Wall clock time and date at job start Tue Mar 31 2020 14:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35734 * 116.99783 * 2 1 4 4 C 1.39289 * 120.85007 * 359.97438 * 3 2 1 5 5 C 1.37946 * 119.09847 * 180.02562 * 4 3 2 6 6 N 1.31984 * 120.81831 * 359.97438 * 5 4 3 7 7 C 1.31948 * 121.86363 * 359.73022 * 6 5 4 8 8 C 1.37981 * 120.82149 * 0.53687 * 7 6 5 9 9 C 1.50704 * 120.45433 * 179.75274 * 8 7 6 10 10 N 1.46904 * 109.46978 * 259.72164 * 9 8 7 11 11 C 1.46901 * 110.99885 * 179.97438 * 10 9 8 12 12 H 1.09003 * 109.46917 * 34.99555 * 11 10 9 13 13 C 1.53000 * 109.47114 * 155.00130 * 11 10 9 14 14 C 1.53000 * 109.46745 * 294.99733 * 13 11 10 15 15 C 1.50707 * 109.46905 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99455 * 359.97438 * 15 14 13 17 17 C 1.37870 * 119.99905 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00297 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99808 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47118 * 90.00104 * 19 17 15 21 21 H 1.48501 * 109.47097 * 209.99931 * 19 17 15 22 22 H 1.48498 * 109.47048 * 329.99786 * 19 17 15 23 23 C 1.50703 * 109.47187 * 275.00428 * 11 10 9 24 24 C 1.38235 * 120.00292 * 139.99945 * 23 11 10 25 25 C 1.38230 * 119.99899 * 179.97438 * 24 23 11 26 26 C 1.38235 * 120.00326 * 359.95697 * 25 24 23 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99503 * 319.97237 * 23 11 10 29 29 H 1.09005 * 109.47211 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47029 * 300.00005 * 1 2 3 31 31 H 1.08998 * 109.47565 * 60.00103 * 1 2 3 32 32 H 1.08004 * 120.45226 * 359.97438 * 4 3 2 33 33 H 1.07994 * 119.59014 * 179.97438 * 5 4 3 34 34 H 1.08000 * 119.58706 * 180.28976 * 7 6 5 35 35 H 1.09003 * 109.47289 * 139.71982 * 9 8 7 36 36 H 1.08998 * 109.47108 * 19.72277 * 9 8 7 37 37 H 1.00894 * 110.99828 * 303.95066 * 10 9 8 38 38 H 1.08995 * 109.46916 * 54.99821 * 13 11 10 39 39 H 1.09003 * 109.46852 * 175.00189 * 13 11 10 40 40 H 1.08995 * 109.47486 * 299.99739 * 14 13 11 41 41 H 1.09003 * 109.47073 * 60.00592 * 14 13 11 42 42 H 0.97001 * 120.00122 * 180.02562 * 18 17 15 43 43 H 1.08001 * 119.99730 * 359.97438 * 24 23 11 44 44 H 1.08000 * 120.00376 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.00616 * 179.72578 * 26 25 24 46 46 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.00455 * 0.02562 * 28 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3040 2.3887 -0.0005 5 6 1.9674 3.5981 -0.0011 6 7 3.2864 3.6458 -0.0005 7 6 4.0230 2.5510 0.0058 8 6 3.4345 1.3030 0.0010 9 6 4.2838 0.0580 0.0027 10 7 4.3617 -0.4834 -1.3607 11 6 5.1841 -1.7000 -1.3978 12 1 5.0413 -2.2634 -0.4757 13 6 4.7671 -2.5613 -2.5916 14 6 3.3310 -3.0495 -2.3912 15 6 2.9204 -3.8985 -3.5668 16 1 3.6143 -4.0719 -4.3761 17 6 1.6587 -4.4527 -3.6097 18 7 0.8133 -4.2401 -2.6250 19 14 1.1495 -5.5043 -5.0672 20 1 1.4933 -6.9235 -4.7977 21 1 -0.3152 -5.3814 -5.2787 22 1 1.8656 -5.0439 -6.2840 23 6 6.6362 -1.3208 -1.5348 24 6 7.6010 -2.0123 -0.8264 25 6 8.9329 -1.6648 -0.9525 26 6 9.3003 -0.6263 -1.7877 27 6 8.3356 0.0643 -2.4972 28 6 7.0033 -0.2817 -2.3693 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 0.2244 2.3567 -0.0014 33 1 1.4006 4.5173 -0.0019 34 1 5.0999 2.6329 0.0107 35 1 3.8380 -0.6851 0.6638 36 1 5.2861 0.3024 0.3543 37 1 3.4405 -0.6578 -1.7337 38 1 4.8255 -1.9692 -3.5048 39 1 5.4347 -3.4193 -2.6715 40 1 3.2726 -3.6417 -1.4780 41 1 2.6634 -2.1916 -2.3114 42 1 -0.0742 -4.6304 -2.6550 43 1 7.3141 -2.8242 -0.1745 44 1 9.6867 -2.2047 -0.3988 45 1 10.3405 -0.3518 -1.8828 46 1 8.6224 0.8760 -3.1493 47 1 6.2496 0.2586 -2.9228 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000433015789.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:17 Heat of formation + Delta-G solvation = -4.617157 kcal Electronic energy + Delta-G solvation = -27477.754811 eV Core-core repulsion = 23817.438876 eV Total energy + Delta-G solvation = -3660.315935 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.69361 -40.34343 -39.16112 -37.89426 -35.50025 -34.19503 -32.18340 -31.93424 -31.68340 -31.30430 -28.55911 -28.16067 -26.17761 -24.97449 -23.85690 -23.35245 -22.76467 -22.45539 -20.98903 -19.29205 -18.62365 -18.10487 -17.53732 -16.94006 -16.76596 -16.58160 -16.44645 -16.06815 -15.86843 -15.54361 -15.17793 -15.13062 -14.74836 -14.54697 -14.36501 -14.11901 -13.98364 -13.94096 -13.57501 -13.44572 -13.29515 -12.91035 -12.81187 -12.52377 -12.49462 -12.33755 -12.04097 -11.97097 -11.82043 -11.61668 -11.31399 -11.11316 -10.54969 -10.51687 -10.12974 -9.81679 -9.67620 -9.46121 -9.35363 -8.19150 -6.29410 0.11059 0.34709 0.58148 0.65906 1.38772 1.39089 1.50265 2.20730 2.40151 2.76904 3.01612 3.13296 3.35989 3.55336 3.69241 3.83134 3.92108 4.04715 4.12396 4.20260 4.29775 4.30802 4.31764 4.33892 4.43324 4.46623 4.47802 4.63971 4.69424 4.72779 4.78714 4.80889 4.87341 4.96866 5.05014 5.10763 5.15524 5.25443 5.31949 5.50477 5.61665 5.67782 5.70119 5.75425 5.81210 5.83827 6.17932 6.23963 6.26134 6.26749 6.37679 6.85159 7.03593 7.38837 8.91631 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.006768 B = 0.005151 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4135.995995 B = 5434.124231 C = 8948.565525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.329 6.329 3 C 0.157 3.843 4 C -0.262 4.262 5 C 0.130 3.870 6 N -0.527 5.527 7 C 0.146 3.854 8 C -0.176 4.176 9 C 0.122 3.878 10 N -0.671 5.671 11 C 0.135 3.865 12 H 0.036 0.964 13 C -0.092 4.092 14 C 0.036 3.964 15 C -0.543 4.543 16 H 0.054 0.946 17 C 0.007 3.993 18 N -0.924 5.924 19 Si 0.958 3.042 20 H -0.274 1.274 21 H -0.280 1.280 22 H -0.267 1.267 23 C -0.077 4.077 24 C -0.134 4.134 25 C -0.125 4.125 26 C -0.128 4.128 27 C -0.129 4.129 28 C -0.099 4.099 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.162 0.838 33 H 0.189 0.811 34 H 0.174 0.826 35 H 0.024 0.976 36 H 0.089 0.911 37 H 0.341 0.659 38 H 0.053 0.947 39 H 0.052 0.948 40 H -0.016 1.016 41 H 0.000 1.000 42 H 0.263 0.737 43 H 0.118 0.882 44 H 0.141 0.859 45 H 0.145 0.855 46 H 0.137 0.863 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.266 13.439 6.997 16.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.240 6.240 3 C 0.103 3.897 4 C -0.282 4.282 5 C -0.026 4.026 6 N -0.240 5.240 7 C -0.010 4.010 8 C -0.180 4.180 9 C -0.007 4.007 10 N -0.304 5.304 11 C 0.026 3.974 12 H 0.054 0.946 13 C -0.130 4.130 14 C -0.002 4.002 15 C -0.581 4.581 16 H 0.072 0.928 17 C -0.191 4.191 18 N -0.564 5.564 19 Si 0.783 3.217 20 H -0.199 1.199 21 H -0.206 1.206 22 H -0.191 1.191 23 C -0.078 4.078 24 C -0.152 4.152 25 C -0.143 4.143 26 C -0.145 4.145 27 C -0.147 4.147 28 C -0.118 4.118 29 H 0.115 0.885 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.179 0.821 33 H 0.205 0.795 34 H 0.191 0.809 35 H 0.042 0.958 36 H 0.107 0.893 37 H 0.161 0.839 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.002 0.998 41 H 0.018 0.982 42 H 0.071 0.929 43 H 0.136 0.864 44 H 0.159 0.841 45 H 0.162 0.838 46 H 0.155 0.845 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 8.061 14.377 6.863 17.854 hybrid contribution -2.127 -2.344 -0.197 3.171 sum 5.934 12.033 6.665 14.981 Atomic orbital electron populations 1.23289 0.76123 1.04928 1.02640 1.86147 1.23788 1.26757 1.87274 1.19623 0.92520 0.85463 0.92081 1.22471 1.02715 0.92417 1.10641 1.23070 0.90062 0.97972 0.91506 1.67798 1.07980 1.32016 1.16198 1.22712 1.00901 0.85613 0.91736 1.20312 0.91096 0.97627 1.08926 1.20513 0.98461 0.92012 0.89757 1.60676 1.19181 1.29894 1.20612 1.20346 0.90415 0.89379 0.97304 0.94610 1.21578 0.97236 0.97539 0.96640 1.18921 0.91828 0.94459 0.94951 1.21615 0.99050 1.31273 1.06170 0.92767 1.25845 0.96636 0.97716 0.98900 1.70084 1.07070 1.45795 1.33462 0.85557 0.77415 0.79041 0.79697 1.19946 1.20550 1.19140 1.19859 0.93905 0.96567 0.97462 1.21198 0.93684 1.00109 1.00249 1.21328 0.95490 0.98051 0.99425 1.21428 1.00334 0.96035 0.96744 1.21422 0.92558 1.00602 1.00142 1.21039 0.96405 0.96523 0.97801 0.88471 0.90037 0.91560 0.82092 0.79454 0.80879 0.95804 0.89254 0.83923 0.92815 0.92901 0.99783 0.98181 0.92867 0.86354 0.84115 0.83764 0.84470 0.86479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 9.84 113.37 1.12 1.72 16 2 O -0.33 -10.82 9.86 -90.58 -0.89 -11.72 16 3 C 0.16 4.64 6.70 22.77 0.15 4.79 16 4 C -0.26 -6.04 9.11 22.45 0.20 -5.84 16 5 C 0.13 2.83 11.17 84.60 0.95 3.77 16 6 N -0.53 -13.62 10.36 -196.10 -2.03 -15.66 16 7 C 0.15 3.83 10.82 84.61 0.92 4.75 16 8 C -0.18 -5.16 5.42 -19.68 -0.11 -5.27 16 9 C 0.12 3.79 5.33 85.56 0.46 4.25 16 10 N -0.67 -23.61 5.54 -499.44 -2.77 -26.38 16 11 C 0.14 4.91 2.25 44.17 0.10 5.01 16 12 H 0.04 1.37 7.66 -2.39 -0.02 1.35 16 13 C -0.09 -3.97 4.72 30.59 0.14 -3.82 16 14 C 0.04 1.88 4.80 29.85 0.14 2.02 16 15 C -0.54 -31.16 9.11 25.60 0.23 -30.93 16 16 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 17 C 0.01 0.42 5.46 84.65 0.46 0.89 16 18 N -0.92 -55.02 13.29 21.44 0.28 -54.74 16 19 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 20 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 23 C -0.08 -2.42 4.71 -19.87 -0.09 -2.51 16 24 C -0.13 -3.73 9.67 22.27 0.22 -3.51 16 25 C -0.13 -2.85 10.05 22.27 0.22 -2.63 16 26 C -0.13 -2.71 10.05 22.27 0.22 -2.48 16 27 C -0.13 -3.07 10.05 22.27 0.22 -2.85 16 28 C -0.10 -2.90 9.32 22.27 0.21 -2.70 16 29 H 0.10 2.62 8.14 -2.38 -0.02 2.60 16 30 H 0.08 1.50 7.71 -2.39 -0.02 1.48 16 31 H 0.07 1.50 7.71 -2.39 -0.02 1.48 16 32 H 0.16 2.79 6.47 -2.91 -0.02 2.78 16 33 H 0.19 2.64 8.06 -2.91 -0.02 2.61 16 34 H 0.17 3.83 8.04 -2.91 -0.02 3.80 16 35 H 0.02 0.82 7.84 -2.39 -0.02 0.80 16 36 H 0.09 2.50 7.87 -2.39 -0.02 2.48 16 37 H 0.34 13.97 6.46 -89.70 -0.58 13.39 16 38 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 40 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 41 H 0.00 0.00 6.43 -2.39 -0.02 -0.02 16 42 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 43 H 0.12 3.15 8.04 -2.91 -0.02 3.13 16 44 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 45 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 46 H 0.14 2.60 8.06 -2.91 -0.02 2.57 16 47 H 0.12 3.63 7.72 -2.91 -0.02 3.61 16 Total: -1.00 -67.80 391.29 2.77 -65.04 By element: Atomic # 1 Polarization: 32.09 SS G_CDS: 0.38 Total: 32.47 kcal Atomic # 6 Polarization: -41.11 SS G_CDS: 5.77 Total: -35.34 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -4.51 Total: -96.77 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -0.89 Total: -11.72 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -67.80 2.77 -65.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433015789.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.420 kcal (2) G-P(sol) polarization free energy of solvation -67.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds