Wall clock time and date at job start Tue Mar 31 2020 14:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99840 * 2 1 4 4 H 1.48497 * 109.47120 * 239.99305 * 3 2 1 5 5 H 1.48501 * 109.47011 * 359.97438 * 3 2 1 6 6 H 1.48510 * 109.47173 * 119.99410 * 3 2 1 7 7 C 1.37881 * 120.00476 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00057 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99681 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47086 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47184 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47117 * 304.99790 * 11 10 9 13 13 N 1.46896 * 109.47252 * 64.99997 * 11 10 9 14 14 C 1.46897 * 111.00314 * 205.00070 * 13 11 10 15 15 C 1.50694 * 109.47666 * 180.02562 * 14 13 11 16 16 N 1.30829 * 125.96014 * 274.71931 * 15 14 13 17 17 C 1.33248 * 109.83063 * 179.86080 * 16 15 14 18 18 C 1.50698 * 125.52929 * 180.12618 * 17 16 15 19 19 C 1.52996 * 117.49883 * 189.04293 * 18 17 16 20 20 C 1.52995 * 117.49742 * 120.38106 * 18 17 16 21 21 N 1.30714 * 108.94134 * 0.40491 * 17 16 15 22 22 N 1.34431 * 125.96189 * 95.01955 * 15 14 13 23 23 H 0.96993 * 126.82101 * 359.95192 * 22 15 14 24 24 C 1.50703 * 109.46987 * 185.00436 * 11 10 9 25 25 C 1.38235 * 120.00292 * 99.99885 * 24 11 10 26 26 C 1.38230 * 119.99899 * 179.97438 * 25 24 11 27 27 C 1.38235 * 120.00326 * 359.95697 * 26 25 24 28 28 C 1.38234 * 119.99814 * 359.97438 * 27 26 25 29 29 C 1.38234 * 119.99503 * 279.97178 * 24 11 10 30 30 H 0.96998 * 120.00198 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.46738 * 59.99753 * 9 7 2 32 32 H 1.08995 * 109.46822 * 299.99927 * 9 7 2 33 33 H 1.09007 * 109.47097 * 60.00012 * 10 9 7 34 34 H 1.08998 * 109.47470 * 300.00394 * 10 9 7 35 35 H 1.00896 * 110.99881 * 328.95442 * 13 11 10 36 36 H 1.09000 * 109.46944 * 300.00492 * 14 13 11 37 37 H 1.09000 * 109.46941 * 59.99682 * 14 13 11 38 38 H 1.09003 * 115.54559 * 334.71193 * 18 17 16 39 39 H 1.09001 * 117.49732 * 359.97438 * 19 18 17 40 40 H 1.09002 * 117.49789 * 145.02115 * 19 18 17 41 41 H 1.08999 * 117.49994 * 214.97791 * 20 18 17 42 42 H 1.08999 * 117.50340 * 359.97438 * 20 18 17 43 43 H 1.08001 * 119.99730 * 359.97438 * 25 24 11 44 44 H 1.08000 * 120.00376 * 179.97438 * 26 25 24 45 45 H 1.08000 * 120.00616 * 179.72578 * 27 26 25 46 46 H 1.08001 * 120.00299 * 179.97438 * 28 27 26 47 47 H 1.07997 * 120.00455 * 0.02562 * 29 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 -0.0001 12 1 0.7880 -5.0073 0.8415 13 7 0.7291 -5.1182 -1.2556 14 6 -0.4295 -6.0051 -1.0857 15 6 -1.1735 -6.1155 -2.3915 16 7 -2.0903 -5.2892 -2.8255 17 6 -2.5323 -5.6898 -4.0170 18 6 -3.5878 -4.9952 -4.8383 19 6 -4.1095 -5.7225 -6.0791 20 6 -3.1904 -4.5081 -6.2332 21 7 -1.9061 -6.7862 -4.3552 22 7 -1.0151 -7.0832 -3.3110 23 1 -0.4061 -7.8366 -3.2630 24 6 2.4551 -6.1298 0.1238 25 6 2.6549 -6.7381 1.3490 26 6 3.5485 -7.7866 1.4624 27 6 4.2417 -8.2274 0.3507 28 6 4.0408 -7.6201 -0.8747 29 6 3.1488 -6.5700 -0.9878 30 1 -0.4850 0.8400 -0.0004 31 1 0.6248 -2.5571 -0.8897 32 1 0.6242 -2.5567 0.8903 33 1 2.8721 -3.6043 0.8906 34 1 2.8721 -3.6043 -0.8894 35 1 0.4449 -4.2145 -1.6029 36 1 -0.0884 -6.9935 -0.7776 37 1 -1.0919 -5.5954 -0.3231 38 1 -4.2966 -4.3874 -4.2759 39 1 -3.6890 -6.7032 -6.3016 40 1 -5.1615 -5.5929 -6.3333 41 1 -3.6381 -3.5801 -6.5888 42 1 -2.1655 -4.6897 -6.5567 43 1 2.1128 -6.3941 2.2174 44 1 3.7050 -8.2616 2.4197 45 1 4.9432 -9.0437 0.4402 46 1 4.5826 -7.9642 -1.7433 47 1 2.9927 -6.0949 -1.9450 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000433020303.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:28 Heat of formation + Delta-G solvation = 107.769415 kcal Electronic energy + Delta-G solvation = -26690.497718 eV Core-core repulsion = 23067.347981 eV Total energy + Delta-G solvation = -3623.149736 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.25132 -40.41282 -38.26435 -37.82474 -35.41164 -33.88661 -33.50473 -31.91456 -31.68990 -31.36045 -28.40921 -26.43105 -25.50876 -24.99241 -23.33769 -23.27198 -22.53472 -21.96036 -21.05006 -20.86941 -19.14117 -18.56459 -17.57076 -17.04836 -16.67699 -16.57824 -16.52055 -16.22503 -15.97034 -15.54094 -15.13320 -15.12308 -14.48806 -14.20864 -14.14979 -13.98070 -13.70014 -13.42669 -13.31813 -13.09187 -13.07161 -12.79813 -12.53053 -12.43631 -12.30560 -12.11405 -12.00908 -11.82139 -11.63270 -11.47522 -11.31577 -11.13189 -11.10340 -11.03558 -10.52901 -10.38888 -9.69565 -9.58137 -9.47704 -8.17872 -6.28693 0.42085 0.56834 0.64269 1.40053 1.42310 1.50216 1.58413 1.66052 2.41648 2.73061 2.98629 3.01007 3.14868 3.25425 3.52958 3.63325 3.89825 3.94125 4.05945 4.10596 4.16996 4.29169 4.32205 4.40791 4.44710 4.46635 4.56170 4.70142 4.75208 4.77214 4.85583 4.87968 5.03726 5.08068 5.14050 5.20248 5.23897 5.24027 5.29748 5.32740 5.52114 5.63314 5.69062 5.74070 5.75597 5.85207 6.05508 6.11402 6.16064 6.23848 6.28659 6.87364 7.03706 7.40284 8.92759 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.006074 B = 0.004382 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4608.622837 B = 6387.832645 C =10386.470766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.958 3.042 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.056 0.944 9 C 0.030 3.970 10 C -0.091 4.091 11 C 0.137 3.863 12 H 0.052 0.948 13 N -0.675 5.675 14 C 0.141 3.859 15 C 0.300 3.700 16 N -0.567 5.567 17 C 0.246 3.754 18 C -0.100 4.100 19 C -0.139 4.139 20 C -0.155 4.155 21 N -0.327 5.327 22 N -0.460 5.460 23 H 0.454 0.546 24 C -0.078 4.078 25 C -0.129 4.129 26 C -0.125 4.125 27 C -0.127 4.127 28 C -0.131 4.131 29 C -0.100 4.100 30 H 0.263 0.737 31 H -0.002 1.002 32 H -0.010 1.010 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.347 0.653 36 H 0.119 0.881 37 H 0.066 0.934 38 H 0.133 0.867 39 H 0.096 0.904 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.083 0.917 43 H 0.124 0.876 44 H 0.141 0.859 45 H 0.142 0.858 46 H 0.135 0.865 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.238 -19.279 -5.186 19.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.783 3.217 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.075 0.925 9 C -0.007 4.007 10 C -0.129 4.129 11 C 0.028 3.972 12 H 0.070 0.930 13 N -0.309 5.309 14 C 0.010 3.990 15 C 0.021 3.979 16 N -0.297 5.297 17 C -0.035 4.035 18 C -0.120 4.120 19 C -0.176 4.176 20 C -0.193 4.193 21 N -0.158 5.158 22 N -0.179 5.179 23 H 0.303 0.697 24 C -0.079 4.079 25 C -0.148 4.148 26 C -0.143 4.143 27 C -0.145 4.145 28 C -0.149 4.149 29 C -0.119 4.119 30 H 0.071 0.929 31 H 0.016 0.984 32 H 0.008 0.992 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.168 0.832 36 H 0.137 0.863 37 H 0.084 0.916 38 H 0.151 0.849 39 H 0.114 0.886 40 H 0.147 0.853 41 H 0.142 0.858 42 H 0.102 0.898 43 H 0.142 0.858 44 H 0.158 0.842 45 H 0.160 0.840 46 H 0.153 0.847 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.255 -19.742 -5.917 20.611 hybrid contribution 0.122 1.401 0.831 1.633 sum -0.133 -18.341 -5.086 19.034 Atomic orbital electron populations 1.70080 1.07613 1.27698 1.51393 1.25888 0.95668 1.03029 0.94766 0.85609 0.78382 0.78630 0.79085 1.19436 1.20882 1.19200 1.21614 0.93383 0.92454 1.50745 0.92531 1.18981 0.94168 0.92800 0.94791 1.21569 0.98078 0.92210 1.01062 1.20375 0.93544 0.93067 0.90198 0.93002 1.60594 1.22833 1.18273 1.29219 1.20463 0.90401 1.00719 0.87430 1.24307 0.93423 0.85992 0.94210 1.70352 1.15559 1.30379 1.13424 1.23668 0.97168 0.91398 0.91300 1.20273 0.97810 1.04615 0.89331 1.23107 1.01079 0.96810 0.96629 1.23101 1.00829 1.00188 0.95202 1.77797 1.08781 1.18804 1.10376 1.47816 1.32530 1.23985 1.13591 0.69727 1.19821 0.97804 0.96085 0.94147 1.21226 0.99747 0.96896 0.96885 1.21345 0.96465 0.96817 0.99693 1.21428 0.99950 1.00563 0.92589 1.21404 0.98422 0.96416 0.98633 1.21039 0.95673 0.96688 0.98479 0.92864 0.98385 0.99176 0.92394 0.92799 0.83214 0.86308 0.91647 0.84917 0.88573 0.85261 0.85801 0.89830 0.85806 0.84164 0.84024 0.84708 0.86490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.60 13.29 21.45 0.28 -56.32 16 2 C 0.00 0.28 5.46 84.66 0.46 0.74 16 3 Si 0.96 44.61 29.54 68.60 2.03 46.63 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 7 C -0.54 -30.88 9.11 25.60 0.23 -30.65 16 8 H 0.06 3.11 7.74 -2.92 -0.02 3.08 16 9 C 0.03 1.53 4.80 29.85 0.14 1.67 16 10 C -0.09 -3.65 4.72 30.59 0.14 -3.51 16 11 C 0.14 4.38 2.25 44.17 0.10 4.48 16 12 H 0.05 1.67 7.66 -2.39 -0.02 1.66 16 13 N -0.68 -21.04 5.54 -499.48 -2.77 -23.80 16 14 C 0.14 3.74 6.10 85.56 0.52 4.26 16 15 C 0.30 8.79 7.75 138.22 1.07 9.86 16 16 N -0.57 -19.86 11.19 -179.73 -2.01 -21.87 16 17 C 0.25 7.72 7.69 138.63 1.07 8.79 16 18 C -0.10 -2.48 6.33 -11.54 -0.07 -2.55 16 19 C -0.14 -2.52 10.14 30.62 0.31 -2.21 16 20 C -0.15 -3.19 10.24 30.62 0.31 -2.87 16 21 N -0.33 -9.56 12.34 -51.33 -0.63 -10.20 16 22 N -0.46 -11.60 7.45 -50.71 -0.38 -11.97 16 23 H 0.45 8.14 8.96 -213.11 -1.91 6.23 16 24 C -0.08 -2.11 4.71 -19.87 -0.09 -2.20 16 25 C -0.13 -3.08 9.67 22.27 0.22 -2.86 16 26 C -0.13 -2.47 10.05 22.27 0.22 -2.25 16 27 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 28 C -0.13 -2.72 10.05 22.27 0.22 -2.49 16 29 C -0.10 -2.56 9.32 22.27 0.21 -2.35 16 30 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 31 H 0.00 -0.11 6.42 -2.39 -0.02 -0.13 16 32 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 33 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 34 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.35 13.33 6.46 -89.70 -0.58 12.75 16 36 H 0.12 2.44 8.00 -2.39 -0.02 2.42 16 37 H 0.07 1.84 8.06 -2.39 -0.02 1.83 16 38 H 0.13 3.17 8.14 -2.39 -0.02 3.15 16 39 H 0.10 1.89 7.88 -2.39 -0.02 1.87 16 40 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.12 2.75 8.04 -2.91 -0.02 2.73 16 44 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 45 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 46 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 47 H 0.12 3.19 7.72 -2.91 -0.02 3.17 16 Total: -1.00 -70.36 395.49 0.31 -70.05 By element: Atomic # 1 Polarization: 35.28 SS G_CDS: -1.50 Total: 33.78 kcal Atomic # 6 Polarization: -31.59 SS G_CDS: 5.29 Total: -26.30 kcal Atomic # 7 Polarization: -118.66 SS G_CDS: -5.50 Total: -124.16 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -70.36 0.31 -70.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433020303.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.816 kcal (2) G-P(sol) polarization free energy of solvation -70.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds