Wall clock time and date at job start Tue Mar 31 2020 15:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50703 * 109.46773 * 2 1 4 4 C 1.30998 * 120.00273 * 127.20111 * 3 2 1 5 5 C 1.50697 * 119.99752 * 7.80781 * 4 3 2 6 6 N 1.46893 * 109.47037 * 127.32845 * 5 4 3 7 7 C 1.46905 * 111.00082 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47342 * 184.77143 * 7 6 5 9 9 C 1.35065 * 126.07629 * 105.64579 * 8 7 6 10 10 N 1.35049 * 107.98995 * 180.14847 * 9 8 7 11 11 C 1.46494 * 125.93290 * 179.87407 * 10 9 8 12 12 C 1.50691 * 109.47414 * 124.71464 * 11 10 9 13 13 H 1.07998 * 120.00088 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00224 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99730 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00315 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47109 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47215 * 120.00272 * 16 14 12 19 19 H 1.48500 * 109.47305 * 240.00194 * 16 14 12 20 20 N 1.40073 * 108.13933 * 359.60697 * 10 9 8 21 21 C 1.31650 * 108.10134 * 0.24427 * 20 10 9 22 22 C 1.48372 * 126.03863 * 179.97438 * 21 20 10 23 23 C 1.39768 * 120.90169 * 137.39421 * 22 21 20 24 24 C 1.37967 * 119.02223 * 179.72783 * 23 22 21 25 25 N 1.31937 * 120.87554 * 0.56437 * 24 23 22 26 26 C 1.31931 * 122.00624 * 359.70680 * 25 24 23 27 27 C 1.37967 * 120.88022 * 0.02562 * 26 25 24 28 28 H 1.09000 * 109.47072 * 300.00344 * 1 2 3 29 29 H 1.08999 * 109.46929 * 60.00707 * 1 2 3 30 30 H 1.09005 * 109.46774 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47072 * 239.99656 * 2 1 3 32 32 H 1.08999 * 109.46929 * 119.99293 * 2 1 3 33 33 H 1.08003 * 119.99668 * 307.18904 * 3 2 1 34 34 H 1.07999 * 120.00018 * 187.80799 * 4 3 2 35 35 H 1.09002 * 109.47524 * 7.32073 * 5 4 3 36 36 H 1.09007 * 109.46882 * 247.32204 * 5 4 3 37 37 H 1.00903 * 111.00826 * 56.04418 * 6 5 4 38 38 H 1.09007 * 109.46915 * 64.77352 * 7 6 5 39 39 H 1.08998 * 109.47153 * 304.77166 * 7 6 5 40 40 H 1.08002 * 126.00187 * 359.97438 * 9 8 7 41 41 H 1.09006 * 109.46934 * 244.71922 * 11 10 9 42 42 H 1.08999 * 109.47118 * 4.71059 * 11 10 9 43 43 H 0.97006 * 119.99571 * 179.97438 * 15 14 12 44 44 H 1.08004 * 120.49069 * 359.97438 * 23 22 21 45 45 H 1.07994 * 119.56174 * 180.24633 * 24 23 22 46 46 H 1.08001 * 119.56321 * 180.02562 * 26 25 24 47 47 H 1.08004 * 120.48927 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8973 1.8099 0.9036 5 6 3.5234 0.8005 1.8311 6 7 4.9855 0.9328 1.7837 7 6 5.6312 -0.0373 2.6781 8 6 7.1186 0.2050 2.6924 9 6 7.8220 0.7753 3.6945 10 7 9.1198 0.8148 3.3233 11 6 10.2249 1.3576 4.1171 12 6 11.2916 0.3055 4.2786 13 1 11.1594 -0.6702 3.8347 14 6 12.4364 0.5883 4.9931 15 7 12.5971 1.7762 5.5341 16 14 13.7583 -0.7160 5.1940 17 1 13.3381 -1.9581 4.4969 18 1 15.0313 -0.2251 4.6077 19 1 13.9562 -1.0021 6.6377 20 7 9.2268 0.2410 2.0499 21 6 8.0231 -0.1281 1.6651 22 6 7.6799 -0.7795 0.3770 23 6 6.7800 -1.8479 0.3302 24 6 6.4844 -2.4211 -0.8895 25 7 7.0469 -1.9807 -1.9987 26 6 7.9052 -0.9788 -1.9974 27 6 8.2525 -0.3454 -0.8219 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 1.6792 2.1184 -0.7452 34 1 3.1618 2.8539 0.9838 35 1 3.2391 -0.2046 1.5196 36 1 3.1754 0.9775 2.8489 37 1 5.2709 1.8748 2.0061 38 1 5.4312 -1.0482 2.3228 39 1 5.2346 0.0784 3.6868 40 1 7.4171 1.1386 4.6275 41 1 10.6449 2.2259 3.6092 42 1 9.8556 1.6543 5.0987 43 1 13.4024 1.9751 6.0371 44 1 6.3197 -2.2167 1.2349 45 1 5.7872 -3.2445 -0.9362 46 1 8.3419 -0.6500 -2.9288 47 1 8.9555 0.4745 -0.8282 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449454368.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:33 Heat of formation + Delta-G solvation = 104.871518 kcal Electronic energy + Delta-G solvation = -26567.072383 eV Core-core repulsion = 22943.796984 eV Total energy + Delta-G solvation = -3623.275399 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.18342 -40.65270 -38.25205 -36.25846 -35.52567 -34.43913 -32.63890 -32.25407 -31.88428 -30.74292 -29.12963 -26.80005 -25.78597 -24.63349 -24.20902 -24.00898 -23.42139 -21.50418 -20.87951 -19.36408 -18.69590 -18.03200 -17.20934 -17.00294 -16.80617 -16.63143 -16.32580 -16.11284 -15.81612 -15.35957 -14.96982 -14.86488 -14.64222 -14.60166 -14.52266 -14.29486 -14.14277 -13.70935 -13.65695 -13.11287 -12.99596 -12.87098 -12.77933 -12.72727 -12.56504 -12.45060 -12.25889 -11.80067 -11.76905 -11.52209 -11.22155 -10.90406 -10.75730 -10.42270 -10.01653 -10.00527 -9.91114 -9.25975 -9.10644 -8.38621 -6.52187 0.10876 0.30570 1.13427 1.33200 1.34134 1.36291 1.48010 1.78615 1.89235 2.30988 2.93660 3.00702 3.45406 3.59191 3.66406 3.87966 3.88747 4.07458 4.19416 4.22263 4.24827 4.26727 4.33125 4.42164 4.48369 4.54943 4.64560 4.66792 4.73637 4.83767 4.85154 4.88260 4.94760 5.00111 5.02894 5.08855 5.17638 5.20287 5.28052 5.41588 5.45677 5.53947 5.70411 5.80515 5.81098 5.82103 5.99964 6.16618 6.26215 6.49888 6.59288 6.92750 7.07930 7.18206 8.69546 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013779 B = 0.002882 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.529682 B = 9713.935583 C =11149.770879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C -0.151 4.151 4 C -0.165 4.165 5 C 0.083 3.917 6 N -0.686 5.686 7 C 0.150 3.850 8 C -0.234 4.234 9 C 0.052 3.948 10 N -0.346 5.346 11 C 0.272 3.728 12 C -0.546 4.546 13 H 0.050 0.950 14 C 0.020 3.980 15 N -0.919 5.919 16 Si 0.969 3.031 17 H -0.276 1.276 18 H -0.274 1.274 19 H -0.267 1.267 20 N -0.315 5.315 21 C 0.089 3.911 22 C 0.044 3.956 23 C -0.145 4.145 24 C 0.100 3.900 25 N -0.504 5.504 26 C 0.098 3.902 27 C -0.166 4.166 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.040 0.960 37 H 0.338 0.662 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.196 0.804 41 H 0.020 0.980 42 H 0.058 0.942 43 H 0.273 0.727 44 H 0.149 0.851 45 H 0.188 0.812 46 H 0.178 0.822 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.323 -3.919 -8.490 24.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.143 4.143 3 C -0.170 4.170 4 C -0.184 4.184 5 C -0.045 4.045 6 N -0.317 5.317 7 C 0.021 3.979 8 C -0.246 4.246 9 C -0.097 4.097 10 N -0.126 5.126 11 C 0.153 3.847 12 C -0.585 4.585 13 H 0.068 0.932 14 C -0.181 4.181 15 N -0.558 5.558 16 Si 0.794 3.206 17 H -0.201 1.201 18 H -0.199 1.199 19 H -0.192 1.192 20 N -0.139 5.139 21 C -0.074 4.074 22 C 0.034 3.966 23 C -0.166 4.166 24 C -0.056 4.056 25 N -0.214 5.214 26 C -0.058 4.058 27 C -0.187 4.187 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.130 0.870 34 H 0.123 0.877 35 H 0.107 0.893 36 H 0.057 0.943 37 H 0.155 0.845 38 H 0.103 0.897 39 H 0.067 0.933 40 H 0.212 0.788 41 H 0.037 0.963 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.167 0.833 45 H 0.205 0.795 46 H 0.195 0.805 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -20.954 -4.463 -9.895 23.599 hybrid contribution 0.587 0.969 2.277 2.544 sum -20.367 -3.495 -7.617 22.024 Atomic orbital electron populations 1.21685 0.94371 1.02153 1.01901 1.20818 0.96582 0.94102 1.02806 1.22921 0.98460 0.98092 0.97559 1.22709 0.98354 0.99095 0.98230 1.21167 0.86722 0.99398 0.97173 1.60541 1.06325 1.08817 1.56010 1.20112 0.86028 0.96840 0.94891 1.19990 0.97195 1.13109 0.94342 1.22887 0.84144 1.01296 1.01335 1.49114 1.07573 1.43533 1.12356 1.19307 0.82678 0.93704 0.89022 1.21383 1.03656 0.98971 1.34450 0.93218 1.25714 0.99997 0.97976 0.94408 1.69994 1.28957 1.21862 1.34950 0.85331 0.78367 0.78548 0.78377 1.20104 1.19901 1.19235 1.77610 1.22014 1.17301 0.96953 1.20782 0.90801 1.00583 0.95270 1.18222 0.94960 0.93964 0.89412 1.22242 0.97982 0.95553 1.00783 1.23091 0.97181 0.98631 0.86721 1.67678 1.09110 1.12768 1.31852 1.22910 0.93633 0.91342 0.97944 1.22252 1.01121 1.02045 0.93273 0.92812 0.92558 0.91802 0.91373 0.90537 0.86970 0.87676 0.89261 0.94254 0.84489 0.89741 0.93262 0.78755 0.96254 0.92431 0.91786 0.83295 0.79536 0.80535 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.89 71.98 0.71 -0.91 16 2 C -0.11 -1.47 6.02 29.85 0.18 -1.29 16 3 C -0.15 -2.44 9.51 25.65 0.24 -2.19 16 4 C -0.17 -2.91 9.77 25.65 0.25 -2.66 16 5 C 0.08 1.46 5.76 85.56 0.49 1.95 16 6 N -0.69 -15.09 6.51 -521.97 -3.40 -18.49 16 7 C 0.15 3.44 5.70 85.56 0.49 3.93 16 8 C -0.23 -7.45 5.55 -19.95 -0.11 -7.56 16 9 C 0.05 1.81 11.32 83.47 0.94 2.76 16 10 N -0.35 -15.57 3.67 -351.94 -1.29 -16.86 16 11 C 0.27 13.85 6.26 85.63 0.54 14.39 16 12 C -0.55 -30.68 9.23 25.60 0.24 -30.44 16 13 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 14 C 0.02 1.08 5.46 84.65 0.46 1.54 16 15 N -0.92 -51.73 13.29 21.45 0.28 -51.44 16 16 Si 0.97 43.69 29.54 68.60 2.03 45.72 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 20 N -0.31 -14.49 12.44 -48.17 -0.60 -15.09 16 21 C 0.09 3.35 6.72 42.52 0.29 3.64 16 22 C 0.04 1.43 5.77 -19.84 -0.11 1.31 16 23 C -0.14 -3.70 9.01 22.58 0.20 -3.50 16 24 C 0.10 2.29 11.17 84.61 0.95 3.24 16 25 N -0.50 -13.30 10.35 -196.13 -2.03 -15.32 16 26 C 0.10 2.57 11.17 84.61 0.95 3.51 16 27 C -0.17 -5.11 9.89 22.58 0.22 -4.89 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 1.02 5.32 -2.39 -0.01 1.01 16 33 H 0.11 1.66 8.06 -2.91 -0.02 1.64 16 34 H 0.11 1.84 8.06 -2.91 -0.02 1.82 16 35 H 0.09 1.47 5.32 -2.39 -0.01 1.46 16 36 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16 37 H 0.34 7.78 8.65 -89.69 -0.78 7.00 16 38 H 0.08 1.78 5.81 -2.38 -0.01 1.77 16 39 H 0.05 0.97 8.11 -2.39 -0.02 0.95 16 40 H 0.20 5.36 8.06 -2.91 -0.02 5.33 16 41 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.06 2.85 8.07 -2.39 -0.02 2.83 16 43 H 0.27 14.34 8.31 -92.70 -0.77 13.57 16 44 H 0.15 3.22 6.27 -2.91 -0.02 3.20 16 45 H 0.19 2.83 8.06 -2.91 -0.02 2.81 16 46 H 0.18 3.56 8.06 -2.91 -0.02 3.54 16 47 H 0.12 3.97 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -66.46 396.19 2.11 -64.35 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.20 Total: 24.30 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 6.92 Total: -17.17 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -7.03 Total: -117.21 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -66.46 2.11 -64.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449454368.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.221 kcal (2) G-P(sol) polarization free energy of solvation -66.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds