Wall clock time and date at job start Tue Mar 31 2020 14:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35887 * 117.00255 * 2 1 4 4 C 1.36597 * 119.56845 * 0.24300 * 3 2 1 5 5 C 1.40420 * 119.62046 * 180.27463 * 4 3 2 6 6 C 1.40584 * 121.24024 * 179.71803 * 5 4 3 7 7 C 1.36082 * 119.65990 * 180.02562 * 6 5 4 8 8 C 1.39382 * 120.98576 * 0.02562 * 7 6 5 9 9 C 1.36100 * 120.99754 * 359.97438 * 8 7 6 10 10 C 1.40538 * 119.66871 * 0.02562 * 9 8 7 11 11 C 1.40554 * 121.22400 * 179.97438 * 10 9 8 12 12 C 1.36006 * 119.73189 * 180.02562 * 11 10 9 13 13 C 1.50699 * 119.53224 * 179.97438 * 12 11 10 14 14 N 1.46907 * 109.47327 * 254.49677 * 13 12 11 15 15 C 1.46895 * 110.99515 * 75.52976 * 14 13 12 16 16 C 1.53243 * 109.33753 * 187.25389 * 15 14 13 17 17 N 1.47087 * 108.51941 * 306.16893 * 16 15 14 18 18 C 1.36936 * 120.87857 * 231.18435 * 17 16 15 19 19 H 1.07998 * 120.00063 * 25.93588 * 18 17 16 20 20 C 1.38814 * 119.99704 * 205.65188 * 18 17 16 21 21 N 1.31618 * 119.99877 * 19.06011 * 20 18 17 22 22 Si 1.86799 * 119.99872 * 199.05577 * 20 18 17 23 23 H 1.48504 * 109.47043 * 94.99135 * 22 20 18 24 24 H 1.48496 * 109.47099 * 214.98714 * 22 20 18 25 25 H 1.48491 * 109.47481 * 334.99098 * 22 20 18 26 26 C 1.47079 * 118.23441 * 51.45746 * 17 16 15 27 27 C 1.46902 * 110.99809 * 199.83140 * 14 13 12 28 28 H 1.08994 * 109.47356 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47202 * 300.00521 * 1 2 3 30 30 H 1.08997 * 109.46750 * 59.99757 * 1 2 3 31 31 H 1.08001 * 120.19285 * 359.97438 * 4 3 2 32 32 H 1.08002 * 120.16816 * 359.97438 * 6 5 4 33 33 H 1.08000 * 119.50714 * 179.97438 * 7 6 5 34 34 H 1.07990 * 119.50146 * 179.97438 * 8 7 6 35 35 H 1.07994 * 120.16240 * 179.97438 * 9 8 7 36 36 H 1.08008 * 120.12901 * 0.04158 * 11 10 9 37 37 H 1.09002 * 109.47256 * 134.49925 * 13 12 11 38 38 H 1.08999 * 109.47206 * 14.50139 * 13 12 11 39 39 H 1.09000 * 109.49668 * 67.29636 * 15 14 13 40 40 H 1.08997 * 109.51909 * 307.22291 * 15 14 13 41 41 H 1.08998 * 109.62782 * 186.46064 * 16 15 14 42 42 H 1.08999 * 109.78917 * 65.97184 * 16 15 14 43 43 H 0.96996 * 119.99868 * 179.97438 * 21 20 18 44 44 H 1.09005 * 109.62959 * 68.25523 * 26 17 16 45 45 H 1.08999 * 109.62343 * 188.83008 * 26 17 16 46 46 H 1.09003 * 109.49056 * 292.70699 * 27 14 13 47 47 H 1.08995 * 109.49527 * 52.76303 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2107 0.0000 4 6 1.2935 2.3507 0.0050 5 6 1.9298 3.6024 -0.0008 6 6 1.1888 4.7971 -0.0018 7 6 1.8387 5.9927 -0.0081 8 6 3.2313 6.0524 -0.0140 9 6 3.9815 4.9169 -0.0133 10 6 3.3462 3.6633 -0.0069 11 6 4.0889 2.4700 -0.0065 12 6 3.4427 1.2733 -0.0008 13 6 4.2434 -0.0033 -0.0009 14 7 4.1844 -0.6183 -1.3338 15 6 5.0478 0.0976 -2.2824 16 6 4.8215 -0.4571 -3.6928 17 7 5.0114 -1.9153 -3.6573 18 6 5.8451 -2.5373 -4.5479 19 1 6.6661 -1.9925 -4.9901 20 6 5.6385 -3.8697 -4.8778 21 7 4.4686 -4.4295 -4.6532 22 14 7.0207 -4.8682 -5.6406 23 1 7.7407 -5.6114 -4.5754 24 1 6.4542 -5.8308 -6.6192 25 1 7.9660 -3.9565 -6.3335 26 6 4.2772 -2.6881 -2.6439 27 6 4.5295 -2.0448 -1.2710 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 0.2152 2.2898 0.0086 32 1 0.1092 4.7662 0.0015 33 1 1.2670 6.9089 -0.0092 34 1 3.7223 7.0142 -0.0194 35 1 5.0597 4.9788 -0.0184 36 1 5.1685 2.5034 -0.0104 37 1 3.8294 -0.6920 0.7356 38 1 5.2804 0.2182 0.2515 39 1 6.0915 -0.0408 -2.0002 40 1 4.8045 1.1600 -2.2661 41 1 5.5393 -0.0111 -4.3812 42 1 3.8078 -0.2277 -4.0213 43 1 4.3241 -5.3604 -4.8841 44 1 3.2111 -2.6691 -2.8703 45 1 4.6350 -3.7177 -2.6386 46 1 5.5804 -2.1534 -1.0029 47 1 3.9101 -2.5362 -0.5208 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449016951.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:26 Heat of formation + Delta-G solvation = 43.712917 kcal Electronic energy + Delta-G solvation = -27811.347647 eV Core-core repulsion = 24153.127461 eV Total energy + Delta-G solvation = -3658.220186 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.77127 -38.80918 -38.00133 -35.90982 -34.20686 -32.64882 -31.53029 -30.44987 -29.67853 -28.94353 -27.39136 -27.02138 -24.74526 -22.82657 -22.75086 -22.39339 -21.91941 -21.28360 -19.00900 -18.31411 -17.18750 -16.72009 -16.60702 -15.70736 -15.31124 -15.04444 -14.87880 -14.64634 -14.49662 -14.17618 -13.83337 -13.54540 -13.48277 -13.33714 -13.15155 -13.09866 -12.91959 -12.35210 -12.05533 -11.82904 -11.77511 -11.51308 -11.23770 -11.09524 -11.05586 -10.75659 -10.71960 -10.50570 -10.37209 -10.21628 -9.99036 -9.89888 -9.67395 -9.53942 -8.45168 -8.21659 -7.75716 -7.68041 -6.62255 -5.73521 -3.12539 0.50534 1.04080 2.02026 2.93770 3.36083 3.40566 3.47629 3.49157 4.05645 4.47579 4.53941 4.63975 4.72766 4.84616 4.92137 5.03031 5.09033 5.16763 5.18320 5.23492 5.36038 5.42670 5.52187 5.53450 5.56579 5.61060 5.73638 5.90891 5.93248 5.97153 6.01003 6.07431 6.19045 6.24695 6.30109 6.39674 6.41692 6.48886 6.52759 6.61476 6.70086 6.77607 6.88085 7.01242 7.32798 7.46406 7.70332 7.73016 7.79336 7.89611 8.47942 9.26186 9.90345 10.49161 11.35206 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.019485 B = 0.003011 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.663593 B = 9297.089687 C =10068.970513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.294 6.294 3 C 0.169 3.831 4 C -0.228 4.228 5 C -0.012 4.012 6 C -0.120 4.120 7 C -0.111 4.111 8 C -0.138 4.138 9 C -0.091 4.091 10 C -0.081 4.081 11 C -0.072 4.072 12 C -0.078 4.078 13 C 0.096 3.904 14 N -0.520 5.520 15 C 0.045 3.955 16 C 0.150 3.850 17 N -0.596 5.596 18 C -0.250 4.250 19 H 0.066 0.934 20 C 0.000 4.000 21 N -0.902 5.902 22 Si 0.901 3.099 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.279 1.279 26 C 0.180 3.820 27 C 0.039 3.961 28 H 0.100 0.900 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.130 0.870 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.132 0.868 37 H 0.080 0.920 38 H 0.037 0.963 39 H 0.026 0.974 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.023 0.977 43 H 0.253 0.747 44 H 0.026 0.974 45 H 0.087 0.913 46 H 0.023 0.977 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.606 17.196 13.632 22.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.206 6.206 3 C 0.123 3.877 4 C -0.247 4.247 5 C -0.012 4.012 6 C -0.138 4.138 7 C -0.129 4.129 8 C -0.156 4.156 9 C -0.109 4.109 10 C -0.082 4.082 11 C -0.090 4.090 12 C -0.079 4.079 13 C -0.032 4.032 14 N -0.245 5.245 15 C -0.085 4.085 16 C 0.024 3.976 17 N -0.319 5.319 18 C -0.379 4.379 19 H 0.084 0.916 20 C -0.199 4.199 21 N -0.547 5.547 22 Si 0.731 3.269 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.205 1.205 26 C 0.054 3.946 27 C -0.090 4.090 28 H 0.118 0.882 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.148 0.852 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.142 0.858 36 H 0.149 0.851 37 H 0.099 0.901 38 H 0.055 0.945 39 H 0.044 0.956 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.041 0.959 43 H 0.063 0.937 44 H 0.044 0.956 45 H 0.105 0.895 46 H 0.041 0.959 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.042 16.823 13.388 22.624 hybrid contribution 1.133 -0.405 -0.158 1.213 sum -5.910 16.419 13.230 21.898 Atomic orbital electron populations 1.23054 0.78913 1.04000 1.00846 1.86227 1.20702 1.26289 1.87343 1.18489 0.91574 0.84327 0.93340 1.20918 0.99744 0.91415 1.12589 1.17753 0.92335 0.93098 0.98023 1.20930 0.99400 0.91728 1.01696 1.20793 0.94609 0.97683 0.99827 1.20740 0.93991 0.98315 1.02527 1.20992 0.99654 0.91548 0.98660 1.17999 0.92624 0.93681 1.03854 1.20809 0.99540 0.90388 0.98306 1.19044 0.90825 0.95750 1.02299 1.20941 0.96381 0.92852 0.92992 1.61881 1.53976 1.03030 1.05606 1.22631 0.93643 0.96885 0.95309 1.20942 0.98207 0.86148 0.92338 1.44173 1.52038 1.00633 1.35054 1.19223 1.04768 0.94415 1.19511 0.91639 1.24980 0.96223 0.98881 0.99772 1.70058 1.20228 1.12676 1.51758 0.86288 0.81892 0.80174 0.78549 1.21589 1.21835 1.20467 1.20939 0.95000 0.95637 0.83022 1.22969 0.97444 0.87105 1.01516 0.88181 0.93144 0.92661 0.85241 0.86024 0.86369 0.86340 0.85788 0.85062 0.90139 0.94467 0.95584 0.92191 0.92849 0.95867 0.93709 0.95583 0.89466 0.95855 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.80 101.05 0.99 1.27 16 2 O -0.29 -4.29 9.78 -19.38 -0.19 -4.48 16 3 C 0.17 2.44 6.63 -39.59 -0.26 2.18 16 4 C -0.23 -2.90 8.74 -39.35 -0.34 -3.24 16 5 C -0.01 -0.15 5.74 -106.84 -0.61 -0.76 16 6 C -0.12 -1.27 9.77 -39.47 -0.39 -1.65 16 7 C -0.11 -1.06 9.95 -39.93 -0.40 -1.45 16 8 C -0.14 -1.32 9.95 -39.92 -0.40 -1.72 16 9 C -0.09 -0.96 9.77 -39.48 -0.39 -1.35 16 10 C -0.08 -1.03 5.74 -106.81 -0.61 -1.64 16 11 C -0.07 -0.92 8.74 -39.51 -0.35 -1.27 16 12 C -0.08 -1.13 4.79 -104.84 -0.50 -1.63 16 13 C 0.10 1.48 4.69 -4.97 -0.02 1.45 16 14 N -0.52 -9.70 4.55 -235.46 -1.07 -10.77 16 15 C 0.04 0.85 5.44 -3.70 -0.02 0.83 16 16 C 0.15 3.36 6.69 -3.60 -0.02 3.34 16 17 N -0.60 -15.55 3.03 -171.73 -0.52 -16.07 16 18 C -0.25 -7.03 9.63 -15.06 -0.15 -7.17 16 19 H 0.07 1.81 7.89 -52.49 -0.41 1.40 16 20 C 0.00 -0.01 4.89 -17.43 -0.09 -0.09 16 21 N -0.90 -26.64 11.20 55.49 0.62 -26.02 16 22 Si 0.90 22.01 29.59 -169.99 -5.03 16.98 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 C 0.18 4.47 5.47 -3.37 -0.02 4.45 16 27 C 0.04 0.78 5.61 -3.46 -0.02 0.76 16 28 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.42 7.62 -51.93 -0.40 0.02 16 30 H 0.05 0.54 7.64 -51.93 -0.40 0.15 16 31 H 0.13 1.36 6.19 -52.49 -0.32 1.03 16 32 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.13 1.45 7.95 -52.48 -0.42 1.04 16 37 H 0.08 1.21 7.63 -51.93 -0.40 0.82 16 38 H 0.04 0.53 7.75 -51.93 -0.40 0.13 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 1.03 6.97 -51.93 -0.36 0.67 16 41 H 0.05 1.15 7.95 -51.93 -0.41 0.73 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.09 2.38 6.09 -51.93 -0.32 2.06 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 1.13 7.90 -51.93 -0.41 0.72 16 LS Contribution 374.33 15.07 5.64 5.64 Total: -1.00 -32.06 374.33 -11.33 -43.39 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -7.19 Total: -0.97 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -3.59 Total: -7.71 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: -0.97 Total: -52.86 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -0.19 Total: -4.48 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.06 -11.33 -43.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449016951.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.106 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds