Wall clock time and date at job start Tue Mar 31 2020 14:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35887 * 117.00255 * 2 1 4 4 C 1.36597 * 119.56845 * 0.24300 * 3 2 1 5 5 C 1.40420 * 119.62046 * 180.27463 * 4 3 2 6 6 C 1.40584 * 121.24024 * 179.71803 * 5 4 3 7 7 C 1.36082 * 119.65990 * 180.02562 * 6 5 4 8 8 C 1.39382 * 120.98576 * 0.02562 * 7 6 5 9 9 C 1.36100 * 120.99754 * 359.97438 * 8 7 6 10 10 C 1.40538 * 119.66871 * 0.02562 * 9 8 7 11 11 C 1.40554 * 121.22400 * 179.97438 * 10 9 8 12 12 C 1.36006 * 119.73189 * 180.02562 * 11 10 9 13 13 C 1.50699 * 119.53224 * 179.97438 * 12 11 10 14 14 N 1.46907 * 109.47327 * 254.49677 * 13 12 11 15 15 C 1.46895 * 110.99515 * 75.52976 * 14 13 12 16 16 C 1.53243 * 109.33753 * 187.25389 * 15 14 13 17 17 N 1.47087 * 108.51941 * 306.16893 * 16 15 14 18 18 C 1.36936 * 120.87857 * 231.18435 * 17 16 15 19 19 H 1.07998 * 120.00063 * 25.93588 * 18 17 16 20 20 C 1.38814 * 119.99704 * 205.65188 * 18 17 16 21 21 N 1.31618 * 119.99877 * 19.06011 * 20 18 17 22 22 Si 1.86799 * 119.99872 * 199.05577 * 20 18 17 23 23 H 1.48504 * 109.47043 * 94.99135 * 22 20 18 24 24 H 1.48496 * 109.47099 * 214.98714 * 22 20 18 25 25 H 1.48491 * 109.47481 * 334.99098 * 22 20 18 26 26 C 1.47079 * 118.23441 * 51.45746 * 17 16 15 27 27 C 1.46902 * 110.99809 * 199.83140 * 14 13 12 28 28 H 1.08994 * 109.47356 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47202 * 300.00521 * 1 2 3 30 30 H 1.08997 * 109.46750 * 59.99757 * 1 2 3 31 31 H 1.08001 * 120.19285 * 359.97438 * 4 3 2 32 32 H 1.08002 * 120.16816 * 359.97438 * 6 5 4 33 33 H 1.08000 * 119.50714 * 179.97438 * 7 6 5 34 34 H 1.07990 * 119.50146 * 179.97438 * 8 7 6 35 35 H 1.07994 * 120.16240 * 179.97438 * 9 8 7 36 36 H 1.08008 * 120.12901 * 0.04158 * 11 10 9 37 37 H 1.09002 * 109.47256 * 134.49925 * 13 12 11 38 38 H 1.08999 * 109.47206 * 14.50139 * 13 12 11 39 39 H 1.09000 * 109.49668 * 67.29636 * 15 14 13 40 40 H 1.08997 * 109.51909 * 307.22291 * 15 14 13 41 41 H 1.08998 * 109.62782 * 186.46064 * 16 15 14 42 42 H 1.08999 * 109.78917 * 65.97184 * 16 15 14 43 43 H 0.96996 * 119.99868 * 179.97438 * 21 20 18 44 44 H 1.09005 * 109.62959 * 68.25523 * 26 17 16 45 45 H 1.08999 * 109.62343 * 188.83008 * 26 17 16 46 46 H 1.09003 * 109.49056 * 292.70699 * 27 14 13 47 47 H 1.08995 * 109.49527 * 52.76303 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2107 0.0000 4 6 1.2935 2.3507 0.0050 5 6 1.9298 3.6024 -0.0008 6 6 1.1888 4.7971 -0.0018 7 6 1.8387 5.9927 -0.0081 8 6 3.2313 6.0524 -0.0140 9 6 3.9815 4.9169 -0.0133 10 6 3.3462 3.6633 -0.0069 11 6 4.0889 2.4700 -0.0065 12 6 3.4427 1.2733 -0.0008 13 6 4.2434 -0.0033 -0.0009 14 7 4.1844 -0.6183 -1.3338 15 6 5.0478 0.0976 -2.2824 16 6 4.8215 -0.4571 -3.6928 17 7 5.0114 -1.9153 -3.6573 18 6 5.8451 -2.5373 -4.5479 19 1 6.6661 -1.9925 -4.9901 20 6 5.6385 -3.8697 -4.8778 21 7 4.4686 -4.4295 -4.6532 22 14 7.0207 -4.8682 -5.6406 23 1 7.7407 -5.6114 -4.5754 24 1 6.4542 -5.8308 -6.6192 25 1 7.9660 -3.9565 -6.3335 26 6 4.2772 -2.6881 -2.6439 27 6 4.5295 -2.0448 -1.2710 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 0.2152 2.2898 0.0086 32 1 0.1092 4.7662 0.0015 33 1 1.2670 6.9089 -0.0092 34 1 3.7223 7.0142 -0.0194 35 1 5.0597 4.9788 -0.0184 36 1 5.1685 2.5034 -0.0104 37 1 3.8294 -0.6920 0.7356 38 1 5.2804 0.2182 0.2515 39 1 6.0915 -0.0408 -2.0002 40 1 4.8045 1.1600 -2.2661 41 1 5.5393 -0.0111 -4.3812 42 1 3.8078 -0.2277 -4.0213 43 1 4.3241 -5.3604 -4.8841 44 1 3.2111 -2.6691 -2.8703 45 1 4.6350 -3.7177 -2.6386 46 1 5.5804 -2.1534 -1.0029 47 1 3.9101 -2.5362 -0.5208 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449016951.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:25 Heat of formation + Delta-G solvation = 25.575111 kcal Electronic energy + Delta-G solvation = -27812.134161 eV Core-core repulsion = 24153.127461 eV Total energy + Delta-G solvation = -3659.006700 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.68845 -39.76694 -39.50404 -37.09009 -35.77749 -33.69682 -33.17995 -31.81983 -31.30648 -29.84806 -28.65155 -28.17546 -26.31436 -24.37782 -24.16645 -23.64658 -22.79997 -22.43475 -20.81244 -19.20277 -18.73097 -18.03623 -17.58034 -16.95081 -16.65937 -16.19293 -16.11506 -15.88193 -15.61367 -15.46621 -15.32145 -15.25388 -14.88645 -14.67828 -14.38634 -14.24687 -13.93127 -13.63516 -13.27250 -13.14410 -12.97770 -12.77425 -12.60634 -12.60422 -12.46430 -12.28855 -12.10083 -11.98558 -11.83843 -11.65360 -11.57353 -11.39736 -11.27844 -10.74988 -10.58093 -9.22814 -9.12338 -8.69463 -8.61245 -7.87740 -5.31218 -0.35783 0.15478 1.15540 1.46524 1.47748 1.57519 2.04997 2.47973 2.50882 3.04716 3.25957 3.31088 3.67638 3.68737 3.76741 4.06278 4.08372 4.17991 4.25980 4.30589 4.33657 4.36325 4.41639 4.42259 4.48070 4.52856 4.61079 4.64679 4.69972 4.73363 4.78140 4.80706 4.87933 4.98988 5.03123 5.12815 5.15272 5.18567 5.34052 5.35955 5.49865 5.61001 5.67102 5.67713 5.68181 5.81274 6.11339 6.22961 6.29110 6.37340 6.56002 7.12379 7.83046 8.38286 9.19213 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.019485 B = 0.003011 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.663593 B = 9297.089687 C =10068.970513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.322 6.322 3 C 0.147 3.853 4 C -0.228 4.228 5 C -0.031 4.031 6 C -0.132 4.132 7 C -0.108 4.108 8 C -0.137 4.137 9 C -0.101 4.101 10 C -0.100 4.100 11 C -0.067 4.067 12 C -0.102 4.102 13 C 0.105 3.895 14 N -0.531 5.531 15 C 0.061 3.939 16 C 0.147 3.853 17 N -0.613 5.613 18 C -0.264 4.264 19 H 0.068 0.932 20 C -0.052 4.052 21 N -0.935 5.935 22 Si 0.970 3.030 23 H -0.285 1.285 24 H -0.294 1.294 25 H -0.268 1.268 26 C 0.190 3.810 27 C 0.056 3.944 28 H 0.108 0.892 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.146 0.854 32 H 0.139 0.861 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.148 0.852 37 H 0.080 0.920 38 H 0.051 0.949 39 H 0.028 0.972 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.007 0.993 43 H 0.250 0.750 44 H -0.006 1.006 45 H 0.058 0.942 46 H 0.022 0.978 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.965 19.798 14.542 25.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.235 6.235 3 C 0.101 3.899 4 C -0.247 4.247 5 C -0.031 4.031 6 C -0.150 4.150 7 C -0.126 4.126 8 C -0.155 4.155 9 C -0.119 4.119 10 C -0.101 4.101 11 C -0.086 4.086 12 C -0.103 4.103 13 C -0.023 4.023 14 N -0.255 5.255 15 C -0.069 4.069 16 C 0.021 3.979 17 N -0.337 5.337 18 C -0.394 4.394 19 H 0.086 0.914 20 C -0.247 4.247 21 N -0.581 5.581 22 Si 0.798 3.202 23 H -0.212 1.212 24 H -0.221 1.221 25 H -0.192 1.192 26 C 0.064 3.936 27 C -0.073 4.073 28 H 0.126 0.874 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.163 0.837 32 H 0.157 0.843 33 H 0.164 0.836 34 H 0.164 0.836 35 H 0.161 0.839 36 H 0.165 0.835 37 H 0.098 0.902 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.099 0.901 41 H 0.077 0.923 42 H 0.025 0.975 43 H 0.060 0.940 44 H 0.012 0.988 45 H 0.076 0.924 46 H 0.040 0.960 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.400 19.464 14.316 24.995 hybrid contribution 0.837 -1.026 -0.440 1.395 sum -5.564 18.437 13.876 23.737 Atomic orbital electron populations 1.23248 0.77279 1.04952 1.01848 1.86169 1.22622 1.26938 1.87744 1.18678 0.91913 0.84711 0.94622 1.21126 1.00559 0.91157 1.11818 1.18070 0.92860 0.93801 0.98398 1.21202 1.00448 0.91465 1.01909 1.21205 0.95006 0.98401 0.97996 1.21150 0.94224 0.99207 1.00883 1.21269 1.00878 0.91089 0.98674 1.18261 0.92913 0.94445 1.04443 1.21010 1.00365 0.90065 0.97118 1.19027 0.91015 0.95618 1.04635 1.20879 0.97406 0.93279 0.90689 1.61785 1.53941 1.02055 1.07755 1.22397 0.93755 0.97666 0.93051 1.21067 0.97367 0.84419 0.95019 1.44450 1.51943 1.02141 1.35166 1.19561 1.05156 0.95009 1.19719 0.91410 1.25785 0.98355 0.99838 1.00764 1.70219 1.22128 1.12674 1.53122 0.85212 0.79006 0.78430 0.77576 1.21205 1.22124 1.19232 1.20675 0.92717 0.94747 0.85477 1.22628 0.97634 0.88411 0.98676 0.87359 0.91149 0.92546 0.83675 0.84283 0.83576 0.83645 0.83921 0.83477 0.90203 0.93083 0.95412 0.90057 0.92253 0.97533 0.94046 0.98767 0.92401 0.95961 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.80 113.37 1.11 1.54 16 2 O -0.32 -9.47 9.78 -92.28 -0.90 -10.37 16 3 C 0.15 4.20 6.63 22.27 0.15 4.34 16 4 C -0.23 -5.62 8.74 22.42 0.20 -5.43 16 5 C -0.03 -0.74 5.74 -21.30 -0.12 -0.86 16 6 C -0.13 -2.50 9.77 22.34 0.22 -2.28 16 7 C -0.11 -1.70 9.95 22.04 0.22 -1.48 16 8 C -0.14 -2.15 9.95 22.05 0.22 -1.93 16 9 C -0.10 -1.89 9.77 22.33 0.22 -1.67 16 10 C -0.10 -2.37 5.74 -21.28 -0.12 -2.49 16 11 C -0.07 -1.63 8.74 22.32 0.19 -1.43 16 12 C -0.10 -2.87 4.79 -20.00 -0.10 -2.97 16 13 C 0.10 3.12 4.69 85.56 0.40 3.52 16 14 N -0.53 -19.64 4.55 -898.87 -4.09 -23.73 16 15 C 0.06 2.24 5.44 86.39 0.47 2.71 16 16 C 0.15 6.65 6.69 86.35 0.58 7.23 16 17 N -0.61 -32.77 3.03 -697.22 -2.12 -34.89 16 18 C -0.26 -15.12 9.63 84.03 0.81 -14.31 16 19 H 0.07 3.76 7.89 -2.91 -0.02 3.74 16 20 C -0.05 -3.00 4.89 84.86 0.42 -2.58 16 21 N -0.94 -56.96 11.20 21.65 0.24 -56.72 16 22 Si 0.97 45.82 29.59 68.60 2.03 47.85 16 23 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 24 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 25 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 26 C 0.19 9.80 5.47 86.50 0.47 10.27 16 27 C 0.06 2.28 5.61 86.54 0.49 2.76 16 28 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.07 1.11 7.62 -2.39 -0.02 1.09 16 30 H 0.06 1.10 7.64 -2.39 -0.02 1.08 16 31 H 0.15 2.90 6.19 -2.91 -0.02 2.88 16 32 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 33 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 34 H 0.15 1.47 8.06 -2.92 -0.02 1.44 16 35 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 36 H 0.15 2.93 7.95 -2.91 -0.02 2.91 16 37 H 0.08 2.37 7.63 -2.39 -0.02 2.35 16 38 H 0.05 1.37 7.75 -2.39 -0.02 1.36 16 39 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.08 2.68 6.97 -2.39 -0.02 2.66 16 41 H 0.06 2.56 7.95 -2.39 -0.02 2.54 16 42 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 44 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 45 H 0.06 3.30 6.09 -2.39 -0.01 3.28 16 46 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.08 2.87 7.90 -2.39 -0.02 2.85 16 Total: -1.00 -70.66 374.33 1.94 -68.73 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.95 Total: 14.17 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: 5.82 Total: -5.04 kcal Atomic # 7 Polarization: -109.38 SS G_CDS: -5.96 Total: -115.34 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.90 Total: -10.37 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -70.66 1.94 -68.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449016951.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.302 kcal (2) G-P(sol) polarization free energy of solvation -70.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds