Wall clock time and date at job start Tue Mar 31 2020 15:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35372 * 126.97134 * 2 1 4 4 C 1.50708 * 126.73112 * 0.02562 * 3 2 1 5 5 H 1.08997 * 109.46971 * 14.99982 * 4 3 2 6 6 C 1.52998 * 109.46854 * 255.00043 * 4 3 2 7 7 N 1.46895 * 109.47043 * 134.99834 * 4 3 2 8 8 C 1.46894 * 111.00208 * 204.99611 * 7 4 3 9 9 C 1.52996 * 109.47395 * 174.69303 * 8 7 4 10 10 C 1.50695 * 115.54987 * 39.57625 * 9 8 7 11 11 H 1.08005 * 119.99869 * 265.26310 * 10 9 8 12 12 C 1.37876 * 120.00086 * 85.26657 * 10 9 8 13 13 N 1.31513 * 119.99921 * 353.33320 * 12 10 9 14 14 Si 1.86808 * 119.99879 * 173.34216 * 12 10 9 15 15 H 1.48500 * 109.47288 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47110 * 119.99938 * 14 12 10 17 17 H 1.48502 * 109.46738 * 239.99632 * 14 12 10 18 18 C 1.53006 * 117.49865 * 253.86918 * 9 8 7 19 19 C 1.53004 * 60.00054 * 252.50701 * 18 9 8 20 20 N 1.33769 * 106.53770 * 180.02562 * 3 2 1 21 21 N 1.28603 * 109.06108 * 359.97438 * 20 3 2 22 22 N 1.28736 * 110.23430 * 0.02562 * 21 20 3 23 23 C 1.40248 * 125.93938 * 179.97438 * 22 21 20 24 24 C 1.38821 * 120.06225 * 144.75223 * 23 22 21 25 25 C 1.38127 * 119.93158 * 179.72171 * 24 23 22 26 26 C 1.38279 * 120.06563 * 0.54528 * 25 24 23 27 27 C 1.38274 * 120.13039 * 359.72567 * 26 25 24 28 28 C 1.38124 * 120.06446 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.47072 * 270.02550 * 1 2 3 30 30 H 1.08995 * 109.47233 * 30.02724 * 1 2 3 31 31 H 1.09000 * 109.46557 * 150.02605 * 1 2 3 32 32 H 1.09002 * 109.47272 * 60.00076 * 6 4 3 33 33 H 1.08999 * 109.46956 * 179.97438 * 6 4 3 34 34 H 1.08998 * 109.46975 * 300.00201 * 6 4 3 35 35 H 1.00902 * 110.99768 * 81.04244 * 7 4 3 36 36 H 1.09001 * 109.47556 * 294.69717 * 8 7 4 37 37 H 1.08999 * 109.47122 * 54.69310 * 8 7 4 38 38 H 0.96997 * 119.99643 * 185.04840 * 13 12 10 39 39 H 1.08999 * 117.49599 * 359.97438 * 18 9 8 40 40 H 1.08995 * 117.49904 * 145.02289 * 18 9 8 41 41 H 1.08991 * 117.50312 * 252.51046 * 19 18 9 42 42 H 1.09004 * 117.51682 * 107.47480 * 19 18 9 43 43 H 1.07999 * 120.03415 * 359.97438 * 24 23 22 44 44 H 1.08004 * 119.96753 * 180.27217 * 25 24 23 45 45 H 1.07999 * 119.93356 * 179.74754 * 26 25 24 46 46 H 1.07997 * 119.96701 * 180.02562 * 27 26 25 47 47 H 1.07998 * 120.03202 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3212 1.0815 0.0000 4 6 1.8983 2.5281 0.0005 5 1 0.8437 2.5981 0.2669 6 6 2.1130 3.1226 -1.3927 7 7 2.7012 3.2726 0.9798 8 6 1.9856 4.4669 1.4481 9 6 2.7923 5.1417 2.5593 10 6 4.2851 5.1676 2.3549 11 1 4.9033 4.3967 2.7909 12 6 4.8617 6.1753 1.6113 13 7 4.1022 7.0380 0.9722 14 14 6.7219 6.3151 1.5115 15 1 7.3436 5.2314 2.3142 16 1 7.1522 6.1921 0.0955 17 1 7.1485 7.6333 2.0457 18 6 2.2775 4.9980 3.9930 19 6 2.1554 6.3394 3.2672 20 7 3.5747 0.6145 -0.0006 21 7 3.5439 -0.6711 -0.0004 22 7 2.3257 -1.0873 -0.0002 23 6 1.9138 -2.4280 -0.0005 24 6 0.7718 -2.8048 0.6930 25 6 0.3654 -4.1249 0.6862 26 6 1.1012 -5.0727 -0.0012 27 6 2.2422 -4.7013 -0.6882 28 6 2.6507 -3.3818 -0.6893 29 1 -0.3633 0.0005 1.0277 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3632 -0.8902 -0.5134 32 1 1.5172 2.5702 -2.1193 33 1 1.8067 4.1687 -1.3925 34 1 3.1676 3.0525 -1.6591 35 1 3.6021 3.5176 0.5972 36 1 1.8574 5.1623 0.6186 37 1 1.0081 4.1770 1.8335 38 1 4.5054 7.7015 0.3907 39 1 1.3639 4.4231 4.1444 40 1 3.0186 4.9221 4.7886 41 1 2.8161 7.1457 3.5852 42 1 1.1618 6.6468 2.9408 43 1 0.1994 -2.0658 1.2340 44 1 -0.5254 -4.4179 1.2220 45 1 0.7837 -6.1049 -0.0017 46 1 2.8146 -5.4436 -1.2245 47 1 3.5417 -3.0922 -1.2264 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430749126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:11 Heat of formation + Delta-G solvation = 152.932640 kcal Electronic energy + Delta-G solvation = -27274.115318 eV Core-core repulsion = 23652.924007 eV Total energy + Delta-G solvation = -3621.191312 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.30068 -39.58304 -37.22764 -35.61899 -34.50420 -32.76270 -31.82516 -31.34568 -30.12579 -29.17196 -27.30932 -25.48946 -24.52536 -24.18673 -23.40450 -22.40309 -20.94843 -20.83070 -20.06288 -18.98130 -17.90239 -16.73564 -16.55036 -16.01086 -15.29402 -15.01651 -14.59690 -14.49724 -14.33569 -14.03215 -13.87633 -13.73827 -13.57526 -13.31345 -13.19512 -12.87949 -12.52542 -12.27638 -12.02863 -11.88155 -11.68058 -11.46135 -11.36795 -11.16376 -10.89829 -10.76631 -10.74284 -10.73046 -10.36438 -10.33663 -10.04522 -9.48989 -9.35736 -8.95610 -8.75320 -8.70602 -8.36112 -7.98150 -7.28521 -5.93591 -3.96864 0.46862 0.84658 1.83017 2.27393 2.79309 3.25112 3.36375 3.44992 3.51876 4.26371 4.37657 4.44790 4.50459 4.62910 4.73313 4.78086 4.86903 4.97698 5.06499 5.19758 5.29428 5.34095 5.38858 5.48062 5.57350 5.60070 5.63136 5.67169 5.75829 5.82796 5.97708 6.00212 6.12756 6.19972 6.27072 6.28218 6.36966 6.48307 6.57498 6.66799 6.83656 6.87000 6.88494 7.03916 7.20782 7.51402 7.59436 7.99755 8.15690 8.50480 8.63797 8.71202 9.06797 9.67486 11.14478 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.018467 B = 0.002856 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.858801 B = 9801.781621 C =10358.767581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.025 4.025 3 C 0.023 3.977 4 C 0.165 3.835 5 H 0.084 0.916 6 C -0.175 4.175 7 N -0.662 5.662 8 C 0.108 3.892 9 C 0.053 3.947 10 C -0.480 4.480 11 H 0.062 0.938 12 C 0.069 3.931 13 N -0.883 5.883 14 Si 0.885 3.115 15 H -0.271 1.271 16 H -0.285 1.285 17 H -0.286 1.286 18 C -0.208 4.208 19 C -0.163 4.163 20 N -0.232 5.232 21 N -0.089 5.089 22 N -0.255 5.255 23 C 0.131 3.869 24 C -0.116 4.116 25 C -0.103 4.103 26 C -0.114 4.114 27 C -0.104 4.104 28 C -0.100 4.100 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.363 0.637 36 H 0.031 0.969 37 H 0.036 0.964 38 H 0.257 0.743 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.131 0.869 46 H 0.135 0.865 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.995 -21.527 -5.374 25.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.154 4.154 3 C -0.114 4.114 4 C 0.052 3.948 5 H 0.102 0.898 6 C -0.235 4.235 7 N -0.295 5.295 8 C -0.021 4.021 9 C 0.052 3.948 10 C -0.518 4.518 11 H 0.080 0.920 12 C -0.133 4.133 13 N -0.521 5.521 14 Si 0.713 3.287 15 H -0.196 1.196 16 H -0.211 1.211 17 H -0.213 1.213 18 C -0.245 4.245 19 C -0.201 4.201 20 N -0.098 5.098 21 N -0.066 5.066 22 N -0.044 5.044 23 C 0.040 3.960 24 C -0.137 4.137 25 C -0.121 4.121 26 C -0.132 4.132 27 C -0.122 4.122 28 C -0.120 4.120 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.185 0.815 36 H 0.049 0.951 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.155 0.845 44 H 0.153 0.847 45 H 0.149 0.851 46 H 0.153 0.847 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.626 -22.039 -4.904 24.954 hybrid contribution 0.080 0.967 -0.832 1.278 sum -10.547 -21.071 -5.736 24.252 Atomic orbital electron populations 1.20427 0.86175 1.03962 1.03371 1.22016 0.96063 0.86038 1.11306 1.21860 0.88759 0.96635 1.04159 1.19742 0.97636 0.85623 0.91800 0.89782 1.22470 1.02623 1.01319 0.97042 1.60362 1.06448 1.24960 1.37713 1.21404 0.94032 0.89197 0.97444 1.18762 0.94283 0.94818 0.86892 1.20461 0.89606 1.08977 1.32760 0.91964 1.24973 0.97472 0.95196 0.95702 1.70003 1.34475 1.19019 1.28590 0.86641 0.86444 0.77837 0.77800 1.19584 1.21127 1.21273 1.22985 1.01028 1.01469 0.99059 1.22522 0.99567 0.91816 1.06191 1.75077 1.20947 0.99454 1.14367 1.78429 1.00324 1.07449 1.20376 1.44544 1.05774 1.05142 1.48907 1.17617 0.97065 0.80313 1.01007 1.21183 0.96037 0.97645 0.98797 1.21061 1.00152 0.91789 0.99136 1.21338 0.95031 1.00001 0.96873 1.21108 0.96793 0.95162 0.99153 1.21093 0.99998 0.92536 0.98338 0.90032 0.89237 0.90995 0.93209 0.91482 0.91900 0.81515 0.95120 0.94556 0.93326 0.92000 0.90838 0.90298 0.92237 0.84532 0.84690 0.85133 0.84743 0.84477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 8.26 36.01 0.30 -0.46 16 2 C -0.03 -0.36 6.83 -81.72 -0.56 -0.92 16 3 C 0.02 0.40 6.08 -82.77 -0.50 -0.10 16 4 C 0.17 2.83 2.94 -68.86 -0.20 2.63 16 5 H 0.08 1.27 6.89 -51.93 -0.36 0.92 16 6 C -0.18 -2.82 9.15 37.16 0.34 -2.48 16 7 N -0.66 -14.02 5.99 -107.96 -0.65 -14.66 16 8 C 0.11 2.39 5.63 -3.83 -0.02 2.37 16 9 C 0.05 1.32 1.76 -155.66 -0.27 1.04 16 10 C -0.48 -13.12 7.47 -34.44 -0.26 -13.38 16 11 H 0.06 1.78 7.82 -52.48 -0.41 1.37 16 12 C 0.07 1.89 5.39 -17.82 -0.10 1.79 16 13 N -0.88 -24.79 12.93 55.43 0.72 -24.07 16 14 Si 0.88 21.65 29.55 -169.99 -5.02 16.63 16 15 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 18 C -0.21 -4.73 9.88 -26.73 -0.26 -4.99 16 19 C -0.16 -3.89 9.46 -26.73 -0.25 -4.14 16 20 N -0.23 -4.60 12.39 33.29 0.41 -4.18 16 21 N -0.09 -1.60 12.85 60.35 0.78 -0.83 16 22 N -0.25 -3.77 3.50 -6.77 -0.02 -3.80 16 23 C 0.13 1.51 6.27 -83.57 -0.52 0.99 16 24 C -0.12 -1.03 8.34 -39.41 -0.33 -1.36 16 25 C -0.10 -0.67 10.04 -39.61 -0.40 -1.07 16 26 C -0.11 -0.69 10.04 -39.55 -0.40 -1.09 16 27 C -0.10 -0.74 10.04 -39.61 -0.40 -1.13 16 28 C -0.10 -1.00 9.71 -39.41 -0.38 -1.38 16 29 H 0.08 0.67 7.80 -51.93 -0.41 0.27 16 30 H 0.09 0.76 7.59 -51.93 -0.39 0.36 16 31 H 0.07 0.55 7.00 -51.93 -0.36 0.19 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 1.11 7.56 -51.93 -0.39 0.72 16 34 H 0.06 1.10 8.13 -51.93 -0.42 0.68 16 35 H 0.36 8.57 7.45 -39.29 -0.29 8.28 16 36 H 0.03 0.72 7.57 -51.93 -0.39 0.33 16 37 H 0.04 0.73 7.73 -51.93 -0.40 0.33 16 38 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 39 H 0.06 1.28 8.08 -51.93 -0.42 0.86 16 40 H 0.07 1.68 8.14 -51.93 -0.42 1.26 16 41 H 0.08 2.02 8.14 -51.93 -0.42 1.59 16 42 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.14 1.09 6.19 -52.49 -0.33 0.77 16 44 H 0.14 0.53 8.06 -52.48 -0.42 0.11 16 45 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 46 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 47 H 0.14 1.41 8.03 -52.49 -0.42 0.99 16 LS Contribution 388.73 15.07 5.86 5.86 Total: -1.00 -31.91 388.73 -9.25 -41.15 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -7.09 Total: 7.59 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: -4.22 Total: -23.69 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: 1.23 Total: -47.55 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.91 -9.25 -41.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430749126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.086 kcal (2) G-P(sol) polarization free energy of solvation -31.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds