Wall clock time and date at job start Tue Mar 31 2020 15:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 120.00037 * 2 1 4 4 C 1.50701 * 119.99954 * 180.02562 * 2 1 3 5 5 N 1.46901 * 109.47281 * 94.99672 * 4 2 1 6 6 C 1.46902 * 110.99732 * 66.04829 * 5 4 2 7 7 C 1.46901 * 111.00035 * 190.00126 * 5 4 2 8 8 C 1.50697 * 109.47370 * 163.97720 * 7 5 4 9 9 C 1.35070 * 126.07214 * 104.88720 * 8 7 5 10 10 N 1.35048 * 107.98228 * 179.97438 * 9 8 7 11 11 C 1.46510 * 125.92877 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.47012 * 125.04943 * 11 10 9 13 13 H 1.07996 * 120.00135 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99593 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00368 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99828 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47307 * 59.99502 * 16 14 12 18 18 H 1.48494 * 109.47368 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46902 * 299.99687 * 16 14 12 20 20 N 1.40070 * 108.14623 * 0.02562 * 10 9 8 21 21 C 1.31650 * 108.10137 * 0.02562 * 20 10 9 22 22 C 1.48364 * 126.04371 * 179.97438 * 21 20 10 23 23 C 1.39764 * 120.90865 * 136.23893 * 22 21 20 24 24 C 1.37972 * 119.02315 * 179.75249 * 23 22 21 25 25 N 1.31930 * 120.87595 * 0.53598 * 24 23 22 26 26 C 1.31931 * 122.00759 * 359.73429 * 25 24 23 27 27 C 1.37963 * 120.88231 * 359.97438 * 26 25 24 28 28 H 1.07999 * 120.00384 * 179.97438 * 1 2 3 29 29 H 1.08004 * 119.99764 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47244 * 269.99873 * 3 2 1 31 31 H 1.09003 * 109.47313 * 30.00189 * 3 2 1 32 32 H 1.09002 * 109.47088 * 150.00210 * 3 2 1 33 33 H 1.09002 * 109.46762 * 334.99630 * 4 2 1 34 34 H 1.08996 * 109.47265 * 215.00317 * 4 2 1 35 35 H 1.08996 * 109.46899 * 176.13499 * 6 5 4 36 36 H 1.09002 * 109.46938 * 296.13270 * 6 5 4 37 37 H 1.08998 * 109.47198 * 56.13439 * 6 5 4 38 38 H 1.09000 * 109.46988 * 43.97769 * 7 5 4 39 39 H 1.08997 * 109.46871 * 283.98116 * 7 5 4 40 40 H 1.07999 * 126.00830 * 359.97161 * 9 8 7 41 41 H 1.08996 * 109.46780 * 245.04923 * 11 10 9 42 42 H 1.08994 * 109.46823 * 5.04724 * 11 10 9 43 43 H 0.96996 * 120.00154 * 180.02562 * 15 14 12 44 44 H 1.08006 * 120.49066 * 0.02562 * 23 22 21 45 45 H 1.07998 * 119.55738 * 180.27163 * 24 23 22 46 46 H 1.07999 * 119.56234 * 179.97438 * 26 25 24 47 47 H 1.08000 * 120.49354 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4128 -1.6683 -1.3805 6 6 3.3708 -0.7114 -1.9502 7 6 2.9352 -3.0396 -1.4478 8 6 2.9117 -3.5166 -2.8771 9 6 3.9813 -3.6364 -3.6932 10 7 3.5457 -4.0940 -4.8868 11 6 4.3802 -4.3649 -6.0601 12 6 4.1596 -5.7841 -6.5166 13 1 3.4667 -6.4204 -5.9862 14 6 4.8422 -6.2700 -7.6115 15 7 5.6856 -5.4950 -8.2578 16 14 4.5682 -8.0289 -8.1779 17 1 3.1388 -8.2174 -8.5336 18 1 5.4141 -8.3036 -9.3670 19 1 4.9334 -8.9639 -7.0834 20 7 2.1575 -4.2634 -4.8089 21 6 1.7703 -3.9159 -3.5996 22 6 0.3779 -3.9412 -3.0878 23 6 0.0900 -4.4401 -1.8144 24 6 -1.2181 -4.4404 -1.3755 25 7 -2.1902 -3.9881 -2.1443 26 6 -1.9619 -3.5140 -3.3541 27 6 -0.6824 -3.4718 -3.8684 28 1 -0.5401 -0.9353 -0.0004 29 1 -0.5400 0.9354 0.0004 30 1 2.2452 1.6197 -1.0276 31 1 1.4744 2.0647 0.5139 32 1 3.0159 1.1747 0.5138 33 1 1.4385 -2.0856 0.4335 34 1 2.9741 -1.1992 0.5889 35 1 3.6648 -1.0412 -2.9466 36 1 2.9064 0.2725 -2.0154 37 1 4.2521 -0.6556 -1.3112 38 1 2.3154 -3.6949 -0.8358 39 1 3.9596 -3.0568 -1.0757 40 1 5.0048 -3.4066 -3.4363 41 1 4.1114 -3.6789 -6.8633 42 1 5.4294 -4.2260 -5.7996 43 1 6.1655 -5.8368 -9.0282 44 1 0.8804 -4.8158 -1.1814 45 1 -1.4497 -4.8198 -0.3913 46 1 -2.7877 -3.1542 -3.9499 47 1 -0.5027 -3.0820 -4.8594 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000434985361.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:16 Heat of formation + Delta-G solvation = 116.065465 kcal Electronic energy + Delta-G solvation = -27458.484283 eV Core-core repulsion = 23835.694290 eV Total energy + Delta-G solvation = -3622.789993 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.19034 -40.65131 -38.96747 -36.05195 -35.33940 -34.43625 -32.49121 -32.19091 -31.43425 -29.33833 -28.92095 -27.46285 -26.96367 -25.77287 -24.28274 -23.97736 -22.80999 -21.49645 -20.70683 -19.29462 -18.68419 -17.95310 -17.18918 -17.03702 -16.74225 -16.50981 -16.36052 -16.13409 -15.77776 -15.60147 -14.90241 -14.80594 -14.63787 -14.49609 -14.28609 -14.18667 -13.90459 -13.87988 -13.59308 -13.45736 -13.01532 -12.84940 -12.74040 -12.64607 -12.48309 -12.33310 -12.25163 -12.13808 -11.83637 -11.71302 -11.50900 -10.88795 -10.75059 -10.41250 -10.01287 -9.97622 -9.89677 -9.23673 -9.06129 -8.37746 -6.51820 0.12074 0.30255 1.14639 1.34591 1.36555 1.38037 1.45845 1.80212 1.91308 2.31388 2.94388 3.00408 3.32181 3.50786 3.65918 3.86678 3.94692 4.05958 4.12482 4.17518 4.22444 4.26375 4.32762 4.47018 4.51980 4.59989 4.66023 4.70243 4.74749 4.83268 4.85714 4.88773 4.93196 4.95378 5.01033 5.03752 5.08554 5.09802 5.18629 5.26881 5.46149 5.54152 5.71899 5.77813 5.81160 5.82831 6.04560 6.17789 6.25307 6.28622 6.59455 6.94987 7.08140 7.18531 8.70022 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012857 B = 0.003500 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.256816 B = 7998.023819 C = 9559.607375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.130 4.130 3 C -0.117 4.117 4 C 0.092 3.908 5 N -0.540 5.540 6 C 0.028 3.972 7 C 0.143 3.857 8 C -0.221 4.221 9 C 0.048 3.952 10 N -0.345 5.345 11 C 0.273 3.727 12 C -0.549 4.549 13 H 0.051 0.949 14 C 0.021 3.979 15 N -0.919 5.919 16 Si 0.968 3.032 17 H -0.276 1.276 18 H -0.272 1.272 19 H -0.268 1.268 20 N -0.315 5.315 21 C 0.089 3.911 22 C 0.047 3.953 23 C -0.149 4.149 24 C 0.101 3.899 25 N -0.503 5.503 26 C 0.099 3.901 27 C -0.166 4.166 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.046 0.954 36 H 0.071 0.929 37 H 0.036 0.964 38 H 0.090 0.910 39 H 0.053 0.947 40 H 0.191 0.809 41 H 0.018 0.982 42 H 0.056 0.944 43 H 0.273 0.727 44 H 0.150 0.850 45 H 0.188 0.812 46 H 0.177 0.823 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.293 9.593 19.391 22.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.130 4.130 3 C -0.174 4.174 4 C -0.035 4.035 5 N -0.264 5.264 6 C -0.120 4.120 7 C 0.015 3.985 8 C -0.233 4.233 9 C -0.100 4.100 10 N -0.125 5.125 11 C 0.154 3.846 12 C -0.587 4.587 13 H 0.069 0.931 14 C -0.180 4.180 15 N -0.558 5.558 16 Si 0.792 3.208 17 H -0.201 1.201 18 H -0.196 1.196 19 H -0.192 1.192 20 N -0.139 5.139 21 C -0.075 4.075 22 C 0.037 3.963 23 C -0.169 4.169 24 C -0.055 4.055 25 N -0.213 5.213 26 C -0.056 4.056 27 C -0.187 4.187 28 H 0.109 0.891 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.054 0.946 38 H 0.108 0.892 39 H 0.071 0.929 40 H 0.208 0.792 41 H 0.036 0.964 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.167 0.833 45 H 0.205 0.795 46 H 0.194 0.806 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.651 9.144 17.958 21.930 hybrid contribution 2.156 -0.459 -0.372 2.235 sum -6.496 8.685 17.585 20.661 Atomic orbital electron populations 1.23709 0.95371 1.01787 1.00953 1.21709 0.95507 0.95608 1.00191 1.20957 1.00253 0.94217 1.01957 1.21190 0.98741 0.95121 0.88433 1.61937 1.43351 1.01780 1.19344 1.22418 0.93991 0.96573 0.99067 1.20301 0.99118 0.89139 0.89977 1.19907 0.90031 1.14315 0.99070 1.22808 1.01155 1.00134 0.85881 1.49076 1.04651 1.47046 1.11777 1.19276 0.88397 0.96526 0.80372 1.21345 1.25785 0.97166 1.14418 0.93100 1.25707 0.94140 1.02548 0.95584 1.69975 1.27118 1.38073 1.20634 0.85449 0.78272 0.78910 0.78126 1.20128 1.19638 1.19245 1.77601 0.91999 1.24266 1.20066 1.20764 0.94036 1.01044 0.91657 1.18216 0.88616 0.95250 0.94178 1.22245 0.99261 1.00426 0.95017 1.23096 0.87546 0.94819 1.00030 1.67683 1.37076 1.10686 1.05843 1.22885 0.95517 0.95136 0.92101 1.22232 0.93966 1.01671 1.00820 0.89112 0.88022 0.91742 0.91224 0.91465 0.89929 0.93506 0.93530 0.91024 0.94555 0.89216 0.92920 0.79234 0.96417 0.92595 0.91769 0.83284 0.79482 0.80641 0.86102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.29 13.89 67.78 0.94 -2.35 16 2 C -0.13 -2.31 5.10 -16.49 -0.08 -2.39 16 3 C -0.12 -1.72 9.03 71.23 0.64 -1.07 16 4 C 0.09 1.65 5.14 85.56 0.44 2.09 16 5 N -0.54 -12.20 4.70 -931.66 -4.38 -16.58 16 6 C 0.03 0.61 8.88 127.69 1.13 1.75 16 7 C 0.14 3.33 5.00 85.56 0.43 3.76 16 8 C -0.22 -7.15 4.83 -19.95 -0.10 -7.24 16 9 C 0.05 1.74 10.82 83.47 0.90 2.64 16 10 N -0.35 -15.72 3.67 -351.90 -1.29 -17.01 16 11 C 0.27 14.07 6.26 85.63 0.54 14.61 16 12 C -0.55 -31.00 9.23 25.60 0.24 -30.76 16 13 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 14 C 0.02 1.16 5.46 84.65 0.46 1.62 16 15 N -0.92 -52.08 13.29 21.45 0.28 -51.80 16 16 Si 0.97 43.76 29.54 68.60 2.03 45.78 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 18 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 20 N -0.32 -14.62 12.44 -48.17 -0.60 -15.22 16 21 C 0.09 3.34 6.72 42.51 0.29 3.63 16 22 C 0.05 1.51 5.76 -19.84 -0.11 1.40 16 23 C -0.15 -3.70 9.00 22.58 0.20 -3.49 16 24 C 0.10 2.24 11.17 84.61 0.95 3.18 16 25 N -0.50 -12.90 10.35 -196.14 -2.03 -14.93 16 26 C 0.10 2.58 11.17 84.61 0.95 3.52 16 27 C -0.17 -5.10 9.89 22.58 0.22 -4.87 16 28 H 0.09 1.77 7.99 -2.91 -0.02 1.74 16 29 H 0.10 1.64 8.04 -2.91 -0.02 1.62 16 30 H 0.06 1.01 6.51 -2.39 -0.02 1.00 16 31 H 0.07 0.88 8.06 -2.39 -0.02 0.86 16 32 H 0.07 0.87 8.09 -2.39 -0.02 0.85 16 33 H 0.08 1.38 7.71 -2.39 -0.02 1.36 16 34 H 0.05 0.74 8.04 -2.39 -0.02 0.72 16 35 H 0.05 1.24 6.91 -2.39 -0.02 1.22 16 36 H 0.07 1.51 5.30 -2.39 -0.01 1.50 16 37 H 0.04 0.68 8.10 -2.39 -0.02 0.66 16 38 H 0.09 1.84 5.52 -2.39 -0.01 1.83 16 39 H 0.05 1.08 8.04 -2.39 -0.02 1.06 16 40 H 0.19 5.48 8.06 -2.91 -0.02 5.46 16 41 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.06 2.81 8.07 -2.39 -0.02 2.79 16 43 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 44 H 0.15 3.11 6.38 -2.91 -0.02 3.09 16 45 H 0.19 2.68 8.06 -2.91 -0.02 2.66 16 46 H 0.18 3.52 8.06 -2.91 -0.02 3.49 16 47 H 0.12 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -66.98 391.88 3.00 -63.98 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 0.96 Total: 19.77 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: 8.03 Total: -13.99 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -8.01 Total: -115.54 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -66.98 3.00 -63.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434985361.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.047 kcal (2) G-P(sol) polarization free energy of solvation -66.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds