Wall clock time and date at job start Tue Mar 31 2020 14:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35734 * 116.99783 * 2 1 4 4 C 1.39289 * 120.85007 * 359.97438 * 3 2 1 5 5 C 1.37946 * 119.09847 * 180.02562 * 4 3 2 6 6 N 1.31984 * 120.81831 * 359.97438 * 5 4 3 7 7 C 1.31948 * 121.86363 * 359.73022 * 6 5 4 8 8 C 1.37981 * 120.82149 * 0.53687 * 7 6 5 9 9 C 1.50704 * 120.45433 * 179.75274 * 8 7 6 10 10 N 1.46904 * 109.46978 * 259.72164 * 9 8 7 11 11 C 1.46901 * 110.99885 * 179.97438 * 10 9 8 12 12 H 1.09003 * 109.46917 * 34.99555 * 11 10 9 13 13 C 1.53000 * 109.47114 * 155.00130 * 11 10 9 14 14 C 1.53000 * 109.46745 * 294.99733 * 13 11 10 15 15 C 1.50707 * 109.46905 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99455 * 359.97438 * 15 14 13 17 17 C 1.37870 * 119.99905 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00297 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99808 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47118 * 90.00104 * 19 17 15 21 21 H 1.48501 * 109.47097 * 209.99931 * 19 17 15 22 22 H 1.48498 * 109.47048 * 329.99786 * 19 17 15 23 23 C 1.50703 * 109.47187 * 275.00428 * 11 10 9 24 24 C 1.38235 * 120.00292 * 139.99945 * 23 11 10 25 25 C 1.38230 * 119.99899 * 179.97438 * 24 23 11 26 26 C 1.38235 * 120.00326 * 359.95697 * 25 24 23 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99503 * 319.97237 * 23 11 10 29 29 H 1.09005 * 109.47211 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47029 * 300.00005 * 1 2 3 31 31 H 1.08998 * 109.47565 * 60.00103 * 1 2 3 32 32 H 1.08004 * 120.45226 * 359.97438 * 4 3 2 33 33 H 1.07994 * 119.59014 * 179.97438 * 5 4 3 34 34 H 1.08000 * 119.58706 * 180.28976 * 7 6 5 35 35 H 1.09003 * 109.47289 * 139.71982 * 9 8 7 36 36 H 1.08998 * 109.47108 * 19.72277 * 9 8 7 37 37 H 1.00894 * 110.99828 * 303.95066 * 10 9 8 38 38 H 1.08995 * 109.46916 * 54.99821 * 13 11 10 39 39 H 1.09003 * 109.46852 * 175.00189 * 13 11 10 40 40 H 1.08995 * 109.47486 * 299.99739 * 14 13 11 41 41 H 1.09003 * 109.47073 * 60.00592 * 14 13 11 42 42 H 0.97001 * 120.00122 * 180.02562 * 18 17 15 43 43 H 1.08001 * 119.99730 * 359.97438 * 24 23 11 44 44 H 1.08000 * 120.00376 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.00616 * 179.72578 * 26 25 24 46 46 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.00455 * 0.02562 * 28 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3040 2.3887 -0.0005 5 6 1.9674 3.5981 -0.0011 6 7 3.2864 3.6458 -0.0005 7 6 4.0230 2.5510 0.0058 8 6 3.4345 1.3030 0.0010 9 6 4.2838 0.0580 0.0027 10 7 4.3617 -0.4834 -1.3607 11 6 5.1841 -1.7000 -1.3978 12 1 5.0413 -2.2634 -0.4757 13 6 4.7671 -2.5613 -2.5916 14 6 3.3310 -3.0495 -2.3912 15 6 2.9204 -3.8985 -3.5668 16 1 3.6143 -4.0719 -4.3761 17 6 1.6587 -4.4527 -3.6097 18 7 0.8133 -4.2401 -2.6250 19 14 1.1495 -5.5043 -5.0672 20 1 1.4933 -6.9235 -4.7977 21 1 -0.3152 -5.3814 -5.2787 22 1 1.8656 -5.0439 -6.2840 23 6 6.6362 -1.3208 -1.5348 24 6 7.6010 -2.0123 -0.8264 25 6 8.9329 -1.6648 -0.9525 26 6 9.3003 -0.6263 -1.7877 27 6 8.3356 0.0643 -2.4972 28 6 7.0033 -0.2817 -2.3693 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 0.2244 2.3567 -0.0014 33 1 1.4006 4.5173 -0.0019 34 1 5.0999 2.6329 0.0107 35 1 3.8380 -0.6851 0.6638 36 1 5.2861 0.3024 0.3543 37 1 3.4405 -0.6578 -1.7337 38 1 4.8255 -1.9692 -3.5048 39 1 5.4347 -3.4193 -2.6715 40 1 3.2726 -3.6417 -1.4780 41 1 2.6634 -2.1916 -2.3114 42 1 -0.0742 -4.6304 -2.6550 43 1 7.3141 -2.8242 -0.1745 44 1 9.6867 -2.2047 -0.3988 45 1 10.3405 -0.3518 -1.8828 46 1 8.6224 0.8760 -3.1493 47 1 6.2496 0.2586 -2.9228 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000433015789.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:18 Heat of formation + Delta-G solvation = 12.305088 kcal Electronic energy + Delta-G solvation = -27477.021008 eV Core-core repulsion = 23817.438876 eV Total energy + Delta-G solvation = -3659.582131 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.65035 -39.19131 -38.09612 -36.57399 -33.75851 -32.61824 -31.17272 -30.63261 -30.28562 -30.15433 -27.52202 -26.57408 -24.76117 -23.43673 -22.83328 -22.27047 -21.64724 -20.90680 -19.55056 -18.26448 -17.08219 -16.69340 -16.29014 -15.83270 -15.49619 -15.22515 -14.97136 -14.88090 -14.48024 -14.42400 -14.13494 -13.89946 -13.55419 -13.40397 -13.05586 -12.80999 -12.63833 -12.38358 -12.33961 -12.09478 -11.80709 -11.54261 -11.49861 -11.06012 -10.96307 -10.91669 -10.72744 -10.56016 -10.46834 -9.79470 -9.51493 -9.37880 -9.14908 -9.13868 -8.71281 -8.62640 -8.37639 -8.29275 -8.01401 -6.02916 -4.04342 1.10594 1.39566 1.65296 1.71424 3.22367 3.29659 3.35982 3.40119 3.80191 4.09109 4.43246 4.44295 4.65475 4.73018 4.81679 5.04133 5.14445 5.15838 5.21736 5.23873 5.27213 5.33307 5.36724 5.44776 5.49670 5.67530 5.70031 5.79623 5.82114 5.89893 5.91949 6.00172 6.05564 6.18356 6.25784 6.35502 6.50159 6.59951 6.69786 6.77722 6.86159 6.96264 7.04144 7.26235 7.31000 7.47816 7.61279 7.77586 7.87954 7.97468 8.03455 8.40186 9.01952 9.59561 11.07937 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.006768 B = 0.005151 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4135.995995 B = 5434.124231 C = 8948.565525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.297 6.297 3 C 0.177 3.823 4 C -0.265 4.265 5 C 0.129 3.871 6 N -0.513 5.513 7 C 0.146 3.854 8 C -0.159 4.159 9 C 0.113 3.887 10 N -0.677 5.677 11 C 0.124 3.876 12 H 0.049 0.951 13 C -0.108 4.108 14 C 0.023 3.977 15 C -0.517 4.517 16 H 0.055 0.945 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.060 4.060 24 C -0.122 4.122 25 C -0.126 4.126 26 C -0.133 4.133 27 C -0.129 4.129 28 C -0.087 4.087 29 H 0.110 0.890 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.137 0.863 33 H 0.153 0.847 34 H 0.159 0.841 35 H 0.043 0.957 36 H 0.076 0.924 37 H 0.358 0.642 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.013 0.987 41 H 0.018 0.982 42 H 0.259 0.741 43 H 0.117 0.883 44 H 0.114 0.886 45 H 0.113 0.887 46 H 0.115 0.885 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.023 12.202 7.482 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.207 6.207 3 C 0.122 3.878 4 C -0.286 4.286 5 C -0.028 4.028 6 N -0.226 5.226 7 C -0.010 4.010 8 C -0.163 4.163 9 C -0.017 4.017 10 N -0.311 5.311 11 C 0.014 3.986 12 H 0.067 0.933 13 C -0.146 4.146 14 C -0.014 4.014 15 C -0.555 4.555 16 H 0.073 0.927 17 C -0.142 4.142 18 N -0.534 5.534 19 Si 0.717 3.283 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.061 4.061 24 C -0.140 4.140 25 C -0.144 4.144 26 C -0.151 4.151 27 C -0.147 4.147 28 C -0.105 4.105 29 H 0.128 0.872 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.154 0.846 33 H 0.171 0.829 34 H 0.177 0.823 35 H 0.061 0.939 36 H 0.095 0.905 37 H 0.181 0.819 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.031 0.969 41 H 0.036 0.964 42 H 0.068 0.932 43 H 0.135 0.865 44 H 0.132 0.868 45 H 0.131 0.869 46 H 0.133 0.867 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.801 13.130 7.340 16.508 hybrid contribution -1.745 -1.998 -0.385 2.681 sum 5.056 11.132 6.955 14.066 Atomic orbital electron populations 1.23159 0.77435 1.05125 1.00856 1.86193 1.22115 1.25475 1.86880 1.19339 0.92131 0.85045 0.91299 1.22197 1.01488 0.93260 1.11666 1.22473 0.90392 0.96771 0.93179 1.67727 1.07021 1.32130 1.15675 1.22502 1.00090 0.86079 0.92320 1.20290 0.90892 0.97650 1.07425 1.20599 0.97751 0.92062 0.91278 1.60592 1.20553 1.30541 1.19451 1.20575 0.88628 0.89679 0.99670 0.93306 1.21826 1.00212 0.97264 0.95260 1.19119 0.89338 0.95900 0.97027 1.21222 0.98506 1.30433 1.05381 0.92718 1.24981 0.96679 0.96531 0.96047 1.69962 1.06681 1.45032 1.31699 0.86637 0.77615 0.80817 0.83200 1.20716 1.21296 1.19871 1.20055 0.95259 0.95130 0.95642 1.21052 0.92892 0.99971 1.00094 1.21000 0.95879 0.97998 0.99570 1.21030 0.98927 0.97048 0.98112 1.21153 0.93417 1.00110 1.00006 1.21057 0.95431 0.96464 0.97580 0.87171 0.92934 0.92357 0.84551 0.82926 0.82340 0.93906 0.90514 0.81945 0.92299 0.92552 0.96879 0.96393 0.93183 0.86541 0.86758 0.86919 0.86701 0.85320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.84 101.05 0.99 1.35 16 2 O -0.30 -4.63 9.86 -18.91 -0.19 -4.82 16 3 C 0.18 2.55 6.70 -38.82 -0.26 2.29 16 4 C -0.27 -3.22 9.11 -39.30 -0.36 -3.58 16 5 C 0.13 1.52 11.17 -17.59 -0.20 1.33 16 6 N -0.51 -6.98 10.36 -13.33 -0.14 -7.12 16 7 C 0.15 1.95 10.82 -17.60 -0.19 1.76 16 8 C -0.16 -2.28 5.42 -104.34 -0.57 -2.84 16 9 C 0.11 1.66 5.33 -4.97 -0.03 1.64 16 10 N -0.68 -11.22 5.54 -109.21 -0.60 -11.83 16 11 C 0.12 2.13 2.25 -68.86 -0.15 1.98 16 12 H 0.05 0.87 7.66 -51.93 -0.40 0.47 16 13 C -0.11 -2.20 4.72 -26.73 -0.13 -2.33 16 14 C 0.02 0.58 4.80 -27.88 -0.13 0.45 16 15 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 16 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -25.90 13.29 55.43 0.74 -25.17 16 19 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.06 -0.93 4.71 -104.62 -0.49 -1.42 16 24 C -0.12 -1.73 9.67 -39.59 -0.38 -2.11 16 25 C -0.13 -1.60 10.05 -39.59 -0.40 -2.00 16 26 C -0.13 -1.63 10.05 -39.58 -0.40 -2.03 16 27 C -0.13 -1.67 10.05 -39.58 -0.40 -2.07 16 28 C -0.09 -1.29 9.32 -39.58 -0.37 -1.66 16 29 H 0.11 1.39 8.14 -51.93 -0.42 0.96 16 30 H 0.05 0.50 7.71 -51.93 -0.40 0.10 16 31 H 0.06 0.65 7.71 -51.93 -0.40 0.25 16 32 H 0.14 1.33 6.47 -52.48 -0.34 0.99 16 33 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.16 1.81 8.04 -52.49 -0.42 1.39 16 35 H 0.04 0.68 7.84 -51.93 -0.41 0.27 16 36 H 0.08 1.04 7.87 -51.93 -0.41 0.63 16 37 H 0.36 6.81 6.46 -39.30 -0.25 6.55 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.02 0.47 6.43 -51.93 -0.33 0.13 16 42 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.12 1.55 8.04 -52.49 -0.42 1.12 16 44 H 0.11 1.18 8.06 -52.49 -0.42 0.76 16 45 H 0.11 1.11 8.06 -52.49 -0.42 0.69 16 46 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 47 H 0.13 1.97 7.72 -52.49 -0.41 1.56 16 LS Contribution 391.29 15.07 5.90 5.90 Total: -1.00 -30.64 391.29 -10.30 -40.93 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -7.11 Total: 8.10 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -3.87 Total: -22.39 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: -0.01 Total: -44.11 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: -0.19 Total: -4.82 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.64 -10.30 -40.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433015789.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.239 kcal (2) G-P(sol) polarization free energy of solvation -30.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds