21 N -0.08 -1.62 12.94 60.35 0.78 -0.84 16 22 N -0.26 -4.03 3.47 -6.77 -0.02 -4.05 16 23 C 0.13 1.55 6.14 -83.57 -0.51 1.04 16 24 C -0.10 -1.01 9.78 -39.41 -0.39 -1.39 16 25 C -0.10 -0.78 10.04 -39.61 -0.40 -1.17 16 26 C -0.11 -0.71 10.04 -39.55 -0.40 -1.11 16 27 C -0.10 -0.72 10.04 -39.61 -0.40 -1.12 16 28 C -0.11 -1.07 8.61 -39.40 -0.34 -1.41 16 29 H 0.08 0.67 7.68 -51.93 -0.40 0.27 16 30 H 0.07 0.59 7.58 -51.93 -0.39 0.20 16 31 H 0.09 0.79 7.37 -51.93 -0.38 0.41 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.06 0.95 7.48 -51.93 -0.39 0.57 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.35 8.52 4.58 -39.29 -0.18 8.34 16 36 H 0.07 1.28 7.47 -51.93 -0.39 0.89 16 37 H 0.00 0.06 7.74 -51.93 -0.40 -0.34 16 38 H 0.26 8.00 8.31 -40.82 -0.34 7.66 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 41 H 0.07 1.38 8.04 -51.93 -0.42 0.96 16 42 H 0.09 2.02 6.13 -51.93 -0.32 1.70 16 43 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 44 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 45 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 46 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 47 H 0.13 1.17 6.66 -52.49 -0.35 0.82 16 LS Contribution 375.57 15.07 5.66 5.66 Total: -1.00 -35.44 375.57 -7.94 -43.38 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -7.00 Total: 7.52 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: -4.10 Total: -24.06 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 1.36 Total: -51.91 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -3.85 Total: 19.41 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.44 -7.94 -43.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430749125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.971 kcal (2) G-P(sol) polarization free energy of solvation -35.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds