Wall clock time and date at job start Tue Mar 31 2020 15:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35373 * 126.97196 * 2 1 4 4 C 1.50694 * 126.73610 * 359.95152 * 3 2 1 5 5 H 1.09005 * 109.47073 * 344.94471 * 4 3 2 6 6 C 1.52998 * 109.47367 * 104.94349 * 4 3 2 7 7 N 1.46901 * 109.47352 * 224.94789 * 4 3 2 8 8 C 1.46898 * 111.00463 * 155.42010 * 7 4 3 9 9 C 1.52997 * 109.47053 * 182.68864 * 8 7 4 10 10 C 1.50695 * 115.56637 * 328.53667 * 9 8 7 11 11 H 1.08004 * 119.99862 * 271.63102 * 10 9 8 12 12 C 1.37873 * 119.99960 * 91.62078 * 10 9 8 13 13 N 1.31513 * 120.00209 * 186.09492 * 12 10 9 14 14 Si 1.86809 * 120.00041 * 6.10256 * 12 10 9 15 15 H 1.48494 * 109.47006 * 85.32620 * 14 12 10 16 16 H 1.48500 * 109.46813 * 205.32812 * 14 12 10 17 17 H 1.48494 * 109.46731 * 325.32654 * 14 12 10 18 18 C 1.53004 * 117.49432 * 182.84709 * 9 8 7 19 19 C 1.53004 * 60.03055 * 252.50259 * 18 9 8 20 20 N 1.33776 * 106.53142 * 180.20919 * 3 2 1 21 21 N 1.28608 * 109.06672 * 359.62457 * 20 3 2 22 22 N 1.28728 * 110.23042 * 0.38974 * 21 20 3 23 23 C 1.40242 * 125.93995 * 179.73748 * 22 21 20 24 24 C 1.38825 * 120.06778 * 41.13822 * 23 22 21 25 25 C 1.38120 * 119.93364 * 179.71824 * 24 23 22 26 26 C 1.38276 * 120.06768 * 0.55270 * 25 24 23 27 27 C 1.38276 * 120.12806 * 359.72380 * 26 25 24 28 28 C 1.38125 * 120.06872 * 359.97438 * 27 26 25 29 29 H 1.08995 * 109.47266 * 94.77198 * 1 2 3 30 30 H 1.08999 * 109.47286 * 214.77393 * 1 2 3 31 31 H 1.09000 * 109.46739 * 334.77199 * 1 2 3 32 32 H 1.08992 * 109.47167 * 60.00251 * 6 4 3 33 33 H 1.08999 * 109.47014 * 180.02562 * 6 4 3 34 34 H 1.09004 * 109.46864 * 300.00148 * 6 4 3 35 35 H 1.00903 * 110.99988 * 31.46129 * 7 4 3 36 36 H 1.09004 * 109.46995 * 62.68883 * 8 7 4 37 37 H 1.08999 * 109.46743 * 302.69485 * 8 7 4 38 38 H 0.96997 * 120.00370 * 180.02562 * 13 12 10 39 39 H 1.08994 * 117.50036 * 0.02562 * 18 9 8 40 40 H 1.08998 * 117.49484 * 144.99938 * 18 9 8 41 41 H 1.08995 * 117.50052 * 107.50862 * 19 18 9 42 42 H 1.09005 * 117.49478 * 252.52448 * 19 18 9 43 43 H 1.08002 * 120.02692 * 359.97438 * 24 23 22 44 44 H 1.07997 * 119.96502 * 180.27564 * 25 24 23 45 45 H 1.08001 * 119.93632 * 179.73905 * 26 25 24 46 46 H 1.07998 * 119.96658 * 180.02562 * 27 26 25 47 47 H 1.07997 * 120.03079 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3212 1.0815 0.0000 4 6 1.8984 2.5280 -0.0010 5 1 0.8441 2.5982 -0.2687 6 6 2.1114 3.1226 1.3925 7 7 2.7026 3.2725 -0.9793 8 6 1.9918 4.4723 -1.4411 9 6 2.8297 5.1834 -2.5055 10 6 4.3232 5.0546 -2.3506 11 1 4.8669 5.7666 -1.7474 12 6 4.9954 4.0278 -2.9789 13 7 6.2770 3.8432 -2.7489 14 14 4.0857 2.8988 -4.1568 15 1 4.0614 3.5108 -5.5096 16 1 4.7786 1.5869 -4.2194 17 1 2.6941 2.7013 -3.6777 18 6 2.2886 6.4996 -3.0675 19 6 2.2687 5.2352 -3.9288 20 7 3.5747 0.6144 -0.0047 21 7 3.5439 -0.6713 0.0005 22 7 2.3257 -1.0874 0.0003 23 6 1.9138 -2.4280 0.0000 24 6 2.5743 -3.3588 0.7902 25 6 2.1625 -4.6772 0.7922 26 6 1.1009 -5.0726 -0.0006 27 6 0.4447 -4.1489 -0.7931 28 6 0.8479 -2.8278 -0.7946 29 1 -0.3633 -0.0855 -1.0240 30 1 -0.3634 -0.8441 0.5861 31 1 -0.3633 0.9297 0.4380 32 1 3.1656 3.0525 1.6602 33 1 1.8052 4.1687 1.3918 34 1 1.5147 2.5701 2.1183 35 1 2.9620 2.6841 -1.7569 36 1 1.8280 5.1444 -0.5987 37 1 1.0311 4.1837 -1.8677 38 1 6.7501 3.1210 -3.1912 39 1 1.3360 6.8591 -2.6786 40 1 3.0129 7.2725 -3.3247 41 1 1.3028 4.7627 -4.1069 42 1 2.9801 5.1762 -4.7526 43 1 3.4066 -3.0514 1.4060 44 1 2.6732 -5.4009 1.4102 45 1 0.7834 -6.1049 -0.0006 46 1 -0.3845 -4.4605 -1.4110 47 1 0.3346 -2.1067 -1.4135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430749125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:07 Heat of formation + Delta-G solvation = 141.764425 kcal Electronic energy + Delta-G solvation = -27820.502304 eV Core-core repulsion = 24198.826702 eV Total energy + Delta-G solvation = -3621.675602 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.57794 -40.31808 -39.24939 -37.24426 -35.60092 -34.10899 -33.89656 -32.09982 -31.26759 -30.51833 -28.42710 -27.71509 -26.41056 -25.22294 -24.32773 -23.45302 -23.22502 -21.85548 -21.21131 -20.68350 -19.06628 -18.42584 -17.75042 -17.38629 -16.88331 -16.62413 -16.19112 -15.89832 -15.50667 -15.15911 -15.11669 -15.00371 -14.74228 -14.62806 -14.20449 -14.06242 -14.00728 -13.65103 -13.58160 -13.30091 -13.10549 -13.04216 -12.78262 -12.62895 -12.53512 -12.31544 -12.17065 -12.06214 -11.89684 -11.82487 -11.53664 -11.30867 -10.94096 -10.52741 -10.15371 -10.13524 -10.07242 -9.81198 -8.96766 -8.19090 -6.17258 -0.34958 0.21075 0.70436 1.23355 1.24866 1.25117 1.35974 1.36953 2.36244 2.56395 3.13773 3.19740 3.21699 3.38223 3.57672 3.67978 3.76247 3.83742 4.05680 4.11417 4.18030 4.23466 4.29990 4.37269 4.41713 4.47047 4.52968 4.57269 4.59853 4.70843 4.71179 4.79143 4.82777 4.87634 4.89885 5.00112 5.05569 5.09303 5.13112 5.24100 5.26115 5.34145 5.38451 5.49468 5.51194 5.59312 5.80621 5.90409 6.37099 6.50435 6.57555 6.87582 7.38996 7.47987 8.98957 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016646 B = 0.003518 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.644123 B = 7956.775526 C = 8347.317634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.002 4.002 3 C -0.037 4.037 4 C 0.167 3.833 5 H 0.086 0.914 6 C -0.124 4.124 7 N -0.677 5.677 8 C 0.106 3.894 9 C -0.031 4.031 10 C -0.452 4.452 11 H 0.028 0.972 12 C 0.037 3.963 13 N -0.950 5.950 14 Si 0.937 3.063 15 H -0.272 1.272 16 H -0.323 1.323 17 H -0.242 1.242 18 C -0.156 4.156 19 C -0.211 4.211 20 N -0.281 5.281 21 N -0.125 5.125 22 N -0.245 5.245 23 C 0.082 3.918 24 C -0.115 4.115 25 C -0.102 4.102 26 C -0.097 4.097 27 C -0.096 4.096 28 C -0.114 4.114 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.031 0.969 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.327 0.673 36 H 0.077 0.923 37 H 0.035 0.965 38 H 0.256 0.744 39 H 0.112 0.888 40 H 0.076 0.924 41 H 0.101 0.899 42 H 0.065 0.935 43 H 0.118 0.882 44 H 0.159 0.841 45 H 0.169 0.831 46 H 0.170 0.830 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.221 -18.934 6.603 30.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.133 4.133 3 C -0.176 4.176 4 C 0.056 3.944 5 H 0.103 0.897 6 C -0.182 4.182 7 N -0.311 5.311 8 C -0.023 4.023 9 C -0.032 4.032 10 C -0.490 4.490 11 H 0.046 0.954 12 C -0.160 4.160 13 N -0.591 5.591 14 Si 0.767 3.233 15 H -0.199 1.199 16 H -0.252 1.252 17 H -0.166 1.166 18 C -0.193 4.193 19 C -0.248 4.248 20 N -0.146 5.146 21 N -0.102 5.102 22 N -0.033 5.033 23 C -0.007 4.007 24 C -0.135 4.135 25 C -0.121 4.121 26 C -0.115 4.115 27 C -0.114 4.114 28 C -0.135 4.135 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.127 0.873 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.147 0.853 36 H 0.095 0.905 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.131 0.869 40 H 0.094 0.906 41 H 0.120 0.880 42 H 0.084 0.916 43 H 0.136 0.864 44 H 0.177 0.823 45 H 0.186 0.814 46 H 0.188 0.812 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -21.173 -19.067 7.046 29.351 hybrid contribution -0.284 -0.404 -1.182 1.281 sum -21.457 -19.471 5.864 29.562 Atomic orbital electron populations 1.20688 0.81842 1.06264 1.05053 1.22827 0.98184 0.84765 1.07550 1.22256 0.88961 0.97972 1.08376 1.20019 0.95733 0.83332 0.95295 0.89695 1.21688 1.01165 1.01298 0.94095 1.60418 1.43476 1.08729 1.18483 1.21563 0.92457 0.91411 0.96867 1.19555 0.93514 0.98629 0.91487 1.20188 0.90015 1.10788 1.28014 0.95408 1.25474 0.94758 0.97696 0.98025 1.70026 1.10904 1.32909 1.45253 0.86083 0.79856 0.77126 0.80239 1.19864 1.25203 1.16585 1.22892 1.02073 0.90756 1.03612 1.23134 1.01558 1.04682 0.95398 1.75171 1.23038 1.00513 1.15876 1.78408 1.02483 1.06925 1.22370 1.44912 1.04864 1.06883 1.46690 1.18093 1.00392 0.79084 1.03125 1.21191 0.99774 0.94247 0.98330 1.21442 0.97325 0.93861 0.99431 1.21842 0.93980 1.01748 0.93902 1.21506 1.00536 0.90574 0.98824 1.21348 0.95670 0.98931 0.97504 0.88208 0.88633 0.87269 0.94947 0.90917 0.90666 0.85254 0.90484 0.94713 0.93514 0.86934 0.90552 0.88032 0.91617 0.86427 0.82293 0.81352 0.81210 0.84025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.26 8.50 71.24 0.61 -0.65 16 2 C 0.00 -0.05 6.82 41.23 0.28 0.23 16 3 C -0.04 -1.37 5.74 41.60 0.24 -1.13 16 4 C 0.17 5.76 2.95 44.17 0.13 5.89 16 5 H 0.09 2.26 6.82 -2.38 -0.02 2.24 16 6 C -0.12 -3.94 9.39 71.98 0.68 -3.26 16 7 N -0.68 -30.07 5.43 -495.46 -2.69 -32.76 16 8 C 0.11 4.17 5.67 86.30 0.49 4.66 16 9 C -0.03 -1.42 1.44 -52.90 -0.08 -1.49 16 10 C -0.45 -26.93 8.68 25.60 0.22 -26.71 16 11 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 12 C 0.04 2.30 5.21 84.65 0.44 2.74 16 13 N -0.95 -64.69 13.96 21.45 0.30 -64.39 16 14 Si 0.94 49.50 22.67 68.60 1.56 51.05 16 15 H -0.27 -13.63 6.87 99.48 0.68 -12.95 16 16 H -0.32 -18.16 7.11 99.48 0.71 -17.45 16 17 H -0.24 -11.42 5.88 99.48 0.59 -10.83 16 18 C -0.16 -5.97 9.95 30.60 0.30 -5.67 16 19 C -0.21 -8.63 7.14 30.62 0.22 -8.41 16 20 N -0.28 -13.02 12.39 -48.59 -0.60 -13.62 16 21 N -0.13 -5.24 12.94 37.02 0.48 -4.76 16 22 N -0.24 -7.83 3.47 -175.34 -0.61 -8.44 16 23 C 0.08 1.96 6.14 38.08 0.23 2.20 16 24 C -0.12 -2.43 9.78 22.38 0.22 -2.21 16 25 C -0.10 -1.29 10.04 22.25 0.22 -1.07 16 26 C -0.10 -0.81 10.04 22.29 0.22 -0.58 16 27 C -0.10 -0.91 10.04 22.25 0.22 -0.69 16 28 C -0.11 -1.85 8.61 22.38 0.19 -1.66 16 29 H 0.10 1.22 7.68 -2.39 -0.02 1.20 16 30 H 0.10 1.13 7.58 -2.39 -0.02 1.11 16 31 H 0.11 1.36 7.37 -2.39 -0.02 1.34 16 32 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 2.10 7.48 -2.39 -0.02 2.08 16 34 H 0.07 1.88 8.14 -2.38 -0.02 1.87 16 35 H 0.33 16.21 4.58 -89.69 -0.41 15.79 16 36 H 0.08 2.80 7.47 -2.39 -0.02 2.78 16 37 H 0.03 1.16 7.74 -2.39 -0.02 1.14 16 38 H 0.26 16.82 8.31 -92.71 -0.77 16.05 16 39 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 40 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 41 H 0.10 3.51 8.04 -2.39 -0.02 3.50 16 42 H 0.07 2.96 6.13 -2.38 -0.01 2.95 16 43 H 0.12 2.82 8.06 -2.91 -0.02 2.79 16 44 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 45 H 0.17 0.23 8.06 -2.91 -0.02 0.21 16 46 H 0.17 0.47 8.06 -2.91 -0.02 0.44 16 47 H 0.14 1.99 6.66 -2.91 -0.02 1.97 16 Total: -1.00 -87.57 375.57 3.70 -83.87 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: 0.42 Total: 26.89 kcal Atomic # 6 Polarization: -42.68 SS G_CDS: 4.85 Total: -37.83 kcal Atomic # 7 Polarization: -120.85 SS G_CDS: -3.12 Total: -123.98 kcal Atomic # 14 Polarization: 49.50 SS G_CDS: 1.56 Total: 51.05 kcal Total: -87.57 3.70 -83.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430749125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.631 kcal (2) G-P(sol) polarization free energy of solvation -87.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds