Wall clock time and date at job start Tue Mar 31 2020 14:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99840 * 2 1 4 4 H 1.48497 * 109.47120 * 239.99305 * 3 2 1 5 5 H 1.48501 * 109.47011 * 359.97438 * 3 2 1 6 6 H 1.48510 * 109.47173 * 119.99410 * 3 2 1 7 7 C 1.37881 * 120.00476 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00057 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99681 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47086 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47184 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47117 * 304.99790 * 11 10 9 13 13 N 1.46896 * 109.47252 * 64.99997 * 11 10 9 14 14 C 1.46897 * 111.00314 * 205.00070 * 13 11 10 15 15 C 1.50694 * 109.47666 * 180.02562 * 14 13 11 16 16 N 1.30829 * 125.96014 * 274.71931 * 15 14 13 17 17 C 1.33248 * 109.83063 * 179.86080 * 16 15 14 18 18 C 1.50698 * 125.52929 * 180.12618 * 17 16 15 19 19 C 1.52996 * 117.49883 * 189.04293 * 18 17 16 20 20 C 1.52995 * 117.49742 * 120.38106 * 18 17 16 21 21 N 1.30714 * 108.94134 * 0.40491 * 17 16 15 22 22 N 1.34431 * 125.96189 * 95.01955 * 15 14 13 23 23 H 0.96993 * 126.82101 * 359.95192 * 22 15 14 24 24 C 1.50703 * 109.46987 * 185.00436 * 11 10 9 25 25 C 1.38235 * 120.00292 * 99.99885 * 24 11 10 26 26 C 1.38230 * 119.99899 * 179.97438 * 25 24 11 27 27 C 1.38235 * 120.00326 * 359.95697 * 26 25 24 28 28 C 1.38234 * 119.99814 * 359.97438 * 27 26 25 29 29 C 1.38234 * 119.99503 * 279.97178 * 24 11 10 30 30 H 0.96998 * 120.00198 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.46738 * 59.99753 * 9 7 2 32 32 H 1.08995 * 109.46822 * 299.99927 * 9 7 2 33 33 H 1.09007 * 109.47097 * 60.00012 * 10 9 7 34 34 H 1.08998 * 109.47470 * 300.00394 * 10 9 7 35 35 H 1.00896 * 110.99881 * 328.95442 * 13 11 10 36 36 H 1.09000 * 109.46944 * 300.00492 * 14 13 11 37 37 H 1.09000 * 109.46941 * 59.99682 * 14 13 11 38 38 H 1.09003 * 115.54559 * 334.71193 * 18 17 16 39 39 H 1.09001 * 117.49732 * 359.97438 * 19 18 17 40 40 H 1.09002 * 117.49789 * 145.02115 * 19 18 17 41 41 H 1.08999 * 117.49994 * 214.97791 * 20 18 17 42 42 H 1.08999 * 117.50340 * 359.97438 * 20 18 17 43 43 H 1.08001 * 119.99730 * 359.97438 * 25 24 11 44 44 H 1.08000 * 120.00376 * 179.97438 * 26 25 24 45 45 H 1.08000 * 120.00616 * 179.72578 * 27 26 25 46 46 H 1.08001 * 120.00299 * 179.97438 * 28 27 26 47 47 H 1.07997 * 120.00455 * 0.02562 * 29 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 -0.0001 12 1 0.7880 -5.0073 0.8415 13 7 0.7291 -5.1182 -1.2556 14 6 -0.4295 -6.0051 -1.0857 15 6 -1.1735 -6.1155 -2.3915 16 7 -2.0903 -5.2892 -2.8255 17 6 -2.5323 -5.6898 -4.0170 18 6 -3.5878 -4.9952 -4.8383 19 6 -4.1095 -5.7225 -6.0791 20 6 -3.1904 -4.5081 -6.2332 21 7 -1.9061 -6.7862 -4.3552 22 7 -1.0151 -7.0832 -3.3110 23 1 -0.4061 -7.8366 -3.2630 24 6 2.4551 -6.1298 0.1238 25 6 2.6549 -6.7381 1.3490 26 6 3.5485 -7.7866 1.4624 27 6 4.2417 -8.2274 0.3507 28 6 4.0408 -7.6201 -0.8747 29 6 3.1488 -6.5700 -0.9878 30 1 -0.4850 0.8400 -0.0004 31 1 0.6248 -2.5571 -0.8897 32 1 0.6242 -2.5567 0.8903 33 1 2.8721 -3.6043 0.8906 34 1 2.8721 -3.6043 -0.8894 35 1 0.4449 -4.2145 -1.6029 36 1 -0.0884 -6.9935 -0.7776 37 1 -1.0919 -5.5954 -0.3231 38 1 -4.2966 -4.3874 -4.2759 39 1 -3.6890 -6.7032 -6.3016 40 1 -5.1615 -5.5929 -6.3333 41 1 -3.6381 -3.5801 -6.5888 42 1 -2.1655 -4.6897 -6.5567 43 1 2.1128 -6.3941 2.2174 44 1 3.7050 -8.2616 2.4197 45 1 4.9432 -9.0437 0.4402 46 1 4.5826 -7.9642 -1.7433 47 1 2.9927 -6.0949 -1.9450 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000433020303.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:28 Heat of formation + Delta-G solvation = 124.977555 kcal Electronic energy + Delta-G solvation = -26689.751517 eV Core-core repulsion = 23067.347981 eV Total energy + Delta-G solvation = -3622.403535 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.12846 -39.36662 -37.32772 -36.66129 -33.57783 -32.43169 -32.34729 -30.75332 -30.38153 -30.22953 -26.88728 -24.95989 -24.50414 -23.51848 -22.48257 -22.36177 -21.07448 -20.81439 -19.87782 -19.66785 -18.01649 -16.83045 -16.30615 -15.91300 -15.62455 -15.40307 -15.18875 -14.85835 -14.55928 -14.46226 -14.10087 -13.95071 -13.20251 -13.11445 -12.73638 -12.48644 -12.41128 -12.26606 -11.99858 -11.97082 -11.67499 -11.59111 -11.18752 -11.03839 -10.91966 -10.86340 -10.65582 -10.61539 -10.50083 -9.94542 -9.90665 -9.82104 -9.44585 -9.34940 -9.17592 -8.76154 -8.44186 -8.39727 -8.29706 -6.00057 -4.03029 1.49089 1.56629 1.58817 2.61479 2.77211 3.33765 3.38485 3.40779 3.72350 3.93287 3.95555 4.41831 4.46650 4.57349 4.68399 4.81299 4.91988 5.01885 5.06113 5.09746 5.13833 5.31224 5.35714 5.50773 5.52576 5.53607 5.67061 5.69219 5.71067 5.77774 5.88771 5.99822 6.02022 6.12269 6.22458 6.27898 6.37758 6.42503 6.57806 6.65125 6.73651 6.78540 6.96561 7.03511 7.17104 7.23355 7.51577 7.66933 7.75063 7.97249 8.15931 8.39772 9.02849 9.61338 11.10710 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.006074 B = 0.004382 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4608.622837 B = 6387.832645 C =10386.470766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.107 4.107 11 C 0.125 3.875 12 H 0.056 0.944 13 N -0.679 5.679 14 C 0.135 3.865 15 C 0.302 3.698 16 N -0.526 5.526 17 C 0.259 3.741 18 C -0.071 4.071 19 C -0.163 4.163 20 C -0.158 4.158 21 N -0.320 5.320 22 N -0.474 5.474 23 H 0.440 0.560 24 C -0.064 4.064 25 C -0.120 4.120 26 C -0.125 4.125 27 C -0.131 4.131 28 C -0.129 4.129 29 C -0.090 4.090 30 H 0.261 0.739 31 H 0.018 0.982 32 H 0.015 0.985 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.367 0.633 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.132 0.868 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.119 0.881 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.115 0.885 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.547 -17.743 -5.063 18.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.145 4.145 11 C 0.016 3.984 12 H 0.073 0.927 13 N -0.316 5.316 14 C 0.003 3.997 15 C 0.022 3.978 16 N -0.255 5.255 17 C -0.023 4.023 18 C -0.092 4.092 19 C -0.200 4.200 20 C -0.196 4.196 21 N -0.150 5.150 22 N -0.191 5.191 23 H 0.285 0.715 24 C -0.065 4.065 25 C -0.138 4.138 26 C -0.143 4.143 27 C -0.150 4.150 28 C -0.147 4.147 29 C -0.108 4.108 30 H 0.071 0.929 31 H 0.036 0.964 32 H 0.033 0.967 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.191 0.809 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.150 0.850 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.115 0.885 43 H 0.137 0.863 44 H 0.134 0.866 45 H 0.132 0.868 46 H 0.133 0.867 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.595 -18.158 -5.798 19.128 hybrid contribution 0.500 0.994 0.785 1.362 sum -1.095 -17.164 -5.013 17.914 Atomic orbital electron populations 1.69945 1.05975 1.26768 1.50354 1.25000 0.94818 0.99177 0.95217 0.86685 0.79615 0.83255 0.78608 1.20250 1.21286 1.20283 1.21133 0.92959 0.90896 1.51093 0.92750 1.19139 0.93884 0.91508 0.97038 1.21840 0.99263 0.91855 1.01566 1.20616 0.93499 0.94103 0.90178 0.92655 1.60551 1.22082 1.19382 1.29564 1.20419 0.91292 0.99929 0.88084 1.24249 0.93722 0.85943 0.93852 1.70376 1.14111 1.28846 1.12128 1.23128 0.96609 0.91150 0.91407 1.20066 0.97526 1.02985 0.88585 1.23038 0.99850 0.97612 0.99548 1.23038 1.01027 0.98743 0.96804 1.77861 1.08402 1.18872 1.09824 1.47903 1.32833 1.23960 1.14442 0.71487 1.20045 0.97345 0.95983 0.93085 1.21074 0.99132 0.96320 0.97302 1.21030 0.97404 0.97574 0.98329 1.21056 1.00241 1.00432 0.93233 1.21159 0.99019 0.97186 0.97361 1.21057 0.94818 0.95787 0.99144 0.92901 0.96404 0.96702 0.92233 0.92180 0.80918 0.89172 0.90916 0.85047 0.87988 0.87982 0.87688 0.88509 0.86299 0.86608 0.86828 0.86683 0.85386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.52 4.80 -27.88 -0.13 0.39 16 10 C -0.11 -2.08 4.72 -26.73 -0.13 -2.21 16 11 C 0.13 1.95 2.25 -68.86 -0.15 1.80 16 12 H 0.06 0.87 7.66 -51.93 -0.40 0.47 16 13 N -0.68 -10.22 5.54 -109.23 -0.60 -10.83 16 14 C 0.13 1.75 6.10 -4.98 -0.03 1.72 16 15 C 0.30 4.33 7.75 -155.70 -1.21 3.13 16 16 N -0.53 -8.86 11.19 -8.16 -0.09 -8.95 16 17 C 0.26 3.97 7.69 -156.85 -1.21 2.76 16 18 C -0.07 -0.88 6.33 -91.78 -0.58 -1.46 16 19 C -0.16 -1.58 10.14 -26.69 -0.27 -1.85 16 20 C -0.16 -1.66 10.24 -26.69 -0.27 -1.93 16 21 N -0.32 -4.66 12.34 32.42 0.40 -4.26 16 22 N -0.47 -6.02 7.45 32.62 0.24 -5.78 16 23 H 0.44 4.14 8.96 -182.34 -1.63 2.51 16 24 C -0.06 -0.89 4.71 -104.62 -0.49 -1.38 16 25 C -0.12 -1.53 9.67 -39.59 -0.38 -1.91 16 26 C -0.13 -1.43 10.05 -39.59 -0.40 -1.82 16 27 C -0.13 -1.45 10.05 -39.58 -0.40 -1.85 16 28 C -0.13 -1.51 10.05 -39.58 -0.40 -1.91 16 29 C -0.09 -1.19 9.32 -39.58 -0.37 -1.56 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.02 0.46 6.42 -51.93 -0.33 0.13 16 32 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.37 6.63 6.46 -39.29 -0.25 6.37 16 36 H 0.09 0.97 8.00 -51.93 -0.42 0.55 16 37 H 0.07 0.99 8.06 -51.93 -0.42 0.57 16 38 H 0.13 1.53 8.14 -51.93 -0.42 1.10 16 39 H 0.10 1.05 7.88 -51.93 -0.41 0.64 16 40 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.12 1.39 8.04 -52.49 -0.42 0.97 16 44 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 45 H 0.11 1.00 8.06 -52.49 -0.42 0.58 16 46 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 47 H 0.13 1.76 7.72 -52.49 -0.41 1.36 16 LS Contribution 395.49 15.07 5.96 5.96 Total: -1.00 -31.82 395.49 -13.67 -45.49 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -8.46 Total: 8.80 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -6.83 Total: -21.27 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.68 Total: -55.54 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.82 -13.67 -45.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433020303.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.465 kcal (2) G-P(sol) polarization free energy of solvation -31.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds