Wall clock time and date at job start Tue Mar 31 2020 14:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 115.54603 * 2 1 4 4 N 1.46890 * 109.47283 * 34.33021 * 3 2 1 5 5 C 1.46908 * 111.00177 * 179.97438 * 4 3 2 6 6 C 1.50693 * 109.47219 * 184.75219 * 5 4 3 7 7 C 1.35073 * 126.07222 * 105.51378 * 6 5 4 8 8 N 1.35049 * 107.98703 * 180.25677 * 7 6 5 9 9 C 1.46505 * 125.93130 * 179.74337 * 8 7 6 10 10 C 1.50703 * 109.47181 * 124.99850 * 9 8 7 11 11 H 1.08003 * 119.99771 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00023 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99919 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 119.99996 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46973 * 90.00406 * 14 12 10 16 16 H 1.48501 * 109.47140 * 210.00091 * 14 12 10 17 17 H 1.48502 * 109.47158 * 330.00375 * 14 12 10 18 18 N 1.40077 * 108.14193 * 359.76098 * 8 7 6 19 19 C 1.31653 * 108.09968 * 0.02562 * 18 8 7 20 20 C 1.48365 * 126.03747 * 179.97438 * 19 18 8 21 21 C 1.39777 * 120.90238 * 317.69143 * 20 19 18 22 22 C 1.37965 * 119.01799 * 180.02562 * 21 20 19 23 23 N 1.31931 * 120.88151 * 0.02562 * 22 21 20 24 24 C 1.31939 * 122.00362 * 0.02562 * 23 22 21 25 25 C 1.37953 * 120.88371 * 359.97438 * 24 23 22 26 26 C 1.52997 * 117.52337 * 145.70189 * 2 1 3 27 27 C 1.52997 * 60.00210 * 107.48044 * 26 2 1 28 28 H 1.09003 * 109.47497 * 85.58493 * 1 2 3 29 29 H 1.09003 * 109.46735 * 205.58182 * 1 2 3 30 30 H 1.08998 * 109.47353 * 325.58084 * 1 2 3 31 31 H 1.09007 * 109.47073 * 274.32742 * 3 2 1 32 32 H 1.09009 * 109.46810 * 154.33519 * 3 2 1 33 33 H 1.00908 * 111.00125 * 56.04771 * 4 3 2 34 34 H 1.08998 * 109.46573 * 64.75583 * 5 4 3 35 35 H 1.08998 * 109.46906 * 304.75730 * 5 4 3 36 36 H 1.08003 * 126.00932 * 0.02562 * 7 6 5 37 37 H 1.09000 * 109.47175 * 245.00011 * 9 8 7 38 38 H 1.08999 * 109.46911 * 4.99745 * 9 8 7 39 39 H 0.96998 * 119.99837 * 179.97438 * 13 12 10 40 40 H 1.07991 * 120.49263 * 0.02562 * 21 20 19 41 41 H 1.07999 * 119.55838 * 179.97438 * 22 21 20 42 42 H 1.07999 * 119.55461 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.49118 * 180.02562 * 25 24 23 44 44 H 1.09000 * 117.50120 * 214.97427 * 26 2 1 45 45 H 1.09004 * 117.49334 * 359.97438 * 26 2 1 46 46 H 1.08992 * 117.50162 * 252.51490 * 27 26 2 47 47 H 1.09006 * 117.49934 * 107.48668 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1898 1.3805 0.0000 4 7 1.3691 2.3154 0.7810 5 6 1.9735 3.6542 0.8036 6 6 1.1691 4.5534 1.7066 7 6 1.5261 4.9643 2.9428 8 7 0.5381 5.7501 3.4226 9 6 0.5183 6.4014 4.7347 10 6 0.3052 7.8827 4.5571 11 1 0.1959 8.2975 3.5659 12 6 0.2497 8.7083 5.6600 13 7 0.3832 8.2032 6.8669 14 14 -0.0137 10.5444 5.4398 15 1 -1.4688 10.8410 5.4541 16 1 0.6515 11.2763 6.5476 17 1 0.5667 10.9757 4.1427 18 7 -0.4646 5.8340 2.4481 19 6 -0.0878 5.1164 1.4106 20 6 -0.8539 4.9295 0.1539 21 6 -2.2337 4.7074 0.1806 22 6 -2.9075 4.5381 -1.0113 23 7 -2.2668 4.5833 -2.1637 24 6 -0.9654 4.7896 -2.2326 25 6 -0.2153 4.9687 -1.0888 26 6 2.2370 -1.1209 0.7646 27 6 2.2364 -1.1207 -0.7654 28 1 -0.3634 0.0791 -1.0246 29 1 -0.3633 -0.9270 0.4438 30 1 -0.3634 0.8477 0.5809 31 1 2.2765 1.7417 -1.0248 32 1 3.1822 1.3088 0.4451 33 1 1.2201 1.9705 1.7175 34 1 1.9817 4.0661 -0.2055 35 1 2.9955 3.5852 1.1763 36 1 2.4394 4.7065 3.4585 37 1 -0.2925 5.9869 5.3339 38 1 1.4684 6.2290 5.2403 39 1 0.3445 8.7841 7.6427 40 1 -2.7644 4.6688 1.1203 41 1 -3.9736 4.3656 -1.0008 42 1 -0.4810 4.8187 -3.1974 43 1 0.8495 5.1376 -1.1526 44 1 3.1721 -0.8749 1.2676 45 1 1.6120 -1.8584 1.2682 46 1 1.6112 -1.8582 -1.2686 47 1 3.1713 -0.8745 -1.2690 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000433300738.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:19 Heat of formation + Delta-G solvation = 115.062831 kcal Electronic energy + Delta-G solvation = -26987.263374 eV Core-core repulsion = 23364.429904 eV Total energy + Delta-G solvation = -3622.833470 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.17087 -40.64180 -39.36091 -36.52767 -35.59669 -34.42374 -32.48738 -32.17279 -31.45200 -29.51652 -28.97810 -27.07914 -25.78144 -24.76894 -24.20087 -23.47363 -23.17010 -21.49402 -20.87651 -19.83477 -18.69578 -18.08691 -17.22519 -16.98425 -16.76508 -16.57377 -16.20064 -15.96534 -15.75139 -15.51495 -15.03335 -14.82709 -14.60494 -14.57031 -14.24986 -14.08138 -13.84276 -13.70095 -13.61314 -13.26239 -13.03368 -12.92484 -12.81607 -12.68567 -12.42858 -12.24531 -12.22212 -11.99035 -11.77952 -11.51668 -11.03129 -10.89781 -10.75328 -10.46238 -10.40564 -9.99954 -9.92578 -9.29768 -9.11081 -8.38171 -6.51910 0.12165 0.31797 1.16082 1.34426 1.36287 1.46683 1.77932 1.89466 2.31212 2.88249 2.94189 3.01862 3.38060 3.52176 3.66896 3.84979 3.90214 4.03407 4.08509 4.12673 4.21678 4.25783 4.28125 4.29151 4.38373 4.58139 4.67888 4.72292 4.78897 4.82244 4.85478 4.89039 4.96003 5.01805 5.04123 5.08476 5.09969 5.15796 5.20622 5.30187 5.31208 5.46686 5.54387 5.55744 5.71646 5.81594 5.83114 6.17774 6.27673 6.52147 6.59516 6.94124 7.09202 7.18498 8.69828 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011829 B = 0.003252 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.435418 B = 8608.829899 C =10309.956536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.131 4.131 3 C 0.101 3.899 4 N -0.681 5.681 5 C 0.150 3.850 6 C -0.232 4.232 7 C 0.050 3.950 8 N -0.345 5.345 9 C 0.272 3.728 10 C -0.548 4.548 11 H 0.050 0.950 12 C 0.021 3.979 13 N -0.919 5.919 14 Si 0.968 3.032 15 H -0.274 1.274 16 H -0.270 1.270 17 H -0.272 1.272 18 N -0.314 5.314 19 C 0.090 3.910 20 C 0.046 3.954 21 C -0.165 4.165 22 C 0.098 3.902 23 N -0.504 5.504 24 C 0.100 3.900 25 C -0.144 4.144 26 C -0.180 4.180 27 C -0.167 4.167 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.035 0.965 33 H 0.338 0.662 34 H 0.084 0.916 35 H 0.047 0.953 36 H 0.194 0.806 37 H 0.019 0.981 38 H 0.057 0.943 39 H 0.273 0.727 40 H 0.123 0.877 41 H 0.177 0.823 42 H 0.186 0.814 43 H 0.149 0.851 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.097 0.903 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.676 -15.818 -15.863 22.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.131 4.131 3 C -0.027 4.027 4 N -0.312 5.312 5 C 0.021 3.979 6 C -0.245 4.245 7 C -0.098 4.098 8 N -0.125 5.125 9 C 0.153 3.847 10 C -0.586 4.586 11 H 0.068 0.932 12 C -0.180 4.180 13 N -0.558 5.558 14 Si 0.793 3.207 15 H -0.200 1.200 16 H -0.195 1.195 17 H -0.197 1.197 18 N -0.138 5.138 19 C -0.074 4.074 20 C 0.036 3.964 21 C -0.186 4.186 22 C -0.058 4.058 23 N -0.214 5.214 24 C -0.057 4.057 25 C -0.165 4.165 26 C -0.217 4.217 27 C -0.205 4.205 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.053 0.947 33 H 0.156 0.844 34 H 0.102 0.898 35 H 0.065 0.935 36 H 0.211 0.789 37 H 0.037 0.963 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.141 0.859 41 H 0.194 0.806 42 H 0.203 0.797 43 H 0.166 0.834 44 H 0.113 0.887 45 H 0.111 0.889 46 H 0.115 0.885 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.901 -14.902 -16.266 22.250 hybrid contribution 1.520 0.511 1.924 2.505 sum 4.421 -14.390 -14.343 20.793 Atomic orbital electron populations 1.21156 0.92140 1.01468 1.01418 1.21488 0.95094 0.90496 1.06035 1.21407 0.93162 0.89592 0.98581 1.60511 1.49410 1.01679 1.19614 1.20089 0.93379 0.86841 0.97563 1.19978 0.97541 1.09959 0.96974 1.22877 0.95718 0.95264 0.95924 1.49099 1.13242 1.35969 1.14232 1.19295 0.98197 0.92196 0.74977 1.21371 1.51727 0.92168 0.93350 0.93155 1.25702 0.94003 1.03908 0.94388 1.69983 1.49507 1.37761 0.98527 0.85395 0.78569 0.78677 0.78095 1.19990 1.19473 1.19699 1.77612 1.14114 1.23490 0.98630 1.20771 0.95184 0.97960 0.93466 1.18202 0.92525 0.95488 0.90196 1.22241 0.94127 1.01676 1.00532 1.22901 1.01156 0.95115 0.86630 1.67680 1.11130 1.13240 1.29373 1.23072 0.89250 0.94255 0.99096 1.22225 1.02114 1.00766 0.91375 1.23217 1.02392 1.01292 0.94778 1.23060 1.02541 1.00693 0.94188 0.93139 0.93167 0.91863 0.90563 0.94652 0.84433 0.89796 0.93505 0.78913 0.96277 0.92501 0.91779 0.85851 0.80587 0.79679 0.83378 0.88711 0.88913 0.88454 0.88069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.01 9.73 71.98 0.70 -1.30 16 2 C -0.13 -2.18 2.50 -52.18 -0.13 -2.31 16 3 C 0.10 1.73 5.82 86.31 0.50 2.23 16 4 N -0.68 -14.36 5.05 -517.92 -2.61 -16.97 16 5 C 0.15 3.38 5.70 85.55 0.49 3.87 16 6 C -0.23 -7.29 5.55 -19.95 -0.11 -7.40 16 7 C 0.05 1.76 11.32 83.47 0.94 2.71 16 8 N -0.35 -15.46 3.67 -351.90 -1.29 -16.75 16 9 C 0.27 13.85 6.26 85.63 0.54 14.38 16 10 C -0.55 -30.73 9.23 25.60 0.24 -30.49 16 11 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 12 C 0.02 1.14 5.46 84.65 0.46 1.60 16 13 N -0.92 -51.75 13.29 21.45 0.28 -51.46 16 14 Si 0.97 43.62 29.54 68.60 2.03 45.64 16 15 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 16 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 17 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 18 N -0.31 -14.34 12.44 -48.17 -0.60 -14.94 16 19 C 0.09 3.32 6.73 42.51 0.29 3.61 16 20 C 0.05 1.45 5.77 -19.84 -0.11 1.33 16 21 C -0.16 -4.97 9.89 22.58 0.22 -4.75 16 22 C 0.10 2.53 11.17 84.61 0.95 3.47 16 23 N -0.50 -13.13 10.35 -196.14 -2.03 -15.16 16 24 C 0.10 2.26 11.17 84.61 0.95 3.20 16 25 C -0.14 -3.63 9.01 22.57 0.20 -3.42 16 26 C -0.18 -2.67 9.82 30.59 0.30 -2.37 16 27 C -0.17 -2.31 9.97 30.59 0.31 -2.01 16 28 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.05 0.89 7.90 -2.39 -0.02 0.87 16 30 H 0.06 1.45 6.70 -2.39 -0.02 1.44 16 31 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.04 0.56 7.90 -2.38 -0.02 0.54 16 33 H 0.34 7.67 8.54 -89.69 -0.77 6.90 16 34 H 0.08 1.75 5.80 -2.39 -0.01 1.73 16 35 H 0.05 0.92 8.11 -2.39 -0.02 0.90 16 36 H 0.19 5.32 8.06 -2.91 -0.02 5.30 16 37 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.06 2.82 8.07 -2.39 -0.02 2.80 16 39 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 40 H 0.12 3.89 8.06 -2.92 -0.02 3.87 16 41 H 0.18 3.48 8.06 -2.91 -0.02 3.46 16 42 H 0.19 2.82 8.06 -2.91 -0.02 2.80 16 43 H 0.15 3.18 6.26 -2.91 -0.02 3.16 16 44 H 0.09 1.33 8.05 -2.39 -0.02 1.31 16 45 H 0.09 1.36 8.05 -2.39 -0.02 1.34 16 46 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 Total: -1.00 -65.10 395.20 2.71 -62.39 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.21 Total: 24.89 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: 6.72 Total: -17.65 kcal Atomic # 7 Polarization: -109.03 SS G_CDS: -6.25 Total: -115.27 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -65.10 2.71 -62.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433300738.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.457 kcal (2) G-P(sol) polarization free energy of solvation -65.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds