Wall clock time and date at job start Tue Mar 31 2020 15:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 120.00037 * 2 1 4 4 C 1.50701 * 119.99954 * 180.02562 * 2 1 3 5 5 N 1.46901 * 109.47281 * 94.99672 * 4 2 1 6 6 C 1.46902 * 110.99732 * 66.04829 * 5 4 2 7 7 C 1.46901 * 111.00035 * 190.00126 * 5 4 2 8 8 C 1.50697 * 109.47370 * 163.97720 * 7 5 4 9 9 C 1.35070 * 126.07214 * 104.88720 * 8 7 5 10 10 N 1.35048 * 107.98228 * 179.97438 * 9 8 7 11 11 C 1.46510 * 125.92877 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.47012 * 125.04943 * 11 10 9 13 13 H 1.07996 * 120.00135 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99593 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00368 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99828 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47307 * 59.99502 * 16 14 12 18 18 H 1.48494 * 109.47368 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46902 * 299.99687 * 16 14 12 20 20 N 1.40070 * 108.14623 * 0.02562 * 10 9 8 21 21 C 1.31650 * 108.10137 * 0.02562 * 20 10 9 22 22 C 1.48364 * 126.04371 * 179.97438 * 21 20 10 23 23 C 1.39764 * 120.90865 * 136.23893 * 22 21 20 24 24 C 1.37972 * 119.02315 * 179.75249 * 23 22 21 25 25 N 1.31930 * 120.87595 * 0.53598 * 24 23 22 26 26 C 1.31931 * 122.00759 * 359.73429 * 25 24 23 27 27 C 1.37963 * 120.88231 * 359.97438 * 26 25 24 28 28 H 1.07999 * 120.00384 * 179.97438 * 1 2 3 29 29 H 1.08004 * 119.99764 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47244 * 269.99873 * 3 2 1 31 31 H 1.09003 * 109.47313 * 30.00189 * 3 2 1 32 32 H 1.09002 * 109.47088 * 150.00210 * 3 2 1 33 33 H 1.09002 * 109.46762 * 334.99630 * 4 2 1 34 34 H 1.08996 * 109.47265 * 215.00317 * 4 2 1 35 35 H 1.08996 * 109.46899 * 176.13499 * 6 5 4 36 36 H 1.09002 * 109.46938 * 296.13270 * 6 5 4 37 37 H 1.08998 * 109.47198 * 56.13439 * 6 5 4 38 38 H 1.09000 * 109.46988 * 43.97769 * 7 5 4 39 39 H 1.08997 * 109.46871 * 283.98116 * 7 5 4 40 40 H 1.07999 * 126.00830 * 359.97161 * 9 8 7 41 41 H 1.08996 * 109.46780 * 245.04923 * 11 10 9 42 42 H 1.08994 * 109.46823 * 5.04724 * 11 10 9 43 43 H 0.96996 * 120.00154 * 180.02562 * 15 14 12 44 44 H 1.08006 * 120.49066 * 0.02562 * 23 22 21 45 45 H 1.07998 * 119.55738 * 180.27163 * 24 23 22 46 46 H 1.07999 * 119.56234 * 179.97438 * 26 25 24 47 47 H 1.08000 * 120.49354 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4128 -1.6683 -1.3805 6 6 3.3708 -0.7114 -1.9502 7 6 2.9352 -3.0396 -1.4478 8 6 2.9117 -3.5166 -2.8771 9 6 3.9813 -3.6364 -3.6932 10 7 3.5457 -4.0940 -4.8868 11 6 4.3802 -4.3649 -6.0601 12 6 4.1596 -5.7841 -6.5166 13 1 3.4667 -6.4204 -5.9862 14 6 4.8422 -6.2700 -7.6115 15 7 5.6856 -5.4950 -8.2578 16 14 4.5682 -8.0289 -8.1779 17 1 3.1388 -8.2174 -8.5336 18 1 5.4141 -8.3036 -9.3670 19 1 4.9334 -8.9639 -7.0834 20 7 2.1575 -4.2634 -4.8089 21 6 1.7703 -3.9159 -3.5996 22 6 0.3779 -3.9412 -3.0878 23 6 0.0900 -4.4401 -1.8144 24 6 -1.2181 -4.4404 -1.3755 25 7 -2.1902 -3.9881 -2.1443 26 6 -1.9619 -3.5140 -3.3541 27 6 -0.6824 -3.4718 -3.8684 28 1 -0.5401 -0.9353 -0.0004 29 1 -0.5400 0.9354 0.0004 30 1 2.2452 1.6197 -1.0276 31 1 1.4744 2.0647 0.5139 32 1 3.0159 1.1747 0.5138 33 1 1.4385 -2.0856 0.4335 34 1 2.9741 -1.1992 0.5889 35 1 3.6648 -1.0412 -2.9466 36 1 2.9064 0.2725 -2.0154 37 1 4.2521 -0.6556 -1.3112 38 1 2.3154 -3.6949 -0.8358 39 1 3.9596 -3.0568 -1.0757 40 1 5.0048 -3.4066 -3.4363 41 1 4.1114 -3.6789 -6.8633 42 1 5.4294 -4.2260 -5.7996 43 1 6.1655 -5.8368 -9.0282 44 1 0.8804 -4.8158 -1.1814 45 1 -1.4497 -4.8198 -0.3913 46 1 -2.7877 -3.1542 -3.9499 47 1 -0.5027 -3.0820 -4.8594 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000434985361.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:17 Heat of formation + Delta-G solvation = 133.428555 kcal Electronic energy + Delta-G solvation = -27457.731363 eV Core-core repulsion = 23835.694290 eV Total energy + Delta-G solvation = -3622.037073 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.77939 -39.51519 -38.06221 -34.81854 -33.92938 -32.88027 -31.14182 -30.92805 -30.11583 -28.21049 -27.62345 -26.66602 -25.70018 -24.20857 -23.20456 -22.58057 -21.65904 -20.06889 -19.37785 -18.50122 -16.74540 -16.56852 -15.99137 -15.74908 -15.63519 -15.52797 -15.22957 -14.95190 -14.38087 -14.14899 -13.84550 -13.66288 -13.52888 -13.45248 -13.16736 -13.12869 -12.65887 -12.38804 -12.25934 -12.02200 -11.83450 -11.72243 -11.58178 -11.40554 -11.14481 -11.11402 -10.95357 -10.83972 -10.32373 -10.07361 -9.96269 -9.43119 -9.31649 -9.18461 -8.95246 -8.70295 -8.44326 -8.21214 -7.70214 -6.31460 -4.37083 1.30989 1.36991 2.12148 2.63752 3.18355 3.21804 3.25414 3.28960 3.40604 4.10240 4.25059 4.28864 4.61025 4.70061 4.78485 4.84449 5.02562 5.04773 5.16192 5.21644 5.27429 5.32062 5.37536 5.39735 5.46054 5.50281 5.56583 5.64327 5.67988 5.71152 5.81427 5.84400 5.89734 5.95620 6.10153 6.13682 6.18448 6.43979 6.53428 6.53959 6.80097 6.83521 6.88153 6.94273 7.11303 7.15493 7.23441 7.61298 7.77906 7.87653 8.14340 8.43559 8.70947 9.29279 10.77444 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012857 B = 0.003500 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.256816 B = 7998.023819 C = 9559.607375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.123 4.123 3 C -0.119 4.119 4 C 0.090 3.910 5 N -0.527 5.527 6 C 0.024 3.976 7 C 0.138 3.862 8 C -0.233 4.233 9 C 0.053 3.947 10 N -0.318 5.318 11 C 0.257 3.743 12 C -0.532 4.532 13 H 0.069 0.931 14 C 0.064 3.936 15 N -0.894 5.894 16 Si 0.908 3.092 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.275 1.275 20 N -0.259 5.259 21 C 0.083 3.917 22 C 0.073 3.927 23 C -0.154 4.154 24 C 0.094 3.906 25 N -0.494 5.494 26 C 0.096 3.904 27 C -0.150 4.150 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.035 0.965 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.020 0.980 38 H 0.075 0.925 39 H 0.037 0.963 40 H 0.164 0.836 41 H 0.047 0.953 42 H 0.055 0.945 43 H 0.269 0.731 44 H 0.132 0.868 45 H 0.151 0.849 46 H 0.152 0.848 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.685 9.770 16.761 20.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.124 4.124 3 C -0.176 4.176 4 C -0.037 4.037 5 N -0.251 5.251 6 C -0.124 4.124 7 C 0.010 3.990 8 C -0.246 4.246 9 C -0.097 4.097 10 N -0.097 5.097 11 C 0.139 3.861 12 C -0.570 4.570 13 H 0.087 0.913 14 C -0.139 4.139 15 N -0.532 5.532 16 Si 0.735 3.265 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.200 1.200 20 N -0.083 5.083 21 C -0.080 4.080 22 C 0.063 3.937 23 C -0.175 4.175 24 C -0.063 4.063 25 N -0.203 5.203 26 C -0.060 4.060 27 C -0.171 4.171 28 H 0.116 0.884 29 H 0.111 0.889 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.053 0.947 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.039 0.961 38 H 0.093 0.907 39 H 0.055 0.945 40 H 0.181 0.819 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.149 0.851 45 H 0.168 0.832 46 H 0.169 0.831 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.042 9.302 15.304 19.632 hybrid contribution 2.072 -0.588 0.332 2.179 sum -5.971 8.714 15.636 18.870 Atomic orbital electron populations 1.23637 0.95161 1.01651 1.00775 1.21550 0.95388 0.95057 1.00393 1.20960 0.99849 0.94723 1.02021 1.21156 0.98109 0.94785 0.89641 1.62025 1.43144 1.02128 1.17767 1.22472 0.93339 0.96577 1.00025 1.20279 0.97694 0.88505 0.92536 1.19498 0.91451 1.16060 0.97605 1.22226 0.99350 1.01009 0.87083 1.49404 1.04637 1.44431 1.11265 1.19782 0.88050 0.98490 0.79745 1.21186 1.25910 0.95989 1.13921 0.91313 1.24930 0.94539 0.98719 0.95711 1.69898 1.26602 1.36474 1.20276 0.86382 0.78553 0.83461 0.78125 1.19817 1.20974 1.19991 1.77687 0.91590 1.21519 1.17537 1.20226 0.92269 1.02992 0.92495 1.18053 0.89687 0.93288 0.92676 1.22062 0.98117 1.01186 0.96131 1.22511 0.88390 0.96378 0.99010 1.67574 1.36546 1.10491 1.05735 1.22560 0.95660 0.95891 0.91930 1.22215 0.93084 1.00654 1.01101 0.88425 0.88852 0.91279 0.92177 0.92275 0.90500 0.94714 0.91214 0.91430 0.96135 0.90671 0.94524 0.81897 0.93540 0.92672 0.92179 0.85055 0.83161 0.83050 0.84803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 13.89 29.01 0.40 -1.36 16 2 C -0.12 -1.24 5.10 -101.07 -0.52 -1.75 16 3 C -0.12 -1.00 9.03 36.00 0.32 -0.68 16 4 C 0.09 0.94 5.14 -4.97 -0.03 0.91 16 5 N -0.53 -6.48 4.70 -245.83 -1.15 -7.64 16 6 C 0.02 0.28 8.88 60.07 0.53 0.82 16 7 C 0.14 1.77 5.00 -4.98 -0.02 1.74 16 8 C -0.23 -3.84 4.83 -104.76 -0.51 -4.34 16 9 C 0.05 0.95 10.82 -17.26 -0.19 0.76 16 10 N -0.32 -6.93 3.67 -62.58 -0.23 -7.16 16 11 C 0.26 6.28 6.26 -5.19 -0.03 6.25 16 12 C -0.53 -14.47 9.23 -34.44 -0.32 -14.79 16 13 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -24.88 13.29 55.43 0.74 -24.14 16 16 Si 0.91 21.14 29.54 -169.99 -5.02 16.12 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 N -0.26 -5.74 12.44 33.42 0.42 -5.32 16 21 C 0.08 1.55 6.72 -82.78 -0.56 0.99 16 22 C 0.07 1.18 5.76 -104.58 -0.60 0.58 16 23 C -0.15 -2.08 9.00 -39.11 -0.35 -2.43 16 24 C 0.09 1.17 11.17 -17.61 -0.20 0.98 16 25 N -0.49 -6.91 10.35 -13.35 -0.14 -7.05 16 26 C 0.10 1.30 11.17 -17.61 -0.20 1.10 16 27 C -0.15 -2.28 9.89 -39.11 -0.39 -2.67 16 28 H 0.10 1.04 7.99 -52.49 -0.42 0.62 16 29 H 0.09 0.84 8.04 -52.48 -0.42 0.42 16 30 H 0.07 0.60 6.51 -51.93 -0.34 0.26 16 31 H 0.06 0.45 8.06 -51.93 -0.42 0.03 16 32 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 33 H 0.08 0.76 7.71 -51.93 -0.40 0.36 16 34 H 0.03 0.33 8.04 -51.93 -0.42 -0.08 16 35 H 0.07 0.95 6.91 -51.93 -0.36 0.59 16 36 H 0.07 0.76 5.30 -51.93 -0.27 0.48 16 37 H 0.02 0.22 8.10 -51.93 -0.42 -0.21 16 38 H 0.08 0.89 5.52 -51.93 -0.29 0.60 16 39 H 0.04 0.43 8.04 -51.93 -0.42 0.02 16 40 H 0.16 2.40 8.06 -52.49 -0.42 1.98 16 41 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.06 1.33 8.07 -51.93 -0.42 0.91 16 43 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.13 1.57 6.38 -52.48 -0.33 1.23 16 45 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 46 H 0.15 1.63 8.06 -52.49 -0.42 1.20 16 47 H 0.13 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 391.88 15.07 5.91 5.91 Total: -1.00 -30.13 391.88 -9.23 -39.36 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -7.01 Total: 2.18 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -2.74 Total: -12.25 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.37 Total: -51.31 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.13 -9.23 -39.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434985361.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.788 kcal (2) G-P(sol) polarization free energy of solvation -30.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds