Wall clock time and date at job start Tue Mar 31 2020 14:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35742 * 116.99496 * 2 1 4 4 C 1.39293 * 120.84753 * 0.25639 * 3 2 1 5 5 C 1.37946 * 119.08917 * 180.28826 * 4 3 2 6 6 N 1.31980 * 120.82639 * 359.70527 * 5 4 3 7 7 C 1.31940 * 121.86211 * 0.02562 * 6 5 4 8 8 C 1.37993 * 120.82674 * 0.02562 * 7 6 5 9 9 C 1.50692 * 120.45681 * 179.97438 * 8 7 6 10 10 N 1.46900 * 109.47257 * 259.99804 * 9 8 7 11 11 C 1.46910 * 111.00108 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.46699 * 325.00745 * 11 10 9 13 13 C 1.52992 * 109.47127 * 205.00462 * 11 10 9 14 14 C 1.52997 * 109.47482 * 65.00091 * 13 11 10 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99594 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99875 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47061 * 90.00257 * 19 17 15 21 21 H 1.48497 * 109.46906 * 209.99430 * 19 17 15 22 22 H 1.48498 * 109.47403 * 329.99876 * 19 17 15 23 23 C 1.50700 * 109.46728 * 84.99872 * 11 10 9 24 24 C 1.38243 * 119.99881 * 39.73246 * 23 11 10 25 25 C 1.38230 * 119.99760 * 179.80336 * 24 23 11 26 26 C 1.38237 * 120.00010 * 0.39835 * 25 24 23 27 27 C 1.38228 * 120.00227 * 359.85651 * 26 25 24 28 28 C 1.38231 * 119.99932 * 359.95140 * 27 26 25 29 29 H 1.08996 * 109.47182 * 299.98918 * 1 2 3 30 30 H 1.08998 * 109.47528 * 59.99833 * 1 2 3 31 31 H 1.09004 * 109.46449 * 179.97438 * 1 2 3 32 32 H 1.07999 * 120.45387 * 0.02562 * 4 3 2 33 33 H 1.08005 * 119.58678 * 179.72532 * 5 4 3 34 34 H 1.08008 * 119.59107 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.47001 * 140.00277 * 9 8 7 36 36 H 1.08996 * 109.47470 * 20.00303 * 9 8 7 37 37 H 1.00903 * 111.00081 * 56.05181 * 10 9 8 38 38 H 1.09002 * 109.47103 * 304.99844 * 13 11 10 39 39 H 1.08998 * 109.46862 * 185.00656 * 13 11 10 40 40 H 1.09002 * 109.47153 * 59.99783 * 14 13 11 41 41 H 1.09001 * 109.46832 * 299.99974 * 14 13 11 42 42 H 0.97002 * 119.99739 * 180.02562 * 18 17 15 43 43 H 1.07998 * 119.99681 * 359.97438 * 24 23 11 44 44 H 1.08000 * 119.99734 * 180.22965 * 25 24 23 45 45 H 1.08005 * 119.99870 * 179.83255 * 26 25 24 46 46 H 1.07998 * 120.00222 * 179.97438 * 27 26 25 47 47 H 1.08000 * 120.00023 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3038 2.3888 0.0054 5 6 1.9673 3.5981 -0.0009 6 7 3.2863 3.6459 -0.0060 7 6 4.0228 2.5512 -0.0058 8 6 3.4345 1.3030 -0.0008 9 6 4.2838 0.0583 -0.0012 10 7 4.3560 -0.4849 -1.3642 11 6 5.1784 -1.7016 -1.4033 12 1 5.9973 -1.6096 -0.6898 13 6 5.7471 -1.8876 -2.8114 14 6 6.7073 -0.7397 -3.1295 15 6 7.2680 -0.9234 -4.5162 16 1 6.9690 -1.7736 -5.1113 17 6 8.1618 -0.0054 -5.0256 18 7 8.6507 -0.1655 -6.2359 19 14 8.6783 1.4655 -3.9965 20 1 9.8785 1.1128 -3.1962 21 1 8.9977 2.6073 -4.8905 22 1 7.5695 1.8457 -3.0848 23 6 4.3295 -2.8934 -1.0427 24 6 3.0323 -2.9852 -1.5114 25 6 2.2550 -4.0804 -1.1840 26 6 2.7722 -5.0798 -0.3810 27 6 4.0676 -4.9854 0.0920 28 6 4.8462 -3.8922 -0.2387 29 1 -0.3633 0.5136 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 0.2243 2.3566 0.0100 33 1 1.4004 4.5174 -0.0013 34 1 5.0998 2.6331 -0.0105 35 1 3.8408 -0.6841 0.6626 36 1 5.2876 0.3031 0.3459 37 1 4.7035 0.2070 -2.0113 38 1 4.9320 -1.8906 -3.5350 39 1 6.2833 -2.8351 -2.8643 40 1 7.5225 -0.7367 -2.4058 41 1 6.1710 0.2077 -3.0765 42 1 9.2798 0.4801 -6.5942 43 1 2.6270 -2.2026 -2.1357 44 1 1.2428 -4.1539 -1.5532 45 1 2.1640 -5.9342 -0.1230 46 1 4.4715 -5.7660 0.7196 47 1 5.8585 -3.8186 0.1305 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000433015790.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:21 Heat of formation + Delta-G solvation = -1.210889 kcal Electronic energy + Delta-G solvation = -27581.641152 eV Core-core repulsion = 23921.472924 eV Total energy + Delta-G solvation = -3660.168228 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.64797 -40.33750 -39.09671 -37.93109 -35.47702 -34.23411 -32.28430 -32.16135 -31.67802 -31.29845 -28.56401 -28.29574 -26.16995 -24.79688 -23.84541 -23.33585 -22.74678 -22.28275 -21.02057 -19.27386 -18.99145 -18.10802 -17.56370 -16.89294 -16.69699 -16.49801 -16.36793 -16.00440 -15.82690 -15.65302 -15.19998 -15.07766 -14.84516 -14.67829 -14.50426 -14.16811 -14.04746 -13.89705 -13.69252 -13.39972 -13.17638 -13.05823 -12.81540 -12.54549 -12.39461 -12.22641 -11.99040 -11.85178 -11.72967 -11.61090 -11.34902 -11.29609 -10.76767 -10.48413 -10.13941 -9.73977 -9.65752 -9.44520 -9.33904 -8.29687 -6.33701 0.08720 0.38791 0.59318 0.68147 1.34551 1.37067 1.47776 2.27913 2.34969 2.76376 3.02526 3.05893 3.34423 3.52008 3.69755 3.85015 3.92206 4.07960 4.14487 4.24012 4.28837 4.31336 4.37541 4.39980 4.42127 4.43111 4.47745 4.61248 4.69671 4.73984 4.77578 4.79205 4.85528 4.93861 4.97324 5.00786 5.13950 5.25117 5.32712 5.47611 5.50538 5.60636 5.65030 5.70695 5.76185 5.81865 6.19726 6.26382 6.29056 6.33592 6.41451 6.74263 7.04112 7.30581 8.87369 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.007657 B = 0.005036 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3655.860305 B = 5558.102049 C = 8486.449577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.309 6.309 3 C 0.182 3.818 4 C -0.263 4.263 5 C 0.126 3.874 6 N -0.535 5.535 7 C 0.126 3.874 8 C -0.180 4.180 9 C 0.122 3.878 10 N -0.675 5.675 11 C 0.135 3.865 12 H 0.051 0.949 13 C -0.087 4.087 14 C -0.006 4.006 15 C -0.530 4.530 16 H 0.028 0.972 17 C 0.006 3.994 18 N -0.952 5.952 19 Si 0.949 3.051 20 H -0.267 1.267 21 H -0.287 1.287 22 H -0.242 1.242 23 C -0.080 4.080 24 C -0.090 4.090 25 C -0.132 4.132 26 C -0.129 4.129 27 C -0.130 4.130 28 C -0.133 4.133 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.114 0.886 32 H 0.167 0.833 33 H 0.184 0.816 34 H 0.163 0.837 35 H 0.077 0.923 36 H 0.044 0.956 37 H 0.341 0.659 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.017 0.983 41 H 0.023 0.977 42 H 0.266 0.734 43 H 0.115 0.885 44 H 0.135 0.865 45 H 0.142 0.858 46 H 0.139 0.861 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.337 -0.641 19.428 27.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.219 6.219 3 C 0.127 3.873 4 C -0.283 4.283 5 C -0.030 4.030 6 N -0.248 5.248 7 C -0.029 4.029 8 C -0.184 4.184 9 C -0.007 4.007 10 N -0.308 5.308 11 C 0.026 3.974 12 H 0.069 0.931 13 C -0.125 4.125 14 C -0.043 4.043 15 C -0.568 4.568 16 H 0.047 0.953 17 C -0.191 4.191 18 N -0.593 5.593 19 Si 0.772 3.228 20 H -0.192 1.192 21 H -0.212 1.212 22 H -0.166 1.166 23 C -0.081 4.081 24 C -0.109 4.109 25 C -0.150 4.150 26 C -0.147 4.147 27 C -0.147 4.147 28 C -0.152 4.152 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.132 0.868 32 H 0.184 0.816 33 H 0.201 0.799 34 H 0.180 0.820 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.161 0.839 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.035 0.965 41 H 0.041 0.959 42 H 0.074 0.926 43 H 0.133 0.867 44 H 0.153 0.847 45 H 0.159 0.841 46 H 0.157 0.843 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -19.351 -0.344 19.352 27.369 hybrid contribution 0.956 0.238 -0.365 1.051 sum -18.395 -0.105 18.987 26.436 Atomic orbital electron populations 1.23389 0.76422 1.05566 1.02404 1.86192 1.23257 1.25609 1.86853 1.19310 0.91803 0.85522 0.90646 1.22493 1.02824 0.92332 1.10657 1.23073 0.89836 0.98439 0.91647 1.67750 1.08385 1.32247 1.16416 1.22741 1.00744 0.86528 0.92936 1.20285 0.92198 0.96734 1.09164 1.20512 0.96659 0.92640 0.90894 1.60517 1.55536 1.07521 1.07182 1.20376 0.92027 0.88708 0.96305 0.93071 1.21431 0.97844 0.98700 0.94504 1.19517 0.94878 0.95499 0.94447 1.21446 1.25435 1.09271 1.00634 0.95326 1.26005 0.95777 1.01286 0.96035 1.70075 1.32676 1.38282 1.18251 0.85680 0.79781 0.78328 0.79013 1.19197 1.21249 1.16566 1.19888 0.95125 0.95504 0.97542 1.20984 0.93548 0.97488 0.98860 1.21378 1.00481 0.94169 0.98964 1.21402 0.95937 0.99370 0.98002 1.21319 0.94702 0.98007 1.00712 1.21219 1.00298 0.94796 0.98844 0.91073 0.91672 0.86755 0.81587 0.79860 0.82030 0.90509 0.93795 0.83852 0.93143 0.92980 0.96492 0.95886 0.92553 0.86724 0.84745 0.84054 0.84308 0.85961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.84 113.37 1.12 1.32 16 2 O -0.31 -6.83 9.87 -90.66 -0.89 -7.72 16 3 C 0.18 4.24 6.71 22.77 0.15 4.40 16 4 C -0.26 -4.87 9.11 22.45 0.20 -4.66 16 5 C 0.13 2.54 11.17 84.60 0.95 3.48 16 6 N -0.54 -13.91 10.36 -196.08 -2.03 -15.94 16 7 C 0.13 3.29 10.82 84.62 0.92 4.20 16 8 C -0.18 -4.65 5.42 -19.68 -0.11 -4.76 16 9 C 0.12 3.25 5.33 85.55 0.46 3.71 16 10 N -0.67 -20.62 5.53 -499.47 -2.76 -23.39 16 11 C 0.14 4.34 2.25 44.16 0.10 4.44 16 12 H 0.05 1.61 7.66 -2.39 -0.02 1.59 16 13 C -0.09 -3.47 4.72 30.59 0.14 -3.32 16 14 C -0.01 -0.27 3.87 29.85 0.12 -0.16 16 15 C -0.53 -30.95 9.66 25.60 0.25 -30.70 16 16 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 17 C 0.01 0.33 5.47 84.66 0.46 0.79 16 18 N -0.95 -60.66 13.96 21.45 0.30 -60.36 16 19 Si 0.95 44.57 27.47 68.60 1.88 46.45 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 22 H -0.24 -10.39 6.54 99.48 0.65 -9.74 16 23 C -0.08 -2.36 4.71 -19.86 -0.09 -2.46 16 24 C -0.09 -2.56 9.33 22.27 0.21 -2.36 16 25 C -0.13 -3.07 10.05 22.27 0.22 -2.85 16 26 C -0.13 -2.71 10.05 22.27 0.22 -2.48 16 27 C -0.13 -2.88 10.05 22.27 0.22 -2.66 16 28 C -0.13 -3.51 9.67 22.27 0.22 -3.30 16 29 H 0.07 0.65 7.70 -2.39 -0.02 0.63 16 30 H 0.06 0.72 7.72 -2.39 -0.02 0.70 16 31 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.17 1.94 6.47 -2.91 -0.02 1.92 16 33 H 0.18 2.39 8.06 -2.91 -0.02 2.37 16 34 H 0.16 3.85 8.04 -2.91 -0.02 3.83 16 35 H 0.08 2.10 7.79 -2.39 -0.02 2.08 16 36 H 0.04 1.11 7.93 -2.39 -0.02 1.09 16 37 H 0.34 11.54 6.46 -89.69 -0.58 10.96 16 38 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 41 H 0.02 1.03 5.48 -2.39 -0.01 1.02 16 42 H 0.27 15.79 8.31 -92.71 -0.77 15.01 16 43 H 0.11 3.50 7.71 -2.91 -0.02 3.47 16 44 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 45 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 46 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 47 H 0.12 2.97 8.04 -2.91 -0.02 2.95 16 Total: -1.00 -72.17 387.68 2.58 -69.60 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 0.33 Total: 28.72 kcal Atomic # 6 Polarization: -43.11 SS G_CDS: 5.75 Total: -37.36 kcal Atomic # 7 Polarization: -95.20 SS G_CDS: -4.49 Total: -99.69 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -0.89 Total: -7.72 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.45 kcal Total: -72.17 2.58 -69.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433015790.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.384 kcal (2) G-P(sol) polarization free energy of solvation -72.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds