Wall clock time and date at job start Tue Mar 31 2020 14:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 H 1.08989 * 109.47407 * 54.99632 * 11 10 9 13 13 N 1.46904 * 109.46937 * 294.99269 * 11 10 9 14 14 C 1.46905 * 110.99946 * 155.00140 * 13 11 10 15 15 C 1.50696 * 109.46878 * 180.02562 * 14 13 11 16 16 N 1.30827 * 125.96180 * 274.71154 * 15 14 13 17 17 C 1.33247 * 109.83048 * 179.86593 * 16 15 14 18 18 C 1.50694 * 125.52684 * 180.12723 * 17 16 15 19 19 C 1.53005 * 117.49863 * 189.04685 * 18 17 16 20 20 C 1.53002 * 117.49840 * 120.39146 * 18 17 16 21 21 N 1.30716 * 108.94396 * 0.40917 * 17 16 15 22 22 N 1.34427 * 125.95952 * 95.02830 * 15 14 13 23 23 H 0.97000 * 126.82947 * 359.93798 * 22 15 14 24 24 C 1.50703 * 109.47021 * 175.00079 * 11 10 9 25 25 C 1.38229 * 120.00284 * 79.72402 * 24 11 10 26 26 C 1.38236 * 120.00346 * 179.81143 * 25 24 11 27 27 C 1.38237 * 119.99569 * 0.39336 * 26 25 24 28 28 C 1.38238 * 120.00063 * 359.86046 * 27 26 25 29 29 C 1.38231 * 120.00013 * 359.95172 * 28 27 26 30 30 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 32 32 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 33 33 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 34 34 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 35 35 H 1.00900 * 110.99634 * 31.04998 * 13 11 10 36 36 H 1.08995 * 109.46802 * 300.00584 * 14 13 11 37 37 H 1.09000 * 109.46580 * 60.00400 * 14 13 11 38 38 H 1.09003 * 115.55337 * 334.71618 * 18 17 16 39 39 H 1.09001 * 117.49507 * 0.02562 * 19 18 17 40 40 H 1.09000 * 117.50098 * 145.02174 * 19 18 17 41 41 H 1.09001 * 117.49571 * 214.98173 * 20 18 17 42 42 H 1.08997 * 117.49736 * 359.97055 * 20 18 17 43 43 H 1.08007 * 120.00195 * 359.97438 * 25 24 11 44 44 H 1.07997 * 120.00593 * 180.22646 * 26 25 24 45 45 H 1.08006 * 120.00008 * 179.83446 * 27 26 25 46 46 H 1.08003 * 119.99543 * 179.97438 * 28 27 26 47 47 H 1.07996 * 119.99958 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 1 0.7883 -5.0030 -0.8591 13 7 0.7279 -5.1244 1.2373 14 6 -0.4308 -6.0104 1.0621 15 6 -1.1763 -6.1262 2.3666 16 7 -0.9042 -6.9622 3.3354 17 6 -1.7637 -6.7870 4.3384 18 6 -1.7704 -7.5612 5.6312 19 6 -2.9626 -7.3601 6.5689 20 6 -1.5969 -6.7702 6.9293 21 7 -2.6038 -5.8386 4.0166 22 7 -2.2407 -5.3926 2.7353 23 1 -2.6720 -4.6935 2.2193 24 6 2.4547 -6.1293 -0.1459 25 6 3.1521 -6.5711 0.9627 26 6 4.0433 -7.6214 0.8454 27 6 4.2429 -8.2244 -0.3824 28 6 3.5493 -7.7791 -1.4921 29 6 2.6553 -6.7315 -1.3739 30 1 -0.4850 0.8401 -0.0004 31 1 0.6242 -2.5609 0.8844 32 1 0.6244 -2.5529 -0.8956 33 1 2.8718 -3.6005 -0.9002 34 1 2.8717 -3.6084 0.8798 35 1 0.4434 -4.2225 1.5889 36 1 -1.0925 -5.5968 0.3012 37 1 -0.0894 -6.9972 0.7494 38 1 -1.3285 -8.5566 5.5855 39 1 -3.7422 -6.6681 6.2505 40 1 -3.3047 -8.2230 7.1403 41 1 -1.0410 -7.2452 7.7377 42 1 -1.4774 -5.6898 6.8482 43 1 2.9990 -6.0975 1.9213 44 1 4.5855 -7.9690 1.7123 45 1 4.9411 -9.0433 -0.4747 46 1 3.7056 -8.2501 -2.4514 47 1 2.1131 -6.3838 -2.2408 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000433020301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:24 Heat of formation + Delta-G solvation = 108.441444 kcal Electronic energy + Delta-G solvation = -26673.092007 eV Core-core repulsion = 23049.971412 eV Total energy + Delta-G solvation = -3623.120595 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.24563 -40.38653 -38.26478 -37.81899 -35.43426 -33.89741 -33.47547 -31.91086 -31.66286 -31.35579 -28.40993 -26.44860 -25.50212 -24.99135 -23.31725 -23.26078 -22.53378 -21.98333 -21.02477 -20.85482 -19.06734 -18.61757 -17.53725 -17.04187 -16.90161 -16.57373 -16.46351 -16.17506 -15.99343 -15.56363 -15.13787 -14.77948 -14.49955 -14.21571 -14.18987 -14.06003 -13.71037 -13.58125 -13.31942 -13.14847 -12.91962 -12.77662 -12.53629 -12.42742 -12.33085 -12.12168 -12.00671 -11.80880 -11.62188 -11.46638 -11.32438 -11.13822 -11.08835 -10.99468 -10.55452 -10.41130 -9.65855 -9.53475 -9.44066 -8.22391 -6.30954 0.42618 0.60019 0.68284 1.38219 1.39131 1.49642 1.56233 1.66885 2.39192 2.73891 3.01087 3.02334 3.11656 3.23848 3.51785 3.65634 3.90960 3.96448 4.06715 4.12028 4.17163 4.30770 4.32381 4.44031 4.44993 4.48174 4.53771 4.71092 4.76782 4.79252 4.88438 4.88795 5.03630 5.09816 5.12752 5.21467 5.25138 5.26357 5.32614 5.35607 5.50909 5.62936 5.71008 5.75614 5.77957 5.82631 6.00704 6.13293 6.19444 6.23999 6.30867 6.84105 7.02991 7.37791 8.88300 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.006911 B = 0.003870 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4050.511311 B = 7234.068704 C =10388.090578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.955 3.045 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.541 4.541 8 H 0.054 0.946 9 C 0.030 3.970 10 C -0.092 4.092 11 C 0.140 3.860 12 H 0.057 0.943 13 N -0.676 5.676 14 C 0.143 3.857 15 C 0.297 3.703 16 N -0.542 5.542 17 C 0.243 3.757 18 C -0.091 4.091 19 C -0.147 4.147 20 C -0.153 4.153 21 N -0.334 5.334 22 N -0.476 5.476 23 H 0.450 0.550 24 C -0.080 4.080 25 C -0.098 4.098 26 C -0.134 4.134 27 C -0.128 4.128 28 C -0.127 4.127 29 C -0.129 4.129 30 H 0.262 0.738 31 H 0.001 0.999 32 H -0.005 1.005 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.344 0.656 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.143 0.857 39 H 0.089 0.911 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.078 0.922 43 H 0.113 0.887 44 H 0.132 0.868 45 H 0.142 0.858 46 H 0.142 0.858 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.738 -18.836 4.773 19.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.780 3.220 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.579 4.579 8 H 0.072 0.928 9 C -0.007 4.007 10 C -0.130 4.130 11 C 0.031 3.969 12 H 0.075 0.925 13 N -0.310 5.310 14 C 0.012 3.988 15 C 0.018 3.982 16 N -0.271 5.271 17 C -0.039 4.039 18 C -0.112 4.112 19 C -0.184 4.184 20 C -0.192 4.192 21 N -0.164 5.164 22 N -0.195 5.195 23 H 0.298 0.702 24 C -0.081 4.081 25 C -0.116 4.116 26 C -0.152 4.152 27 C -0.146 4.146 28 C -0.145 4.145 29 C -0.147 4.147 30 H 0.071 0.929 31 H 0.019 0.981 32 H 0.013 0.987 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.165 0.835 36 H 0.091 0.909 37 H 0.130 0.870 38 H 0.160 0.840 39 H 0.107 0.893 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.096 0.904 43 H 0.131 0.869 44 H 0.150 0.850 45 H 0.160 0.840 46 H 0.160 0.840 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.797 -19.236 5.487 20.019 hybrid contribution -0.629 2.496 -1.095 2.797 sum -1.426 -16.740 4.391 17.365 Atomic orbital electron populations 1.70046 1.07401 1.27570 1.51732 1.25822 0.95719 1.02812 0.94850 0.85591 0.78775 0.79158 0.78432 1.19839 1.20889 1.19157 1.21649 0.93400 0.92521 1.50316 0.92765 1.18992 0.94201 0.92471 0.95002 1.21582 0.98204 0.92212 1.01039 1.20371 0.93554 0.92880 0.90111 0.92495 1.60417 1.23343 1.17725 1.29550 1.20457 0.90481 1.00890 0.86964 1.24403 0.87797 0.88799 0.97242 1.70304 1.28251 1.27067 1.01518 1.23839 0.89765 0.93796 0.96462 1.20284 1.07639 0.99688 0.83547 1.23109 0.90972 1.04056 1.00303 1.23101 1.00549 0.99327 0.96213 1.77847 1.25146 1.17880 0.95550 1.48031 1.25398 1.31995 1.14048 0.70223 1.19853 0.97817 0.96437 0.94011 1.21026 0.95446 0.96665 0.98465 1.21395 0.98632 0.96525 0.98597 1.21420 1.00081 1.00510 0.92572 1.21347 0.96575 0.96918 0.99649 1.21229 0.99747 0.96940 0.96823 0.92896 0.98056 0.98666 0.92408 0.93036 0.83491 0.90883 0.87038 0.83959 0.89281 0.85062 0.85219 0.90354 0.86895 0.85002 0.84024 0.84030 0.85488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.04 13.29 21.45 0.28 -53.75 16 2 C 0.01 0.34 5.46 84.66 0.46 0.81 16 3 Si 0.96 43.63 29.54 68.60 2.03 45.66 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 7 C -0.54 -29.77 9.11 25.60 0.23 -29.53 16 8 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 9 C 0.03 1.48 4.80 29.85 0.14 1.63 16 10 C -0.09 -3.61 4.72 30.59 0.14 -3.47 16 11 C 0.14 4.42 2.24 44.17 0.10 4.51 16 12 H 0.06 1.74 7.66 -2.39 -0.02 1.72 16 13 N -0.68 -20.90 5.55 -499.47 -2.77 -23.67 16 14 C 0.14 3.76 6.10 85.55 0.52 4.28 16 15 C 0.30 8.66 7.75 138.23 1.07 9.73 16 16 N -0.54 -17.34 11.19 -179.74 -2.01 -19.35 16 17 C 0.24 7.25 7.69 138.63 1.07 8.32 16 18 C -0.09 -2.00 6.33 -11.54 -0.07 -2.07 16 19 C -0.15 -2.51 10.14 30.62 0.31 -2.20 16 20 C -0.15 -2.82 10.24 30.62 0.31 -2.51 16 21 N -0.33 -10.24 12.34 -51.33 -0.63 -10.88 16 22 N -0.48 -13.34 7.45 -50.71 -0.38 -13.72 16 23 H 0.45 10.50 8.96 -213.10 -1.91 8.59 16 24 C -0.08 -2.32 4.71 -19.87 -0.09 -2.41 16 25 C -0.10 -2.82 9.32 22.27 0.21 -2.62 16 26 C -0.13 -3.24 10.05 22.27 0.22 -3.02 16 27 C -0.13 -2.70 10.05 22.27 0.22 -2.48 16 28 C -0.13 -2.73 10.05 22.27 0.22 -2.51 16 29 C -0.13 -3.25 9.67 22.27 0.22 -3.03 16 30 H 0.26 14.50 8.31 -92.70 -0.77 13.72 16 31 H 0.00 0.06 6.43 -2.38 -0.02 0.05 16 32 H -0.01 -0.26 8.14 -2.39 -0.02 -0.28 16 33 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 34 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.34 12.10 6.46 -89.69 -0.58 11.53 16 36 H 0.07 1.65 8.05 -2.39 -0.02 1.63 16 37 H 0.11 2.83 8.00 -2.39 -0.02 2.81 16 38 H 0.14 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.09 1.80 7.88 -2.39 -0.02 1.78 16 40 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.11 3.57 7.73 -2.91 -0.02 3.55 16 44 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 45 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 46 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 47 H 0.13 2.87 8.04 -2.91 -0.02 2.84 16 Total: -1.00 -67.38 395.51 0.30 -67.08 By element: Atomic # 1 Polarization: 36.71 SS G_CDS: -1.51 Total: 35.20 kcal Atomic # 6 Polarization: -31.87 SS G_CDS: 5.29 Total: -26.58 kcal Atomic # 7 Polarization: -115.85 SS G_CDS: -5.51 Total: -121.36 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -67.38 0.30 -67.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433020301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.518 kcal (2) G-P(sol) polarization free energy of solvation -67.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds