Wall clock time and date at job start Tue Mar 31 2020 15:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50703 * 109.46773 * 2 1 4 4 C 1.30998 * 120.00273 * 127.20111 * 3 2 1 5 5 C 1.50697 * 119.99752 * 7.80781 * 4 3 2 6 6 N 1.46893 * 109.47037 * 127.32845 * 5 4 3 7 7 C 1.46905 * 111.00082 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47342 * 184.77143 * 7 6 5 9 9 C 1.35065 * 126.07629 * 105.64579 * 8 7 6 10 10 N 1.35049 * 107.98995 * 180.14847 * 9 8 7 11 11 C 1.46494 * 125.93290 * 179.87407 * 10 9 8 12 12 C 1.50691 * 109.47414 * 124.71464 * 11 10 9 13 13 H 1.07998 * 120.00088 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00224 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99730 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00315 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47109 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47215 * 120.00272 * 16 14 12 19 19 H 1.48500 * 109.47305 * 240.00194 * 16 14 12 20 20 N 1.40073 * 108.13933 * 359.60697 * 10 9 8 21 21 C 1.31650 * 108.10134 * 0.24427 * 20 10 9 22 22 C 1.48372 * 126.03863 * 179.97438 * 21 20 10 23 23 C 1.39768 * 120.90169 * 137.39421 * 22 21 20 24 24 C 1.37967 * 119.02223 * 179.72783 * 23 22 21 25 25 N 1.31937 * 120.87554 * 0.56437 * 24 23 22 26 26 C 1.31931 * 122.00624 * 359.70680 * 25 24 23 27 27 C 1.37967 * 120.88022 * 0.02562 * 26 25 24 28 28 H 1.09000 * 109.47072 * 300.00344 * 1 2 3 29 29 H 1.08999 * 109.46929 * 60.00707 * 1 2 3 30 30 H 1.09005 * 109.46774 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47072 * 239.99656 * 2 1 3 32 32 H 1.08999 * 109.46929 * 119.99293 * 2 1 3 33 33 H 1.08003 * 119.99668 * 307.18904 * 3 2 1 34 34 H 1.07999 * 120.00018 * 187.80799 * 4 3 2 35 35 H 1.09002 * 109.47524 * 7.32073 * 5 4 3 36 36 H 1.09007 * 109.46882 * 247.32204 * 5 4 3 37 37 H 1.00903 * 111.00826 * 56.04418 * 6 5 4 38 38 H 1.09007 * 109.46915 * 64.77352 * 7 6 5 39 39 H 1.08998 * 109.47153 * 304.77166 * 7 6 5 40 40 H 1.08002 * 126.00187 * 359.97438 * 9 8 7 41 41 H 1.09006 * 109.46934 * 244.71922 * 11 10 9 42 42 H 1.08999 * 109.47118 * 4.71059 * 11 10 9 43 43 H 0.97006 * 119.99571 * 179.97438 * 15 14 12 44 44 H 1.08004 * 120.49069 * 359.97438 * 23 22 21 45 45 H 1.07994 * 119.56174 * 180.24633 * 24 23 22 46 46 H 1.08001 * 119.56321 * 180.02562 * 26 25 24 47 47 H 1.08004 * 120.48927 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8973 1.8099 0.9036 5 6 3.5234 0.8005 1.8311 6 7 4.9855 0.9328 1.7837 7 6 5.6312 -0.0373 2.6781 8 6 7.1186 0.2050 2.6924 9 6 7.8220 0.7753 3.6945 10 7 9.1198 0.8148 3.3233 11 6 10.2249 1.3576 4.1171 12 6 11.2916 0.3055 4.2786 13 1 11.1594 -0.6702 3.8347 14 6 12.4364 0.5883 4.9931 15 7 12.5971 1.7762 5.5341 16 14 13.7583 -0.7160 5.1940 17 1 13.3381 -1.9581 4.4969 18 1 15.0313 -0.2251 4.6077 19 1 13.9562 -1.0021 6.6377 20 7 9.2268 0.2410 2.0499 21 6 8.0231 -0.1281 1.6651 22 6 7.6799 -0.7795 0.3770 23 6 6.7800 -1.8479 0.3302 24 6 6.4844 -2.4211 -0.8895 25 7 7.0469 -1.9807 -1.9987 26 6 7.9052 -0.9788 -1.9974 27 6 8.2525 -0.3454 -0.8219 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 1.6792 2.1184 -0.7452 34 1 3.1618 2.8539 0.9838 35 1 3.2391 -0.2046 1.5196 36 1 3.1754 0.9775 2.8489 37 1 5.2709 1.8748 2.0061 38 1 5.4312 -1.0482 2.3228 39 1 5.2346 0.0784 3.6868 40 1 7.4171 1.1386 4.6275 41 1 10.6449 2.2259 3.6092 42 1 9.8556 1.6543 5.0987 43 1 13.4024 1.9751 6.0371 44 1 6.3197 -2.2167 1.2349 45 1 5.7872 -3.2445 -0.9362 46 1 8.3419 -0.6500 -2.9288 47 1 8.9555 0.4745 -0.8282 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449454368.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:34 Heat of formation + Delta-G solvation = 122.157485 kcal Electronic energy + Delta-G solvation = -26566.322807 eV Core-core repulsion = 22943.796984 eV Total energy + Delta-G solvation = -3622.525823 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.77017 -39.50469 -37.45932 -35.19491 -33.97599 -32.88306 -31.55035 -31.00176 -30.70406 -29.63046 -27.51244 -25.67335 -24.21846 -23.62401 -23.39620 -23.03943 -22.02010 -20.09130 -19.56821 -18.57585 -16.79600 -16.66276 -16.07007 -15.92747 -15.75789 -15.38471 -15.26295 -14.73681 -14.39553 -14.29260 -14.09258 -13.78101 -13.62835 -13.51071 -13.38374 -13.13000 -12.54489 -12.32810 -12.29784 -12.18742 -12.03118 -11.81778 -11.67254 -11.27534 -11.19293 -11.04598 -10.89653 -10.56105 -10.34842 -10.08673 -9.94843 -9.43424 -9.32667 -9.23047 -8.93443 -8.72454 -8.47404 -8.27386 -7.75657 -6.33135 -4.38531 1.31217 1.38651 2.04623 2.60102 3.16619 3.17657 3.25633 3.29928 3.39264 4.12512 4.24828 4.50335 4.56566 4.62700 4.77708 4.84746 5.01812 5.02456 5.04358 5.10122 5.17554 5.26672 5.30404 5.38364 5.40940 5.42063 5.45706 5.59063 5.66687 5.70272 5.76231 5.86357 5.91151 5.94414 5.97543 6.13083 6.16881 6.42971 6.50023 6.53839 6.70530 6.81616 6.89275 6.92479 7.06055 7.18778 7.43788 7.59998 7.76076 7.84694 8.15806 8.40390 8.70021 9.27990 10.75831 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013779 B = 0.002882 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.529682 B = 9713.935583 C =11149.770879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.153 4.153 4 C -0.151 4.151 5 C 0.078 3.922 6 N -0.677 5.677 7 C 0.144 3.856 8 C -0.246 4.246 9 C 0.056 3.944 10 N -0.318 5.318 11 C 0.255 3.745 12 C -0.530 4.530 13 H 0.070 0.930 14 C 0.063 3.937 15 N -0.894 5.894 16 Si 0.908 3.092 17 H -0.270 1.270 18 H -0.280 1.280 19 H -0.281 1.281 20 N -0.258 5.258 21 C 0.085 3.915 22 C 0.070 3.930 23 C -0.149 4.149 24 C 0.094 3.906 25 N -0.494 5.494 26 C 0.095 3.905 27 C -0.150 4.150 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.032 0.968 37 H 0.341 0.659 38 H 0.074 0.926 39 H 0.031 0.969 40 H 0.165 0.835 41 H 0.047 0.953 42 H 0.056 0.944 43 H 0.268 0.732 44 H 0.132 0.868 45 H 0.151 0.849 46 H 0.152 0.848 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.264 -2.316 -8.127 21.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.142 4.142 3 C -0.172 4.172 4 C -0.169 4.169 5 C -0.050 4.050 6 N -0.308 5.308 7 C 0.015 3.985 8 C -0.259 4.259 9 C -0.094 4.094 10 N -0.097 5.097 11 C 0.138 3.862 12 C -0.569 4.569 13 H 0.088 0.912 14 C -0.140 4.140 15 N -0.532 5.532 16 Si 0.735 3.265 17 H -0.195 1.195 18 H -0.206 1.206 19 H -0.207 1.207 20 N -0.083 5.083 21 C -0.079 4.079 22 C 0.060 3.940 23 C -0.170 4.170 24 C -0.062 4.062 25 N -0.203 5.203 26 C -0.061 4.061 27 C -0.171 4.171 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.102 0.898 36 H 0.049 0.951 37 H 0.159 0.841 38 H 0.092 0.908 39 H 0.049 0.951 40 H 0.183 0.817 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.150 0.850 45 H 0.168 0.832 46 H 0.170 0.830 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.867 -2.864 -9.529 21.330 hybrid contribution 0.084 0.488 2.281 2.334 sum -18.783 -2.376 -7.248 20.273 Atomic orbital electron populations 1.21701 0.95331 1.01525 1.01771 1.20791 0.95744 0.94849 1.02857 1.22726 0.99067 0.97391 0.98038 1.22675 0.97605 0.99042 0.97582 1.21179 0.88203 0.99029 0.96620 1.60572 1.04956 1.09165 1.56130 1.20101 0.88720 0.96167 0.93545 1.19586 0.95444 1.15026 0.95849 1.22263 0.85578 1.01751 0.99842 1.49433 1.06917 1.41404 1.11966 1.19806 0.82138 0.95211 0.89036 1.21257 1.02204 0.99153 1.34245 0.91215 1.24944 0.98174 0.96027 0.94860 1.69925 1.28167 1.20532 1.34583 0.86267 0.80981 0.81372 0.77896 1.19487 1.20575 1.20706 1.77695 1.19550 1.14883 0.96148 1.20259 0.91318 1.02081 0.94203 1.18047 0.93308 0.92488 0.90184 1.22057 0.98855 0.96539 0.99523 1.22508 0.97599 0.98499 0.87638 1.67571 1.08902 1.12693 1.31178 1.22561 0.94084 0.91888 0.97617 1.22215 1.00738 1.01609 0.92576 0.92797 0.92806 0.92653 0.91187 0.90709 0.87474 0.87536 0.89829 0.95050 0.84145 0.90779 0.95069 0.81728 0.93469 0.92618 0.92284 0.84993 0.83153 0.83034 0.84770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 37.16 0.37 -0.61 16 2 C -0.11 -0.84 6.02 -27.88 -0.17 -1.01 16 3 C -0.15 -1.37 9.51 -36.02 -0.34 -1.71 16 4 C -0.15 -1.44 9.77 -36.03 -0.35 -1.80 16 5 C 0.08 0.77 5.76 -4.98 -0.03 0.74 16 6 N -0.68 -8.06 6.51 -116.33 -0.76 -8.81 16 7 C 0.14 1.81 5.70 -4.97 -0.03 1.78 16 8 C -0.25 -4.01 5.55 -104.76 -0.58 -4.59 16 9 C 0.06 0.98 11.32 -17.26 -0.20 0.79 16 10 N -0.32 -6.90 3.67 -62.59 -0.23 -7.12 16 11 C 0.26 6.22 6.26 -5.20 -0.03 6.18 16 12 C -0.53 -14.38 9.23 -34.44 -0.32 -14.69 16 13 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -24.78 13.29 55.43 0.74 -24.05 16 16 Si 0.91 21.10 29.54 -169.99 -5.02 16.07 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 N -0.26 -5.71 12.44 33.42 0.42 -5.29 16 21 C 0.08 1.57 6.72 -82.78 -0.56 1.01 16 22 C 0.07 1.14 5.77 -104.58 -0.60 0.53 16 23 C -0.15 -2.06 9.01 -39.11 -0.35 -2.41 16 24 C 0.09 1.21 11.17 -17.61 -0.20 1.02 16 25 N -0.49 -7.08 10.35 -13.34 -0.14 -7.22 16 26 C 0.09 1.31 11.17 -17.61 -0.20 1.11 16 27 C -0.15 -2.31 9.89 -39.11 -0.39 -2.70 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.59 5.32 -51.93 -0.28 0.32 16 33 H 0.11 0.88 8.06 -52.48 -0.42 0.45 16 34 H 0.11 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.08 0.80 5.32 -51.93 -0.28 0.53 16 36 H 0.03 0.30 8.14 -51.92 -0.42 -0.13 16 37 H 0.34 4.12 8.65 -39.29 -0.34 3.78 16 38 H 0.07 0.89 5.81 -51.93 -0.30 0.59 16 39 H 0.03 0.36 8.11 -51.93 -0.42 -0.07 16 40 H 0.17 2.36 8.06 -52.49 -0.42 1.94 16 41 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.06 1.33 8.07 -51.93 -0.42 0.91 16 43 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.13 1.62 6.27 -52.48 -0.33 1.29 16 45 H 0.15 1.47 8.06 -52.49 -0.42 1.04 16 46 H 0.15 1.65 8.06 -52.49 -0.42 1.22 16 47 H 0.13 2.05 8.06 -52.48 -0.42 1.62 16 LS Contribution 396.19 15.07 5.97 5.97 Total: -1.00 -30.09 396.19 -10.07 -40.16 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -6.98 Total: 5.04 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -4.07 Total: -14.75 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: 0.03 Total: -52.49 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.09 -10.07 -40.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449454368.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.320 kcal (2) G-P(sol) polarization free energy of solvation -30.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds