Wall clock time and date at job start Tue Mar 31 2020 14:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 H 1.08989 * 109.47407 * 54.99632 * 11 10 9 13 13 N 1.46904 * 109.46937 * 294.99269 * 11 10 9 14 14 C 1.46905 * 110.99946 * 155.00140 * 13 11 10 15 15 C 1.50696 * 109.46878 * 180.02562 * 14 13 11 16 16 N 1.30827 * 125.96180 * 274.71154 * 15 14 13 17 17 C 1.33247 * 109.83048 * 179.86593 * 16 15 14 18 18 C 1.50694 * 125.52684 * 180.12723 * 17 16 15 19 19 C 1.53005 * 117.49863 * 189.04685 * 18 17 16 20 20 C 1.53002 * 117.49840 * 120.39146 * 18 17 16 21 21 N 1.30716 * 108.94396 * 0.40917 * 17 16 15 22 22 N 1.34427 * 125.95952 * 95.02830 * 15 14 13 23 23 H 0.97000 * 126.82947 * 359.93798 * 22 15 14 24 24 C 1.50703 * 109.47021 * 175.00079 * 11 10 9 25 25 C 1.38229 * 120.00284 * 79.72402 * 24 11 10 26 26 C 1.38236 * 120.00346 * 179.81143 * 25 24 11 27 27 C 1.38237 * 119.99569 * 0.39336 * 26 25 24 28 28 C 1.38238 * 120.00063 * 359.86046 * 27 26 25 29 29 C 1.38231 * 120.00013 * 359.95172 * 28 27 26 30 30 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 32 32 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 33 33 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 34 34 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 35 35 H 1.00900 * 110.99634 * 31.04998 * 13 11 10 36 36 H 1.08995 * 109.46802 * 300.00584 * 14 13 11 37 37 H 1.09000 * 109.46580 * 60.00400 * 14 13 11 38 38 H 1.09003 * 115.55337 * 334.71618 * 18 17 16 39 39 H 1.09001 * 117.49507 * 0.02562 * 19 18 17 40 40 H 1.09000 * 117.50098 * 145.02174 * 19 18 17 41 41 H 1.09001 * 117.49571 * 214.98173 * 20 18 17 42 42 H 1.08997 * 117.49736 * 359.97055 * 20 18 17 43 43 H 1.08007 * 120.00195 * 359.97438 * 25 24 11 44 44 H 1.07997 * 120.00593 * 180.22646 * 26 25 24 45 45 H 1.08006 * 120.00008 * 179.83446 * 27 26 25 46 46 H 1.08003 * 119.99543 * 179.97438 * 28 27 26 47 47 H 1.07996 * 119.99958 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 1 0.7883 -5.0030 -0.8591 13 7 0.7279 -5.1244 1.2373 14 6 -0.4308 -6.0104 1.0621 15 6 -1.1763 -6.1262 2.3666 16 7 -0.9042 -6.9622 3.3354 17 6 -1.7637 -6.7870 4.3384 18 6 -1.7704 -7.5612 5.6312 19 6 -2.9626 -7.3601 6.5689 20 6 -1.5969 -6.7702 6.9293 21 7 -2.6038 -5.8386 4.0166 22 7 -2.2407 -5.3926 2.7353 23 1 -2.6720 -4.6935 2.2193 24 6 2.4547 -6.1293 -0.1459 25 6 3.1521 -6.5711 0.9627 26 6 4.0433 -7.6214 0.8454 27 6 4.2429 -8.2244 -0.3824 28 6 3.5493 -7.7791 -1.4921 29 6 2.6553 -6.7315 -1.3739 30 1 -0.4850 0.8401 -0.0004 31 1 0.6242 -2.5609 0.8844 32 1 0.6244 -2.5529 -0.8956 33 1 2.8718 -3.6005 -0.9002 34 1 2.8717 -3.6084 0.8798 35 1 0.4434 -4.2225 1.5889 36 1 -1.0925 -5.5968 0.3012 37 1 -0.0894 -6.9972 0.7494 38 1 -1.3285 -8.5566 5.5855 39 1 -3.7422 -6.6681 6.2505 40 1 -3.3047 -8.2230 7.1403 41 1 -1.0410 -7.2452 7.7377 42 1 -1.4774 -5.6898 6.8482 43 1 2.9990 -6.0975 1.9213 44 1 4.5855 -7.9690 1.7123 45 1 4.9411 -9.0433 -0.4747 46 1 3.7056 -8.2501 -2.4514 47 1 2.1131 -6.3838 -2.2408 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000433020301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:25 Heat of formation + Delta-G solvation = 124.666101 kcal Electronic energy + Delta-G solvation = -26672.388453 eV Core-core repulsion = 23049.971412 eV Total energy + Delta-G solvation = -3622.417041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.13297 -39.28906 -37.37148 -36.66388 -33.64226 -32.47173 -32.31683 -30.65202 -30.35319 -30.25175 -26.90675 -25.00702 -24.52057 -23.52202 -22.53100 -22.26749 -21.08213 -20.83475 -19.86830 -19.69618 -17.95332 -16.82034 -16.34991 -15.93094 -15.72497 -15.38270 -15.13035 -14.90737 -14.67848 -14.51352 -13.93389 -13.73685 -13.08702 -13.03825 -12.94623 -12.52414 -12.46260 -12.32210 -12.15765 -11.78385 -11.68334 -11.62405 -11.22451 -11.01425 -10.96951 -10.81272 -10.69764 -10.63915 -10.52323 -9.95511 -9.91964 -9.86352 -9.50425 -9.36945 -9.24529 -8.64526 -8.46777 -8.36068 -8.30828 -6.10881 -4.12587 1.53727 1.63356 1.69746 2.62006 2.75064 3.26459 3.33323 3.36992 3.69732 3.89756 4.05325 4.37812 4.41445 4.52422 4.65998 4.76012 4.88207 5.02697 5.11573 5.17538 5.22327 5.26250 5.40168 5.47599 5.48339 5.52865 5.62873 5.68141 5.77647 5.83180 5.91987 5.94353 5.98244 6.20234 6.27576 6.31736 6.36230 6.42221 6.63405 6.73840 6.79119 6.82698 6.90971 7.04791 7.24553 7.27907 7.44945 7.58750 7.64512 7.87618 8.15160 8.30933 8.93423 9.52434 11.00336 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.006911 B = 0.003870 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4050.511311 B = 7234.068704 C =10388.090578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.109 4.109 11 C 0.128 3.872 12 H 0.053 0.947 13 N -0.673 5.673 14 C 0.137 3.863 15 C 0.299 3.701 16 N -0.518 5.518 17 C 0.252 3.748 18 C -0.069 4.069 19 C -0.163 4.163 20 C -0.159 4.159 21 N -0.315 5.315 22 N -0.478 5.478 23 H 0.442 0.558 24 C -0.066 4.066 25 C -0.081 4.081 26 C -0.127 4.127 27 C -0.130 4.130 28 C -0.127 4.127 29 C -0.121 4.121 30 H 0.260 0.740 31 H 0.013 0.987 32 H 0.014 0.986 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.357 0.643 36 H 0.055 0.945 37 H 0.106 0.894 38 H 0.130 0.870 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.130 0.870 44 H 0.116 0.884 45 H 0.113 0.887 46 H 0.115 0.885 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.699 -17.372 4.888 18.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.147 4.147 11 C 0.018 3.982 12 H 0.071 0.929 13 N -0.309 5.309 14 C 0.005 3.995 15 C 0.020 3.980 16 N -0.247 5.247 17 C -0.030 4.030 18 C -0.090 4.090 19 C -0.201 4.201 20 C -0.197 4.197 21 N -0.145 5.145 22 N -0.196 5.196 23 H 0.288 0.712 24 C -0.067 4.067 25 C -0.100 4.100 26 C -0.146 4.146 27 C -0.148 4.148 28 C -0.146 4.146 29 C -0.139 4.139 30 H 0.070 0.930 31 H 0.032 0.968 32 H 0.032 0.968 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.180 0.820 36 H 0.073 0.927 37 H 0.124 0.876 38 H 0.148 0.852 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.116 0.884 43 H 0.148 0.852 44 H 0.134 0.866 45 H 0.131 0.869 46 H 0.133 0.867 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.758 -17.765 5.612 18.714 hybrid contribution -0.346 2.083 -1.127 2.393 sum -2.105 -15.683 4.485 16.447 Atomic orbital electron populations 1.69938 1.06065 1.26707 1.50876 1.25004 0.94858 0.99318 0.95149 0.86589 0.79939 0.83348 0.78145 1.20646 1.21227 1.19782 1.21199 0.93141 0.90819 1.50579 0.92551 1.19137 0.93975 0.91755 0.96643 1.21847 0.99273 0.91750 1.01783 1.20598 0.93533 0.94203 0.89834 0.92889 1.60416 1.22362 1.18376 1.29703 1.20439 0.90913 1.01061 0.87061 1.24244 0.87734 0.88967 0.97099 1.70299 1.27445 1.26143 1.00796 1.23160 0.90382 0.93874 0.95578 1.20028 1.05391 0.99213 0.84362 1.23044 0.91884 1.03601 1.01541 1.23043 0.99751 1.00380 0.96555 1.77890 1.24400 1.17229 0.94976 1.48043 1.25454 1.31890 1.14193 0.71177 1.19966 0.97414 0.96170 0.93147 1.21057 0.94237 0.95581 0.99086 1.21157 0.99039 0.97093 0.97263 1.21052 1.00231 1.00319 0.93248 1.20997 0.97585 0.97662 0.98311 1.21028 0.99224 0.96504 0.97146 0.92993 0.96844 0.96764 0.92116 0.92004 0.82042 0.92687 0.87552 0.85223 0.87882 0.87999 0.87801 0.88432 0.85248 0.86624 0.86870 0.86714 0.86493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.72 13.29 55.43 0.74 -24.98 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.03 9.11 -34.44 -0.31 -14.35 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.52 4.80 -27.88 -0.13 0.38 16 10 C -0.11 -2.07 4.72 -26.74 -0.13 -2.20 16 11 C 0.13 1.99 2.24 -68.86 -0.15 1.83 16 12 H 0.05 0.81 7.66 -51.94 -0.40 0.41 16 13 N -0.67 -10.13 5.55 -109.22 -0.61 -10.74 16 14 C 0.14 1.79 6.10 -4.97 -0.03 1.76 16 15 C 0.30 4.29 7.75 -155.70 -1.21 3.08 16 16 N -0.52 -8.18 11.19 -8.16 -0.09 -8.27 16 17 C 0.25 3.72 7.69 -156.85 -1.21 2.52 16 18 C -0.07 -0.78 6.33 -91.77 -0.58 -1.36 16 19 C -0.16 -1.50 10.14 -26.69 -0.27 -1.77 16 20 C -0.16 -1.54 10.24 -26.69 -0.27 -1.81 16 21 N -0.32 -4.73 12.34 32.42 0.40 -4.33 16 22 N -0.48 -6.54 7.45 32.62 0.24 -6.29 16 23 H 0.44 4.99 8.96 -182.33 -1.63 3.36 16 24 C -0.07 -0.97 4.71 -104.62 -0.49 -1.46 16 25 C -0.08 -1.19 9.32 -39.59 -0.37 -1.56 16 26 C -0.13 -1.65 10.05 -39.58 -0.40 -2.05 16 27 C -0.13 -1.57 10.05 -39.58 -0.40 -1.96 16 28 C -0.13 -1.55 10.05 -39.58 -0.40 -1.95 16 29 C -0.12 -1.61 9.67 -39.58 -0.38 -2.00 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.01 0.33 6.43 -51.93 -0.33 -0.01 16 32 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.36 6.00 6.46 -39.29 -0.25 5.75 16 36 H 0.06 0.63 8.05 -51.93 -0.42 0.21 16 37 H 0.11 1.37 8.00 -51.93 -0.42 0.95 16 38 H 0.13 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.10 1.06 7.88 -51.93 -0.41 0.65 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.13 1.99 7.73 -52.48 -0.41 1.58 16 44 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 45 H 0.11 1.09 8.06 -52.48 -0.42 0.67 16 46 H 0.11 1.13 8.06 -52.48 -0.42 0.71 16 47 H 0.12 1.42 8.04 -52.49 -0.42 1.00 16 LS Contribution 395.51 15.07 5.96 5.96 Total: -1.00 -31.09 395.51 -13.67 -44.75 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -8.46 Total: 9.13 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -6.83 Total: -21.40 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 0.68 Total: -54.62 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.09 -13.67 -44.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433020301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.419 kcal (2) G-P(sol) polarization free energy of solvation -31.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds