Wall clock time and date at job start Tue Mar 31 2020 14:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35804 * 117.00134 * 2 1 4 4 C 1.36675 * 120.22785 * 0.04339 * 3 2 1 5 5 C 1.39187 * 120.92110 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.46830 * 179.97438 * 5 4 3 7 7 N 1.46897 * 109.47507 * 269.97912 * 6 5 4 8 8 C 1.46906 * 110.99544 * 294.30380 * 7 6 5 9 9 C 1.53235 * 109.33827 * 172.74590 * 8 7 6 10 10 N 1.47083 * 108.52414 * 53.82453 * 9 8 7 11 11 C 1.36942 * 120.87958 * 128.83729 * 10 9 8 12 12 H 1.07996 * 120.00018 * 206.62854 * 11 10 9 13 13 C 1.38809 * 120.00037 * 26.62531 * 11 10 9 14 14 N 1.31621 * 120.00108 * 17.04584 * 13 11 10 15 15 Si 1.86799 * 120.00167 * 197.03830 * 13 11 10 16 16 H 1.48499 * 109.46720 * 90.00300 * 15 13 11 17 17 H 1.48501 * 109.47259 * 209.99991 * 15 13 11 18 18 H 1.48500 * 109.47048 * 330.00446 * 15 13 11 19 19 C 1.47079 * 118.23726 * 308.81951 * 10 9 8 20 20 C 1.46891 * 111.00386 * 170.00127 * 7 6 5 21 21 C 1.36166 * 121.06220 * 359.93264 * 5 4 3 22 22 C 1.40525 * 119.76851 * 0.02562 * 21 5 4 23 23 C 1.40559 * 121.26663 * 180.02562 * 22 21 5 24 24 C 1.36102 * 119.64873 * 179.97438 * 23 22 21 25 25 C 1.39360 * 120.97379 * 0.04727 * 24 23 22 26 26 C 1.36129 * 120.98152 * 359.97073 * 25 24 23 27 27 C 1.40412 * 119.66406 * 0.02562 * 26 25 24 28 28 H 1.09003 * 109.46842 * 60.00158 * 1 2 3 29 29 H 1.08997 * 109.47358 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47134 * 300.00277 * 1 2 3 31 31 H 1.08001 * 119.53644 * 359.97438 * 4 3 2 32 32 H 1.09004 * 109.47225 * 29.97826 * 6 5 4 33 33 H 1.09000 * 109.47450 * 149.97364 * 6 5 4 34 34 H 1.09004 * 109.48986 * 292.69919 * 8 7 6 35 35 H 1.08993 * 109.49684 * 52.78278 * 8 7 6 36 36 H 1.09003 * 109.62879 * 294.11725 * 9 8 7 37 37 H 1.09000 * 109.79162 * 173.63436 * 9 8 7 38 38 H 0.97003 * 120.00115 * 180.02562 * 14 13 11 39 39 H 1.09002 * 109.62788 * 291.46962 * 19 10 9 40 40 H 1.08998 * 109.78566 * 170.98795 * 19 10 9 41 41 H 1.09005 * 109.49524 * 307.21250 * 20 7 6 42 42 H 1.09003 * 109.49575 * 67.29136 * 20 7 6 43 43 H 1.07999 * 120.11833 * 180.02562 * 21 5 4 44 44 H 1.08004 * 120.17428 * 359.95538 * 23 22 21 45 45 H 1.07994 * 119.51228 * 180.02562 * 24 23 22 46 46 H 1.08001 * 119.50328 * 180.25771 * 25 24 23 47 47 H 1.08005 * 120.17222 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2100 0.0000 4 6 1.3058 2.3592 0.0009 5 6 1.9227 3.6069 0.0004 6 6 1.0751 4.8530 0.0008 7 7 0.7991 5.2581 -1.3840 8 6 2.0331 5.6663 -2.0688 9 6 1.7344 5.9060 -3.5525 10 7 0.6203 6.8606 -3.6566 11 6 0.7196 7.9729 -4.4493 12 1 0.1401 8.8543 -4.2179 13 6 1.5652 7.9675 -5.5500 14 7 2.0088 6.8266 -6.0336 15 14 2.0735 9.5796 -6.3453 16 1 3.3172 10.0771 -5.7045 17 1 2.3161 9.3619 -7.7941 18 1 0.9912 10.5811 -6.1695 19 6 -0.6033 6.5887 -2.8872 20 6 -0.2126 6.3221 -1.4297 21 6 3.2796 3.7198 0.0003 22 6 4.0760 2.5620 0.0003 23 6 5.4793 2.6418 0.0008 24 6 6.2187 1.4992 0.0012 25 6 5.6052 0.2479 0.0002 26 6 4.2488 0.1326 -0.0006 27 6 3.4530 1.2894 -0.0011 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.2275 2.2983 0.0012 32 1 0.1350 4.6528 0.5149 33 1 1.6067 5.6539 0.5146 34 1 2.4107 6.5854 -1.6207 35 1 2.7808 4.8794 -1.9708 36 1 1.4557 4.9649 -4.0267 37 1 2.6159 6.3169 -4.0447 38 1 2.6001 6.8228 -6.8026 39 1 -1.1067 5.7132 -3.2974 40 1 -1.2690 7.4503 -2.9361 41 1 -1.0934 6.0108 -0.8681 42 1 0.1964 7.2320 -0.9904 43 1 3.7423 4.6957 0.0003 44 1 5.9683 3.6049 0.0005 45 1 7.2968 1.5631 0.0020 46 1 6.2149 -0.6435 0.0048 47 1 3.7870 -0.8438 -0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449015916.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:45 Heat of formation + Delta-G solvation = 42.719841 kcal Electronic energy + Delta-G solvation = -27701.680109 eV Core-core repulsion = 24043.416861 eV Total energy + Delta-G solvation = -3658.263249 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.83050 -38.61928 -38.27735 -36.25785 -34.14695 -32.21993 -31.58999 -30.43426 -29.89590 -28.96476 -27.68826 -26.90958 -24.79883 -23.11377 -22.74149 -22.49012 -21.63592 -21.28348 -19.05442 -17.66083 -17.54438 -16.94885 -16.71073 -15.87094 -15.52102 -15.17805 -15.05104 -14.51062 -14.37667 -14.15276 -13.92572 -13.64688 -13.44635 -13.34436 -13.20182 -12.99909 -12.93364 -12.31139 -12.01597 -11.87318 -11.73457 -11.51100 -11.44624 -11.08827 -11.01177 -10.79547 -10.76553 -10.70461 -10.41104 -10.25045 -10.02432 -9.71765 -9.59653 -9.48386 -8.57214 -8.47970 -7.82888 -7.48473 -6.64191 -5.75403 -3.16949 0.62301 0.99227 2.09645 2.98550 3.11130 3.39084 3.45761 3.47172 4.07214 4.50149 4.56706 4.66352 4.73771 4.87135 4.91326 4.99308 5.06469 5.11006 5.23975 5.32492 5.37468 5.41646 5.42983 5.47569 5.51546 5.62192 5.72691 5.93330 5.93667 5.97247 5.99965 6.05537 6.15963 6.22752 6.29524 6.35790 6.46736 6.48944 6.56812 6.64762 6.73277 6.77799 6.93947 6.94674 7.27568 7.31992 7.60864 7.69290 7.73703 7.84778 8.46018 9.23737 9.87243 10.45969 11.33208 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.014287 B = 0.003273 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.327540 B = 8551.708776 C = 9584.899749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.137 3.863 4 C -0.193 4.193 5 C -0.021 4.021 6 C 0.087 3.913 7 N -0.526 5.526 8 C 0.031 3.969 9 C 0.179 3.821 10 N -0.595 5.595 11 C -0.253 4.253 12 H 0.066 0.934 13 C 0.002 3.998 14 N -0.902 5.902 15 Si 0.902 3.098 16 H -0.288 1.288 17 H -0.291 1.291 18 H -0.279 1.279 19 C 0.150 3.850 20 C 0.045 3.955 21 C -0.140 4.140 22 C -0.015 4.015 23 C -0.113 4.113 24 C -0.109 4.109 25 C -0.135 4.135 26 C -0.084 4.084 27 C -0.071 4.071 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.129 0.871 32 H 0.076 0.924 33 H 0.038 0.962 34 H 0.023 0.977 35 H 0.067 0.933 36 H 0.025 0.975 37 H 0.088 0.912 38 H 0.254 0.746 39 H 0.024 0.976 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.028 0.972 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.178 -13.028 16.226 20.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.092 3.908 4 C -0.213 4.213 5 C -0.021 4.021 6 C -0.040 4.040 7 N -0.251 5.251 8 C -0.097 4.097 9 C 0.053 3.947 10 N -0.319 5.319 11 C -0.382 4.382 12 H 0.084 0.916 13 C -0.197 4.197 14 N -0.547 5.547 15 Si 0.732 3.268 16 H -0.215 1.215 17 H -0.217 1.217 18 H -0.205 1.205 19 C 0.023 3.977 20 C -0.085 4.085 21 C -0.159 4.159 22 C -0.015 4.015 23 C -0.131 4.131 24 C -0.127 4.127 25 C -0.153 4.153 26 C -0.102 4.102 27 C -0.072 4.072 28 H 0.079 0.921 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.147 0.853 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.042 0.958 35 H 0.085 0.915 36 H 0.043 0.957 37 H 0.106 0.894 38 H 0.064 0.936 39 H 0.042 0.958 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.046 0.954 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.139 -13.622 15.802 20.973 hybrid contribution 0.359 1.616 -0.114 1.660 sum 2.498 -12.006 15.689 19.913 Atomic orbital electron populations 1.23083 0.78089 1.03809 1.01843 1.85969 1.21557 1.26856 1.88436 1.18603 0.91164 0.84444 0.96621 1.20685 1.00177 0.91412 1.08982 1.19198 0.93413 0.94166 0.95353 1.21115 0.98115 0.93237 0.91551 1.61986 1.11363 1.39522 1.12226 1.23001 0.90442 0.97370 0.98935 1.20842 0.92721 0.92452 0.88637 1.44136 1.10283 1.25709 1.51747 1.19207 1.24533 0.90426 1.04057 0.91650 1.25021 1.01972 0.96566 0.96117 1.70038 1.36535 1.23613 1.24519 0.86293 0.78706 0.83437 0.78361 1.21512 1.21741 1.20484 1.20954 0.89917 0.98004 0.88847 1.22640 0.93998 0.91733 1.00083 1.20808 0.93129 0.97481 1.04449 1.17837 0.93557 0.91793 0.98338 1.20994 0.92259 0.98981 1.00860 1.20850 0.99940 0.92502 0.99397 1.20777 0.94713 0.97569 1.02248 1.20917 0.93661 0.97643 0.97982 1.17403 0.90018 0.93832 1.05900 0.92095 0.88301 0.92610 0.85343 0.90577 0.94378 0.95838 0.91501 0.95729 0.89409 0.93627 0.95779 0.92638 0.92077 0.95382 0.85614 0.85388 0.86099 0.86169 0.85397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -3.87 9.72 -19.13 -0.19 -4.05 16 3 C 0.14 1.90 6.67 -39.12 -0.26 1.64 16 4 C -0.19 -2.66 8.62 -39.79 -0.34 -3.01 16 5 C -0.02 -0.30 4.87 -105.01 -0.51 -0.81 16 6 C 0.09 1.28 5.10 -4.98 -0.03 1.25 16 7 N -0.53 -9.50 4.62 -235.77 -1.09 -10.59 16 8 C 0.03 0.63 5.30 -3.70 -0.02 0.62 16 9 C 0.18 4.47 5.42 -3.60 -0.02 4.45 16 10 N -0.60 -15.37 3.04 -172.01 -0.52 -15.90 16 11 C -0.25 -7.05 9.63 -15.06 -0.15 -7.20 16 12 H 0.07 1.79 7.88 -52.49 -0.41 1.37 16 13 C 0.00 0.05 4.93 -17.43 -0.09 -0.04 16 14 N -0.90 -26.65 11.15 55.49 0.62 -26.03 16 15 Si 0.90 21.91 29.59 -169.99 -5.03 16.88 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 C 0.15 3.22 6.69 -3.60 -0.02 3.20 16 20 C 0.04 0.80 5.62 -3.71 -0.02 0.78 16 21 C -0.14 -1.99 7.50 -39.47 -0.30 -2.29 16 22 C -0.02 -0.21 5.74 -106.84 -0.61 -0.83 16 23 C -0.11 -1.36 9.77 -39.47 -0.39 -1.74 16 24 C -0.11 -1.16 9.95 -39.93 -0.40 -1.56 16 25 C -0.13 -1.45 9.95 -39.92 -0.40 -1.84 16 26 C -0.08 -1.03 9.56 -39.52 -0.38 -1.41 16 27 C -0.07 -1.00 5.75 -106.73 -0.61 -1.61 16 28 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 29 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.42 7.65 -51.93 -0.40 0.03 16 31 H 0.13 1.57 6.21 -52.49 -0.33 1.24 16 32 H 0.08 0.98 7.90 -51.93 -0.41 0.57 16 33 H 0.04 0.54 8.05 -51.93 -0.42 0.12 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 1.28 5.64 -51.93 -0.29 0.99 16 36 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.09 2.41 6.11 -51.93 -0.32 2.10 16 38 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 41 H 0.06 0.92 7.99 -51.93 -0.41 0.51 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.13 1.69 7.89 -52.49 -0.41 1.27 16 44 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 45 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 46 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 47 H 0.13 1.40 7.62 -52.48 -0.40 1.00 16 LS Contribution 372.09 15.07 5.61 5.61 Total: -1.00 -31.83 372.09 -11.28 -43.11 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -7.13 Total: 0.15 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -3.55 Total: -9.18 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: -0.99 Total: -52.52 kcal Atomic # 8 Polarization: -3.87 SS G_CDS: -0.19 Total: -4.05 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.83 -11.28 -43.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449015916.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.831 kcal (2) G-P(sol) polarization free energy of solvation -31.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds