Wall clock time and date at job start Tue Mar 31 2020 15:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35372 * 126.97134 * 2 1 4 4 C 1.50708 * 126.73112 * 0.02562 * 3 2 1 5 5 H 1.08997 * 109.46971 * 14.99982 * 4 3 2 6 6 C 1.52998 * 109.46854 * 255.00043 * 4 3 2 7 7 N 1.46895 * 109.47043 * 134.99834 * 4 3 2 8 8 C 1.46894 * 111.00208 * 204.99611 * 7 4 3 9 9 C 1.52996 * 109.47395 * 174.69303 * 8 7 4 10 10 C 1.50695 * 115.54987 * 39.57625 * 9 8 7 11 11 H 1.08005 * 119.99869 * 265.26310 * 10 9 8 12 12 C 1.37876 * 120.00086 * 85.26657 * 10 9 8 13 13 N 1.31513 * 119.99921 * 353.33320 * 12 10 9 14 14 Si 1.86808 * 119.99879 * 173.34216 * 12 10 9 15 15 H 1.48500 * 109.47288 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47110 * 119.99938 * 14 12 10 17 17 H 1.48502 * 109.46738 * 239.99632 * 14 12 10 18 18 C 1.53006 * 117.49865 * 253.86918 * 9 8 7 19 19 C 1.53004 * 60.00054 * 252.50701 * 18 9 8 20 20 N 1.33769 * 106.53770 * 180.02562 * 3 2 1 21 21 N 1.28603 * 109.06108 * 359.97438 * 20 3 2 22 22 N 1.28736 * 110.23430 * 0.02562 * 21 20 3 23 23 C 1.40248 * 125.93938 * 179.97438 * 22 21 20 24 24 C 1.38821 * 120.06225 * 144.75223 * 23 22 21 25 25 C 1.38127 * 119.93158 * 179.72171 * 24 23 22 26 26 C 1.38279 * 120.06563 * 0.54528 * 25 24 23 27 27 C 1.38274 * 120.13039 * 359.72567 * 26 25 24 28 28 C 1.38124 * 120.06446 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.47072 * 270.02550 * 1 2 3 30 30 H 1.08995 * 109.47233 * 30.02724 * 1 2 3 31 31 H 1.09000 * 109.46557 * 150.02605 * 1 2 3 32 32 H 1.09002 * 109.47272 * 60.00076 * 6 4 3 33 33 H 1.08999 * 109.46956 * 179.97438 * 6 4 3 34 34 H 1.08998 * 109.46975 * 300.00201 * 6 4 3 35 35 H 1.00902 * 110.99768 * 81.04244 * 7 4 3 36 36 H 1.09001 * 109.47556 * 294.69717 * 8 7 4 37 37 H 1.08999 * 109.47122 * 54.69310 * 8 7 4 38 38 H 0.96997 * 119.99643 * 185.04840 * 13 12 10 39 39 H 1.08999 * 117.49599 * 359.97438 * 18 9 8 40 40 H 1.08995 * 117.49904 * 145.02289 * 18 9 8 41 41 H 1.08991 * 117.50312 * 252.51046 * 19 18 9 42 42 H 1.09004 * 117.51682 * 107.47480 * 19 18 9 43 43 H 1.07999 * 120.03415 * 359.97438 * 24 23 22 44 44 H 1.08004 * 119.96753 * 180.27217 * 25 24 23 45 45 H 1.07999 * 119.93356 * 179.74754 * 26 25 24 46 46 H 1.07997 * 119.96701 * 180.02562 * 27 26 25 47 47 H 1.07998 * 120.03202 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3212 1.0815 0.0000 4 6 1.8983 2.5281 0.0005 5 1 0.8437 2.5981 0.2669 6 6 2.1130 3.1226 -1.3927 7 7 2.7012 3.2726 0.9798 8 6 1.9856 4.4669 1.4481 9 6 2.7923 5.1417 2.5593 10 6 4.2851 5.1676 2.3549 11 1 4.9033 4.3967 2.7909 12 6 4.8617 6.1753 1.6113 13 7 4.1022 7.0380 0.9722 14 14 6.7219 6.3151 1.5115 15 1 7.3436 5.2314 2.3142 16 1 7.1522 6.1921 0.0955 17 1 7.1485 7.6333 2.0457 18 6 2.2775 4.9980 3.9930 19 6 2.1554 6.3394 3.2672 20 7 3.5747 0.6145 -0.0006 21 7 3.5439 -0.6711 -0.0004 22 7 2.3257 -1.0873 -0.0002 23 6 1.9138 -2.4280 -0.0005 24 6 0.7718 -2.8048 0.6930 25 6 0.3654 -4.1249 0.6862 26 6 1.1012 -5.0727 -0.0012 27 6 2.2422 -4.7013 -0.6882 28 6 2.6507 -3.3818 -0.6893 29 1 -0.3633 0.0005 1.0277 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3632 -0.8902 -0.5134 32 1 1.5172 2.5702 -2.1193 33 1 1.8067 4.1687 -1.3925 34 1 3.1676 3.0525 -1.6591 35 1 3.6021 3.5176 0.5972 36 1 1.8574 5.1623 0.6186 37 1 1.0081 4.1770 1.8335 38 1 4.5054 7.7015 0.3907 39 1 1.3639 4.4231 4.1444 40 1 3.0186 4.9221 4.7886 41 1 2.8161 7.1457 3.5852 42 1 1.1618 6.6468 2.9408 43 1 0.1994 -2.0658 1.2340 44 1 -0.5254 -4.4179 1.2220 45 1 0.7837 -6.1049 -0.0017 46 1 2.8146 -5.4436 -1.2245 47 1 3.5417 -3.0922 -1.2264 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430749126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:10 Heat of formation + Delta-G solvation = 134.066280 kcal Electronic energy + Delta-G solvation = -27274.933425 eV Core-core repulsion = 23652.924007 eV Total energy + Delta-G solvation = -3622.009419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.44839 -40.25002 -38.93439 -37.14587 -35.52075 -33.94963 -33.84038 -32.01583 -31.11207 -30.38601 -28.32478 -27.53655 -26.10098 -25.18144 -24.33435 -23.36265 -22.81659 -21.79353 -21.28517 -20.85008 -18.84981 -17.93878 -17.64795 -17.32352 -16.66936 -16.48138 -15.90041 -15.60095 -15.56137 -15.51653 -15.05260 -14.89260 -14.57916 -14.40186 -14.11647 -13.92969 -13.72508 -13.51401 -13.42133 -13.12102 -12.99530 -12.89184 -12.74143 -12.71311 -12.54099 -12.30483 -12.21624 -12.06763 -11.93956 -11.85877 -11.47019 -11.24901 -10.73262 -10.38335 -10.08231 -10.01110 -9.83644 -9.68286 -8.94251 -8.05533 -6.12306 -0.29494 0.26687 0.85777 1.33422 1.37568 1.41851 1.51164 1.52454 2.45283 2.63960 3.21760 3.32586 3.38128 3.62548 3.71922 3.79858 3.83975 3.95823 4.10843 4.17054 4.27158 4.31712 4.35615 4.43211 4.51442 4.60236 4.63217 4.65412 4.73106 4.80384 4.84252 4.89937 4.94128 4.97310 5.03583 5.07691 5.10448 5.20959 5.28495 5.31300 5.33040 5.36239 5.44484 5.66608 5.68492 5.70012 5.83728 5.97994 6.45270 6.63228 6.72437 6.93569 7.49611 7.53389 9.01681 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.018467 B = 0.002856 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.858801 B = 9801.781621 C =10358.767581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.008 4.008 3 C -0.006 4.006 4 C 0.169 3.831 5 H 0.111 0.889 6 C -0.165 4.165 7 N -0.672 5.672 8 C 0.122 3.878 9 C 0.024 3.976 10 C -0.488 4.488 11 H 0.040 0.960 12 C 0.033 3.967 13 N -0.903 5.903 14 Si 0.935 3.065 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.190 4.190 19 C -0.162 4.162 20 N -0.282 5.282 21 N -0.125 5.125 22 N -0.245 5.245 23 C 0.087 3.913 24 C -0.118 4.118 25 C -0.097 4.097 26 C -0.101 4.101 27 C -0.103 4.103 28 C -0.118 4.118 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.037 0.963 35 H 0.342 0.658 36 H 0.011 0.989 37 H 0.061 0.939 38 H 0.257 0.743 39 H 0.090 0.910 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.077 0.923 43 H 0.146 0.854 44 H 0.169 0.831 45 H 0.167 0.833 46 H 0.158 0.842 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.142 -24.348 -5.176 29.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.139 4.139 3 C -0.145 4.145 4 C 0.057 3.943 5 H 0.128 0.872 6 C -0.225 4.225 7 N -0.303 5.303 8 C -0.007 4.007 9 C 0.024 3.976 10 C -0.526 4.526 11 H 0.058 0.942 12 C -0.167 4.167 13 N -0.541 5.541 14 Si 0.762 3.238 15 H -0.201 1.201 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.227 4.227 19 C -0.200 4.200 20 N -0.148 5.148 21 N -0.101 5.101 22 N -0.033 5.033 23 C -0.003 4.003 24 C -0.138 4.138 25 C -0.115 4.115 26 C -0.119 4.119 27 C -0.121 4.121 28 C -0.138 4.138 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.111 0.889 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.162 0.838 36 H 0.029 0.971 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.108 0.892 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.163 0.837 44 H 0.187 0.813 45 H 0.184 0.816 46 H 0.176 0.824 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.767 -24.895 -4.703 28.834 hybrid contribution 0.984 1.618 -0.874 2.086 sum -12.782 -23.277 -5.578 27.135 Atomic orbital electron populations 1.20684 0.82434 1.05740 1.05082 1.22673 0.97979 0.84895 1.08353 1.21968 0.88796 0.97324 1.06429 1.19825 0.98178 0.85167 0.91152 0.87163 1.22349 1.01452 1.01183 0.97491 1.60326 1.06028 1.24470 1.39456 1.21210 0.94567 0.89035 0.95864 1.18951 0.93423 0.96264 0.88998 1.20536 0.91274 1.08320 1.32468 0.94208 1.25459 1.00510 0.95133 0.95647 1.70067 1.35527 1.19438 1.29116 0.85866 0.82800 0.77515 0.77631 1.20146 1.20835 1.20800 1.22983 1.01660 1.00596 0.97485 1.22426 0.99783 0.91358 1.06474 1.74991 1.22976 1.00541 1.16248 1.78313 1.02316 1.06948 1.22512 1.44802 1.04972 1.06663 1.46904 1.18091 0.99155 0.79056 1.03978 1.21398 0.94970 0.99127 0.98300 1.21503 1.00920 0.90579 0.98474 1.21818 0.93663 1.01673 0.94731 1.21426 0.97461 0.94125 0.99118 1.21163 0.99773 0.93883 0.98985 0.88115 0.87821 0.88857 0.90443 0.92200 0.94411 0.83810 0.97109 0.92097 0.93346 0.89177 0.91580 0.92757 0.90457 0.83670 0.81319 0.81586 0.82448 0.86270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 8.26 71.24 0.59 -0.69 16 2 C -0.01 -0.23 6.83 41.24 0.28 0.05 16 3 C -0.01 -0.22 6.08 41.60 0.25 0.03 16 4 C 0.17 5.76 2.94 44.17 0.13 5.89 16 5 H 0.11 3.11 6.89 -2.39 -0.02 3.09 16 6 C -0.17 -5.39 9.15 71.98 0.66 -4.73 16 7 N -0.67 -29.01 5.99 -495.47 -2.97 -31.98 16 8 C 0.12 5.38 5.63 86.30 0.49 5.87 16 9 C 0.02 1.21 1.76 -52.93 -0.09 1.12 16 10 C -0.49 -27.44 7.47 25.60 0.19 -27.25 16 11 H 0.04 2.36 7.82 -2.91 -0.02 2.34 16 12 C 0.03 1.83 5.39 84.65 0.46 2.28 16 13 N -0.90 -51.68 12.93 21.45 0.28 -51.40 16 14 Si 0.93 45.73 29.55 68.60 2.03 47.76 16 15 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 16 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 17 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 18 C -0.19 -8.45 9.88 30.60 0.30 -8.15 16 19 C -0.16 -7.70 9.46 30.60 0.29 -7.41 16 20 N -0.28 -11.81 12.39 -48.58 -0.60 -12.41 16 21 N -0.12 -4.74 12.85 37.02 0.48 -4.27 16 22 N -0.24 -7.32 3.50 -175.34 -0.61 -7.93 16 23 C 0.09 1.94 6.27 38.07 0.24 2.18 16 24 C -0.12 -1.77 8.34 22.38 0.19 -1.58 16 25 C -0.10 -0.84 10.04 22.25 0.22 -0.62 16 26 C -0.10 -0.78 10.04 22.29 0.22 -0.56 16 27 C -0.10 -1.21 10.04 22.25 0.22 -0.99 16 28 C -0.12 -2.33 9.71 22.38 0.22 -2.11 16 29 H 0.10 1.26 7.80 -2.39 -0.02 1.25 16 30 H 0.10 1.37 7.59 -2.39 -0.02 1.35 16 31 H 0.09 1.09 7.00 -2.39 -0.02 1.08 16 32 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.06 2.00 7.56 -2.39 -0.02 1.98 16 34 H 0.04 1.39 8.13 -2.39 -0.02 1.37 16 35 H 0.34 17.03 7.45 -89.69 -0.67 16.37 16 36 H 0.01 0.51 7.57 -2.39 -0.02 0.49 16 37 H 0.06 2.34 7.73 -2.39 -0.02 2.33 16 38 H 0.26 14.18 8.32 -92.71 -0.77 13.41 16 39 H 0.09 3.48 8.08 -2.39 -0.02 3.46 16 40 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 41 H 0.05 2.81 8.14 -2.39 -0.02 2.79 16 42 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 43 H 0.15 1.85 6.19 -2.91 -0.02 1.83 16 44 H 0.17 0.36 8.06 -2.91 -0.02 0.34 16 45 H 0.17 0.17 8.06 -2.91 -0.02 0.14 16 46 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 47 H 0.12 2.67 8.03 -2.91 -0.02 2.64 16 Total: -1.00 -73.68 388.73 3.76 -69.92 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 0.31 Total: 26.96 kcal Atomic # 6 Polarization: -41.51 SS G_CDS: 4.86 Total: -36.66 kcal Atomic # 7 Polarization: -104.55 SS G_CDS: -3.43 Total: -107.98 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -73.68 3.76 -69.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430749126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.988 kcal (2) G-P(sol) polarization free energy of solvation -73.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds