Wall clock time and date at job start Tue Mar 31 2020 14:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 115.54603 * 2 1 4 4 N 1.46890 * 109.47283 * 34.33021 * 3 2 1 5 5 C 1.46908 * 111.00177 * 179.97438 * 4 3 2 6 6 C 1.50693 * 109.47219 * 184.75219 * 5 4 3 7 7 C 1.35073 * 126.07222 * 105.51378 * 6 5 4 8 8 N 1.35049 * 107.98703 * 180.25677 * 7 6 5 9 9 C 1.46505 * 125.93130 * 179.74337 * 8 7 6 10 10 C 1.50703 * 109.47181 * 124.99850 * 9 8 7 11 11 H 1.08003 * 119.99771 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00023 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99919 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 119.99996 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46973 * 90.00406 * 14 12 10 16 16 H 1.48501 * 109.47140 * 210.00091 * 14 12 10 17 17 H 1.48502 * 109.47158 * 330.00375 * 14 12 10 18 18 N 1.40077 * 108.14193 * 359.76098 * 8 7 6 19 19 C 1.31653 * 108.09968 * 0.02562 * 18 8 7 20 20 C 1.48365 * 126.03747 * 179.97438 * 19 18 8 21 21 C 1.39777 * 120.90238 * 317.69143 * 20 19 18 22 22 C 1.37965 * 119.01799 * 180.02562 * 21 20 19 23 23 N 1.31931 * 120.88151 * 0.02562 * 22 21 20 24 24 C 1.31939 * 122.00362 * 0.02562 * 23 22 21 25 25 C 1.37953 * 120.88371 * 359.97438 * 24 23 22 26 26 C 1.52997 * 117.52337 * 145.70189 * 2 1 3 27 27 C 1.52997 * 60.00210 * 107.48044 * 26 2 1 28 28 H 1.09003 * 109.47497 * 85.58493 * 1 2 3 29 29 H 1.09003 * 109.46735 * 205.58182 * 1 2 3 30 30 H 1.08998 * 109.47353 * 325.58084 * 1 2 3 31 31 H 1.09007 * 109.47073 * 274.32742 * 3 2 1 32 32 H 1.09009 * 109.46810 * 154.33519 * 3 2 1 33 33 H 1.00908 * 111.00125 * 56.04771 * 4 3 2 34 34 H 1.08998 * 109.46573 * 64.75583 * 5 4 3 35 35 H 1.08998 * 109.46906 * 304.75730 * 5 4 3 36 36 H 1.08003 * 126.00932 * 0.02562 * 7 6 5 37 37 H 1.09000 * 109.47175 * 245.00011 * 9 8 7 38 38 H 1.08999 * 109.46911 * 4.99745 * 9 8 7 39 39 H 0.96998 * 119.99837 * 179.97438 * 13 12 10 40 40 H 1.07991 * 120.49263 * 0.02562 * 21 20 19 41 41 H 1.07999 * 119.55838 * 179.97438 * 22 21 20 42 42 H 1.07999 * 119.55461 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.49118 * 180.02562 * 25 24 23 44 44 H 1.09000 * 117.50120 * 214.97427 * 26 2 1 45 45 H 1.09004 * 117.49334 * 359.97438 * 26 2 1 46 46 H 1.08992 * 117.50162 * 252.51490 * 27 26 2 47 47 H 1.09006 * 117.49934 * 107.48668 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1898 1.3805 0.0000 4 7 1.3691 2.3154 0.7810 5 6 1.9735 3.6542 0.8036 6 6 1.1691 4.5534 1.7066 7 6 1.5261 4.9643 2.9428 8 7 0.5381 5.7501 3.4226 9 6 0.5183 6.4014 4.7347 10 6 0.3052 7.8827 4.5571 11 1 0.1959 8.2975 3.5659 12 6 0.2497 8.7083 5.6600 13 7 0.3832 8.2032 6.8669 14 14 -0.0137 10.5444 5.4398 15 1 -1.4688 10.8410 5.4541 16 1 0.6515 11.2763 6.5476 17 1 0.5667 10.9757 4.1427 18 7 -0.4646 5.8340 2.4481 19 6 -0.0878 5.1164 1.4106 20 6 -0.8539 4.9295 0.1539 21 6 -2.2337 4.7074 0.1806 22 6 -2.9075 4.5381 -1.0113 23 7 -2.2668 4.5833 -2.1637 24 6 -0.9654 4.7896 -2.2326 25 6 -0.2153 4.9687 -1.0888 26 6 2.2370 -1.1209 0.7646 27 6 2.2364 -1.1207 -0.7654 28 1 -0.3634 0.0791 -1.0246 29 1 -0.3633 -0.9270 0.4438 30 1 -0.3634 0.8477 0.5809 31 1 2.2765 1.7417 -1.0248 32 1 3.1822 1.3088 0.4451 33 1 1.2201 1.9705 1.7175 34 1 1.9817 4.0661 -0.2055 35 1 2.9955 3.5852 1.1763 36 1 2.4394 4.7065 3.4585 37 1 -0.2925 5.9869 5.3339 38 1 1.4684 6.2290 5.2403 39 1 0.3445 8.7841 7.6427 40 1 -2.7644 4.6688 1.1203 41 1 -3.9736 4.3656 -1.0008 42 1 -0.4810 4.8187 -3.1974 43 1 0.8495 5.1376 -1.1526 44 1 3.1721 -0.8749 1.2676 45 1 1.6120 -1.8584 1.2682 46 1 1.6112 -1.8582 -1.2686 47 1 3.1713 -0.8745 -1.2690 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000433300738.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:20 Heat of formation + Delta-G solvation = 131.037002 kcal Electronic energy + Delta-G solvation = -26986.570682 eV Core-core repulsion = 23364.429904 eV Total energy + Delta-G solvation = -3622.140778 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.77153 -39.50877 -38.63031 -35.45780 -33.96205 -32.88194 -31.13611 -30.94111 -30.18893 -28.50133 -27.55418 -25.92619 -24.22086 -23.71796 -23.07526 -22.58977 -22.00699 -20.09600 -19.60882 -19.01405 -16.85085 -16.69784 -16.03721 -15.84492 -15.59792 -15.39724 -15.00047 -14.95360 -14.41732 -14.24870 -13.98378 -13.66034 -13.52111 -13.23700 -13.16944 -12.97924 -12.59383 -12.30411 -12.26158 -12.13358 -11.99598 -11.68850 -11.58108 -11.30016 -11.17439 -11.04301 -10.91237 -10.36759 -10.32264 -10.08624 -9.96572 -9.76139 -9.43716 -9.31273 -8.94033 -8.71996 -8.48238 -8.31727 -7.75246 -6.32943 -4.38496 1.30794 1.38180 2.59256 3.14237 3.19409 3.25525 3.28601 3.38589 3.56309 4.11476 4.24062 4.27462 4.59127 4.62346 4.72291 4.77201 4.85075 5.00430 5.02674 5.04486 5.22243 5.29582 5.38151 5.39315 5.42986 5.44627 5.55039 5.60399 5.67329 5.69791 5.80443 5.91187 5.91876 5.93444 5.95714 6.05831 6.13475 6.16799 6.38008 6.44297 6.53670 6.81701 6.88926 6.92477 7.07084 7.19251 7.44956 7.59820 7.76184 7.84887 8.15480 8.40546 8.69719 9.28014 10.76021 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011829 B = 0.003252 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.435418 B = 8608.829899 C =10309.956536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.119 4.119 3 C 0.097 3.903 4 N -0.677 5.677 5 C 0.144 3.856 6 C -0.245 4.245 7 C 0.056 3.944 8 N -0.317 5.317 9 C 0.256 3.744 10 C -0.531 4.531 11 H 0.069 0.931 12 C 0.064 3.936 13 N -0.894 5.894 14 Si 0.908 3.092 15 H -0.276 1.276 16 H -0.284 1.284 17 H -0.272 1.272 18 N -0.258 5.258 19 C 0.084 3.916 20 C 0.070 3.930 21 C -0.151 4.151 22 C 0.095 3.905 23 N -0.494 5.494 24 C 0.094 3.906 25 C -0.148 4.148 26 C -0.180 4.180 27 C -0.177 4.177 28 H 0.054 0.946 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.027 0.973 33 H 0.342 0.658 34 H 0.074 0.926 35 H 0.030 0.970 36 H 0.165 0.835 37 H 0.047 0.953 38 H 0.056 0.944 39 H 0.268 0.732 40 H 0.134 0.866 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.132 0.868 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.460 -15.118 -13.655 20.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.119 4.119 3 C -0.033 4.033 4 N -0.308 5.308 5 C 0.014 3.986 6 C -0.258 4.258 7 C -0.095 4.095 8 N -0.097 5.097 9 C 0.139 3.861 10 C -0.570 4.570 11 H 0.087 0.913 12 C -0.139 4.139 13 N -0.532 5.532 14 Si 0.735 3.265 15 H -0.202 1.202 16 H -0.209 1.209 17 H -0.197 1.197 18 N -0.083 5.083 19 C -0.079 4.079 20 C 0.060 3.940 21 C -0.172 4.172 22 C -0.062 4.062 23 N -0.203 5.203 24 C -0.062 4.062 25 C -0.169 4.169 26 C -0.217 4.217 27 C -0.214 4.214 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.160 0.840 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.182 0.818 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.152 0.848 41 H 0.169 0.831 42 H 0.168 0.832 43 H 0.150 0.850 44 H 0.108 0.892 45 H 0.110 0.890 46 H 0.111 0.889 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.675 -14.178 -14.044 20.026 hybrid contribution 1.923 0.406 1.358 2.389 sum 3.598 -13.772 -12.685 19.066 Atomic orbital electron populations 1.21244 0.91277 1.02094 1.02068 1.21532 0.95707 0.90223 1.04487 1.21416 0.93150 0.89906 0.98800 1.60550 1.48810 1.01770 1.19648 1.20085 0.93401 0.87052 0.98023 1.19583 0.98313 1.10667 0.97261 1.22264 0.95588 0.96337 0.95276 1.49429 1.11687 1.33938 1.14643 1.19801 0.99436 0.93439 0.73470 1.21222 1.51252 0.90437 0.94058 0.91263 1.24935 0.94480 0.99805 0.94718 1.69911 1.49114 1.36258 0.97940 0.86319 0.78654 0.83571 0.77949 1.20210 1.20918 1.19658 1.77695 1.12602 1.20834 0.97158 1.20254 0.94431 0.99533 0.93673 1.18045 0.92058 0.93679 0.90215 1.22212 0.94149 1.00646 1.00152 1.22559 1.00020 0.96174 0.87407 1.67576 1.10346 1.13006 1.29417 1.22509 0.89693 0.96053 0.97986 1.22055 1.01253 1.01429 0.92188 1.23174 1.02389 1.01842 0.94330 1.22996 1.02403 1.01657 0.94357 0.92737 0.93584 0.89989 0.90877 0.95462 0.83981 0.90777 0.95159 0.81780 0.93488 0.92631 0.92224 0.84788 0.83062 0.83169 0.84993 0.89154 0.88986 0.88903 0.89056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 9.73 37.16 0.36 -0.75 16 2 C -0.12 -1.11 2.50 -154.51 -0.39 -1.50 16 3 C 0.10 0.94 5.82 -3.83 -0.02 0.92 16 4 N -0.68 -7.69 5.05 -115.06 -0.58 -8.27 16 5 C 0.14 1.77 5.70 -4.97 -0.03 1.74 16 6 C -0.25 -3.93 5.55 -104.76 -0.58 -4.51 16 7 C 0.06 0.97 11.32 -17.26 -0.20 0.78 16 8 N -0.32 -6.84 3.67 -62.58 -0.23 -7.07 16 9 C 0.26 6.21 6.26 -5.19 -0.03 6.18 16 10 C -0.53 -14.38 9.23 -34.44 -0.32 -14.70 16 11 H 0.07 1.95 7.81 -52.48 -0.41 1.54 16 12 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -24.76 13.29 55.43 0.74 -24.03 16 14 Si 0.91 21.07 29.54 -169.99 -5.02 16.05 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 N -0.26 -5.65 12.44 33.42 0.42 -5.23 16 19 C 0.08 1.53 6.73 -82.78 -0.56 0.98 16 20 C 0.07 1.11 5.77 -104.58 -0.60 0.51 16 21 C -0.15 -2.25 9.89 -39.11 -0.39 -2.64 16 22 C 0.09 1.27 11.17 -17.61 -0.20 1.08 16 23 N -0.49 -6.95 10.35 -13.35 -0.14 -7.09 16 24 C 0.09 1.20 11.17 -17.61 -0.20 1.00 16 25 C -0.15 -2.01 9.01 -39.11 -0.35 -2.36 16 26 C -0.18 -1.52 9.82 -26.73 -0.26 -1.79 16 27 C -0.18 -1.44 9.97 -26.73 -0.27 -1.71 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.43 7.90 -51.93 -0.41 0.02 16 30 H 0.08 0.96 6.70 -51.93 -0.35 0.61 16 31 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 32 H 0.03 0.26 7.90 -51.92 -0.41 -0.15 16 33 H 0.34 4.06 8.54 -39.29 -0.34 3.73 16 34 H 0.07 0.88 5.80 -51.93 -0.30 0.58 16 35 H 0.03 0.34 8.11 -51.93 -0.42 -0.08 16 36 H 0.16 2.35 8.06 -52.48 -0.42 1.92 16 37 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.06 1.32 8.07 -51.93 -0.42 0.90 16 39 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.13 2.00 8.06 -52.49 -0.42 1.57 16 41 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.13 1.59 6.26 -52.49 -0.33 1.27 16 44 H 0.09 0.74 8.05 -51.93 -0.42 0.32 16 45 H 0.09 0.75 8.05 -51.93 -0.42 0.33 16 46 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 395.20 15.07 5.96 5.96 Total: -1.00 -29.39 395.20 -10.14 -39.53 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -7.16 Total: 5.31 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -4.12 Total: -15.15 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: 0.20 Total: -51.69 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.39 -10.14 -39.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433300738.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.569 kcal (2) G-P(sol) polarization free energy of solvation -29.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds