Wall clock time and date at job start Tue Mar 31 2020 14:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35804 * 117.00134 * 2 1 4 4 C 1.36675 * 120.22785 * 0.04339 * 3 2 1 5 5 C 1.39187 * 120.92110 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.46830 * 179.97438 * 5 4 3 7 7 N 1.46897 * 109.47507 * 269.97912 * 6 5 4 8 8 C 1.46906 * 110.99544 * 294.30380 * 7 6 5 9 9 C 1.53235 * 109.33827 * 172.74590 * 8 7 6 10 10 N 1.47083 * 108.52414 * 53.82453 * 9 8 7 11 11 C 1.36942 * 120.87958 * 128.83729 * 10 9 8 12 12 H 1.07996 * 120.00018 * 206.62854 * 11 10 9 13 13 C 1.38809 * 120.00037 * 26.62531 * 11 10 9 14 14 N 1.31621 * 120.00108 * 17.04584 * 13 11 10 15 15 Si 1.86799 * 120.00167 * 197.03830 * 13 11 10 16 16 H 1.48499 * 109.46720 * 90.00300 * 15 13 11 17 17 H 1.48501 * 109.47259 * 209.99991 * 15 13 11 18 18 H 1.48500 * 109.47048 * 330.00446 * 15 13 11 19 19 C 1.47079 * 118.23726 * 308.81951 * 10 9 8 20 20 C 1.46891 * 111.00386 * 170.00127 * 7 6 5 21 21 C 1.36166 * 121.06220 * 359.93264 * 5 4 3 22 22 C 1.40525 * 119.76851 * 0.02562 * 21 5 4 23 23 C 1.40559 * 121.26663 * 180.02562 * 22 21 5 24 24 C 1.36102 * 119.64873 * 179.97438 * 23 22 21 25 25 C 1.39360 * 120.97379 * 0.04727 * 24 23 22 26 26 C 1.36129 * 120.98152 * 359.97073 * 25 24 23 27 27 C 1.40412 * 119.66406 * 0.02562 * 26 25 24 28 28 H 1.09003 * 109.46842 * 60.00158 * 1 2 3 29 29 H 1.08997 * 109.47358 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47134 * 300.00277 * 1 2 3 31 31 H 1.08001 * 119.53644 * 359.97438 * 4 3 2 32 32 H 1.09004 * 109.47225 * 29.97826 * 6 5 4 33 33 H 1.09000 * 109.47450 * 149.97364 * 6 5 4 34 34 H 1.09004 * 109.48986 * 292.69919 * 8 7 6 35 35 H 1.08993 * 109.49684 * 52.78278 * 8 7 6 36 36 H 1.09003 * 109.62879 * 294.11725 * 9 8 7 37 37 H 1.09000 * 109.79162 * 173.63436 * 9 8 7 38 38 H 0.97003 * 120.00115 * 180.02562 * 14 13 11 39 39 H 1.09002 * 109.62788 * 291.46962 * 19 10 9 40 40 H 1.08998 * 109.78566 * 170.98795 * 19 10 9 41 41 H 1.09005 * 109.49524 * 307.21250 * 20 7 6 42 42 H 1.09003 * 109.49575 * 67.29136 * 20 7 6 43 43 H 1.07999 * 120.11833 * 180.02562 * 21 5 4 44 44 H 1.08004 * 120.17428 * 359.95538 * 23 22 21 45 45 H 1.07994 * 119.51228 * 180.02562 * 24 23 22 46 46 H 1.08001 * 119.50328 * 180.25771 * 25 24 23 47 47 H 1.08005 * 120.17222 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2100 0.0000 4 6 1.3058 2.3592 0.0009 5 6 1.9227 3.6069 0.0004 6 6 1.0751 4.8530 0.0008 7 7 0.7991 5.2581 -1.3840 8 6 2.0331 5.6663 -2.0688 9 6 1.7344 5.9060 -3.5525 10 7 0.6203 6.8606 -3.6566 11 6 0.7196 7.9729 -4.4493 12 1 0.1401 8.8543 -4.2179 13 6 1.5652 7.9675 -5.5500 14 7 2.0088 6.8266 -6.0336 15 14 2.0735 9.5796 -6.3453 16 1 3.3172 10.0771 -5.7045 17 1 2.3161 9.3619 -7.7941 18 1 0.9912 10.5811 -6.1695 19 6 -0.6033 6.5887 -2.8872 20 6 -0.2126 6.3221 -1.4297 21 6 3.2796 3.7198 0.0003 22 6 4.0760 2.5620 0.0003 23 6 5.4793 2.6418 0.0008 24 6 6.2187 1.4992 0.0012 25 6 5.6052 0.2479 0.0002 26 6 4.2488 0.1326 -0.0006 27 6 3.4530 1.2894 -0.0011 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.2275 2.2983 0.0012 32 1 0.1350 4.6528 0.5149 33 1 1.6067 5.6539 0.5146 34 1 2.4107 6.5854 -1.6207 35 1 2.7808 4.8794 -1.9708 36 1 1.4557 4.9649 -4.0267 37 1 2.6159 6.3169 -4.0447 38 1 2.6001 6.8228 -6.8026 39 1 -1.1067 5.7132 -3.2974 40 1 -1.2690 7.4503 -2.9361 41 1 -1.0934 6.0108 -0.8681 42 1 0.1964 7.2320 -0.9904 43 1 3.7423 4.6957 0.0003 44 1 5.9683 3.6049 0.0005 45 1 7.2968 1.5631 0.0020 46 1 6.2149 -0.6435 0.0048 47 1 3.7870 -0.8438 -0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449015916.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:44 Heat of formation + Delta-G solvation = 24.598885 kcal Electronic energy + Delta-G solvation = -27702.465893 eV Core-core repulsion = 24043.416861 eV Total energy + Delta-G solvation = -3659.049032 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.78787 -39.82599 -39.43878 -37.51301 -35.77866 -33.45968 -33.01987 -31.73396 -31.60533 -30.00056 -28.81596 -28.10175 -26.37220 -24.34330 -24.30993 -23.91940 -22.61410 -22.45439 -20.81749 -18.78125 -18.54327 -18.46148 -17.84937 -17.05605 -16.70405 -16.47932 -16.25314 -16.02341 -15.68846 -15.37935 -15.20931 -15.08559 -14.94933 -14.76725 -14.52602 -14.27408 -13.98558 -13.55077 -13.21085 -13.09819 -13.02745 -12.75486 -12.62237 -12.58964 -12.53770 -12.28977 -12.08687 -11.95241 -11.89789 -11.81577 -11.72728 -11.47299 -11.36461 -10.60039 -10.42313 -9.55413 -9.27507 -8.70039 -8.46905 -7.88201 -5.33698 -0.33157 0.01953 1.11982 1.45907 1.47223 1.56466 2.02045 2.27100 2.50095 2.99832 3.25742 3.29769 3.67304 3.68298 3.72846 3.97387 4.06823 4.12499 4.25679 4.28873 4.32844 4.35493 4.39883 4.44853 4.48496 4.50311 4.58726 4.62164 4.67035 4.73359 4.74275 4.77392 4.90006 4.97508 5.02783 5.06504 5.16478 5.18880 5.31154 5.35402 5.54751 5.56276 5.59927 5.65579 5.66188 5.77404 6.05734 6.17277 6.24216 6.36306 6.40271 7.11753 7.82635 8.37397 9.18647 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.014287 B = 0.003273 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.327540 B = 8551.708776 C = 9584.899749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.324 6.324 3 C 0.131 3.869 4 C -0.204 4.204 5 C -0.035 4.035 6 C 0.094 3.906 7 N -0.536 5.536 8 C 0.053 3.947 9 C 0.189 3.811 10 N -0.614 5.614 11 C -0.265 4.265 12 H 0.070 0.930 13 C -0.052 4.052 14 N -0.937 5.937 15 Si 0.969 3.031 16 H -0.285 1.285 17 H -0.295 1.295 18 H -0.267 1.267 19 C 0.144 3.856 20 C 0.055 3.945 21 C -0.150 4.150 22 C -0.034 4.034 23 C -0.128 4.128 24 C -0.106 4.106 25 C -0.130 4.130 26 C -0.100 4.100 27 C -0.094 4.094 28 H 0.055 0.945 29 H 0.124 0.876 30 H 0.067 0.933 31 H 0.141 0.859 32 H 0.100 0.900 33 H 0.045 0.955 34 H 0.020 0.980 35 H 0.074 0.926 36 H -0.010 1.010 37 H 0.055 0.945 38 H 0.250 0.750 39 H 0.014 0.986 40 H 0.063 0.937 41 H 0.099 0.901 42 H 0.027 0.973 43 H 0.128 0.872 44 H 0.141 0.859 45 H 0.151 0.849 46 H 0.150 0.850 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.331 -13.328 17.920 22.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.238 6.238 3 C 0.085 3.915 4 C -0.223 4.223 5 C -0.036 4.036 6 C -0.033 4.033 7 N -0.261 5.261 8 C -0.076 4.076 9 C 0.063 3.937 10 N -0.338 5.338 11 C -0.395 4.395 12 H 0.088 0.912 13 C -0.247 4.247 14 N -0.583 5.583 15 Si 0.797 3.203 16 H -0.212 1.212 17 H -0.221 1.221 18 H -0.191 1.191 19 C 0.018 3.982 20 C -0.073 4.073 21 C -0.169 4.169 22 C -0.034 4.034 23 C -0.146 4.146 24 C -0.124 4.124 25 C -0.148 4.148 26 C -0.117 4.117 27 C -0.094 4.094 28 H 0.074 0.926 29 H 0.143 0.857 30 H 0.086 0.914 31 H 0.159 0.841 32 H 0.118 0.882 33 H 0.063 0.937 34 H 0.038 0.962 35 H 0.092 0.908 36 H 0.009 0.991 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.032 0.968 40 H 0.081 0.919 41 H 0.118 0.882 42 H 0.045 0.955 43 H 0.146 0.854 44 H 0.159 0.841 45 H 0.169 0.831 46 H 0.168 0.832 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.261 -13.925 17.535 22.506 hybrid contribution 0.304 1.577 -0.619 1.721 sum 2.565 -12.348 16.917 21.100 Atomic orbital electron populations 1.23349 0.76339 1.05665 1.02139 1.85956 1.23376 1.26246 1.88207 1.18757 0.91434 0.85003 0.96315 1.20818 1.00865 0.91237 1.09429 1.19262 0.93551 0.94407 0.96372 1.21136 0.99536 0.93347 0.89252 1.61887 1.10203 1.39305 1.14683 1.22583 0.91779 0.97491 0.95790 1.20550 0.91325 0.90409 0.91389 1.44419 1.11965 1.25379 1.52070 1.19573 1.24401 0.91336 1.04211 0.91247 1.25819 1.02263 0.99670 0.96921 1.70210 1.37328 1.25773 1.25019 0.85234 0.78464 0.79698 0.76866 1.21171 1.22140 1.19142 1.21134 0.88551 0.97862 0.90621 1.22502 0.95360 0.91925 0.97554 1.20934 0.93398 0.97822 1.04754 1.18084 0.94606 0.91790 0.98968 1.21265 0.91721 1.00365 1.01248 1.21249 1.01473 0.91970 0.97673 1.21177 0.94445 0.98824 1.00330 1.21121 0.94444 0.97504 0.98678 1.17734 0.90657 0.94590 1.06447 0.92639 0.85750 0.91397 0.84119 0.88169 0.93684 0.96173 0.90756 0.99147 0.92695 0.94110 0.96836 0.91859 0.88249 0.95498 0.85417 0.84076 0.83142 0.83217 0.84575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.32 -7.72 9.72 -91.36 -0.89 -8.61 16 3 C 0.13 3.57 6.67 22.57 0.15 3.72 16 4 C -0.20 -5.50 8.62 22.13 0.19 -5.31 16 5 C -0.04 -1.00 4.87 -20.12 -0.10 -1.10 16 6 C 0.09 2.58 5.10 85.56 0.44 3.01 16 7 N -0.54 -18.77 4.62 -899.83 -4.16 -22.93 16 8 C 0.05 2.15 5.30 86.38 0.46 2.61 16 9 C 0.19 9.80 5.42 86.35 0.47 10.27 16 10 N -0.61 -32.30 3.04 -698.13 -2.12 -34.42 16 11 C -0.27 -14.99 9.63 84.03 0.81 -14.18 16 12 H 0.07 3.78 7.88 -2.91 -0.02 3.76 16 13 C -0.05 -2.95 4.93 84.86 0.42 -2.53 16 14 N -0.94 -57.22 11.15 21.65 0.24 -56.98 16 15 Si 0.97 45.62 29.59 68.60 2.03 47.65 16 16 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 17 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 19 C 0.14 6.15 6.69 86.35 0.58 6.73 16 20 C 0.06 1.88 5.62 86.38 0.49 2.37 16 21 C -0.15 -4.26 7.50 22.35 0.17 -4.09 16 22 C -0.03 -0.95 5.74 -21.30 -0.12 -1.08 16 23 C -0.13 -2.96 9.77 22.34 0.22 -2.74 16 24 C -0.11 -2.04 9.95 22.04 0.22 -1.82 16 25 C -0.13 -2.50 9.95 22.05 0.22 -2.29 16 26 C -0.10 -2.34 9.56 22.31 0.21 -2.12 16 27 C -0.09 -2.62 5.75 -21.23 -0.12 -2.74 16 28 H 0.05 0.95 7.66 -2.39 -0.02 0.93 16 29 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.07 0.92 7.65 -2.39 -0.02 0.90 16 31 H 0.14 3.26 6.21 -2.91 -0.02 3.25 16 32 H 0.10 2.27 7.90 -2.38 -0.02 2.25 16 33 H 0.04 1.19 8.05 -2.39 -0.02 1.17 16 34 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 2.90 5.64 -2.39 -0.01 2.89 16 36 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 37 H 0.05 3.17 6.11 -2.39 -0.01 3.16 16 38 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 39 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.06 2.55 7.96 -2.39 -0.02 2.54 16 41 H 0.10 2.66 7.99 -2.38 -0.02 2.64 16 42 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.13 3.42 7.89 -2.91 -0.02 3.39 16 44 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 45 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 46 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 47 H 0.14 2.85 7.62 -2.91 -0.02 2.82 16 Total: -1.00 -70.65 372.09 1.86 -68.79 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.96 Total: 16.36 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: 5.80 Total: -9.86 kcal Atomic # 7 Polarization: -108.29 SS G_CDS: -6.04 Total: -114.33 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: -0.89 Total: -8.61 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -70.65 1.86 -68.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449015916.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.387 kcal (2) G-P(sol) polarization free energy of solvation -70.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds